RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 ILDR2Q71H61 639 aa15.89■□□□□ 0.13
SYNE2-224ENST00000557024 DMRT2Q9Y5R5 561 aa15.89■□□□□ 0.13
SYNE2-224ENST00000557024 SAMD9Q5K651 1589 aa15.87■□□□□ 0.13
SYNE2-224ENST00000557024 RICTORQ6R327 1708 aa15.86■□□□□ 0.13
SYNE2-224ENST00000557024 ZFYVE16Q7Z3T8 1539 aa15.86■□□□□ 0.13
SYNE2-224ENST00000557024 PLEKHD1A6NEE1 506 aa15.86■□□□□ 0.13
SYNE2-224ENST00000557024 RANGAP1P46060 587 aaPredicted RBP15.86■□□□□ 0.13
SYNE2-224ENST00000557024 ZMYM4Q5VZL5 1548 aa15.84■□□□□ 0.13
SYNE2-224ENST00000557024 SOCS7O14512 581 aa15.84■□□□□ 0.13
SYNE2-224ENST00000557024 SIGLEC1Q9BZZ2 1709 aa15.84■□□□□ 0.13
SYNE2-224ENST00000557024 NPM3O75607 178 aaKnown RBP15.83■□□□□ 0.12
SYNE2-224ENST00000557024 EFCAB5A4FU69 1503 aa15.83■□□□□ 0.12
SYNE2-224ENST00000557024 SLC4A1APQ9BWU0 796 aaKnown RBP15.82■□□□□ 0.12
SYNE2-224ENST00000557024 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.82■□□□□ 0.12
SYNE2-224ENST00000557024 CFAP74Q9C0B2 1584 aa15.81■□□□□ 0.12
SYNE2-224ENST00000557024 MAGI2Q86UL8 1455 aa15.8■□□□□ 0.12
SYNE2-224ENST00000557024 TTC37Q6PGP7 1564 aa15.79■□□□□ 0.12
SYNE2-224ENST00000557024 CEBPAP49715 358 aaPredicted RBP15.79■□□□□ 0.12
SYNE2-224ENST00000557024 HECW1Q76N89 1606 aa15.79■□□□□ 0.12
SYNE2-224ENST00000557024 CSRNP3Q8WYN3 585 aa15.78■□□□□ 0.12
SYNE2-224ENST00000557024 SCAPERQ9BY12 1400 aa15.77■□□□□ 0.12
SYNE2-224ENST00000557024 FER1L4A9Z1Z3 1794 aa15.77■□□□□ 0.11
SYNE2-224ENST00000557024 ARHGEF12Q9NZN5 1544 aa15.76■□□□□ 0.11
SYNE2-224ENST00000557024 ATP10AO60312 1499 aa15.74■□□□□ 0.11
SYNE2-224ENST00000557024 C9orf84Q5VXU9 1444 aa15.74■□□□□ 0.11
SYNE2-224ENST00000557024 PLCH2O75038 1416 aa15.72■□□□□ 0.11
SYNE2-224ENST00000557024 CNKSR2Q8WXI2 1034 aa15.72■□□□□ 0.11
SYNE2-224ENST00000557024 PREX1Q8TCU6 1659 aa15.72■□□□□ 0.11
SYNE2-224ENST00000557024 UHRF1BP1Q6BDS2 1440 aa15.71■□□□□ 0.11
SYNE2-224ENST00000557024 CDK13Q14004 1512 aaKnown RBP15.71■□□□□ 0.11
SYNE2-224ENST00000557024 SPATA31D1Q6ZQQ2 1576 aa15.7■□□□□ 0.1
SYNE2-224ENST00000557024 STRCQ7RTU9 1775 aa15.68■□□□□ 0.1
SYNE2-224ENST00000557024 EFCAB2Q5VUJ9 269 aa15.67■□□□□ 0.1
SYNE2-224ENST00000557024 PTPRTO14522 1441 aa15.65■□□□□ 0.1
SYNE2-224ENST00000557024 AFAP1Q8N556 730 aa15.64■□□□□ 0.09
SYNE2-224ENST00000557024 MYT1LQ9UL68 1186 aa15.64■□□□□ 0.09
SYNE2-224ENST00000557024 ATP1B4Q9UN42 357 aaPredicted RBP15.64■□□□□ 0.09
SYNE2-224ENST00000557024 ZNF518AQ6AHZ1 1483 aa15.64■□□□□ 0.09
SYNE2-224ENST00000557024 LTBP4Q8N2S1 1624 aa15.61■□□□□ 0.09
SYNE2-224ENST00000557024 ESF1Q9H501 851 aaKnown RBP15.59■□□□□ 0.09
SYNE2-224ENST00000557024 EEA1Q15075 1411 aa15.59■□□□□ 0.09
SYNE2-224ENST00000557024 ARHGAP5Q13017 1502 aa15.58■□□□□ 0.09
SYNE2-224ENST00000557024 KDM5CP41229 1560 aa15.58■□□□□ 0.09
SYNE2-224ENST00000557024 DIP2CQ9Y2E4 1556 aa15.58■□□□□ 0.09
SYNE2-224ENST00000557024 MYO5CQ9NQX4 1742 aa15.57■□□□□ 0.08
SYNE2-224ENST00000557024 CDK11AQ9UQ88 783 aaPredicted RBP15.57■□□□□ 0.08
SYNE2-224ENST00000557024 NCOA1Q15788 1441 aa15.57■□□□□ 0.08
SYNE2-224ENST00000557024 TRAPPC8Q9Y2L5 1435 aa15.57■□□□□ 0.08
SYNE2-224ENST00000557024 KIF14Q15058 1648 aa15.57■□□□□ 0.08
SYNE2-224ENST00000557024 IQSEC2Q5JU85 1478 aa15.56■□□□□ 0.08
SYNE2-224ENST00000557024 C3P01024 1663 aa15.55■□□□□ 0.08
SYNE2-224ENST00000557024 REREQ9P2R6 1566 aa15.54■□□□□ 0.08
SYNE2-224ENST00000557024 ABCA6Q8N139 1617 aa15.54■□□□□ 0.08
SYNE2-224ENST00000557024 MLH3Q9UHC1 1453 aa15.53■□□□□ 0.08
SYNE2-224ENST00000557024 TROQ12816 1431 aaPredicted RBP15.53■□□□□ 0.08
SYNE2-224ENST00000557024 FMN1Q68DA7 1419 aa15.53■□□□□ 0.08
SYNE2-224ENST00000557024 UBAP1LF5GYI3 381 aa15.52■□□□□ 0.08
SYNE2-224ENST00000557024 AGLP35573 1532 aa15.52■□□□□ 0.07
SYNE2-224ENST00000557024 CLIP1P30622 1438 aa15.51■□□□□ 0.07
SYNE2-224ENST00000557024 SETD1BQ9UPS6 1966 aaKnown RBP15.51■□□□□ 0.07
SYNE2-224ENST00000557024 ZNF335Q9H4Z2 1342 aaPredicted RBP15.51■□□□□ 0.07
SYNE2-224ENST00000557024 CNTLNQ9NXG0 1405 aa15.5■□□□□ 0.07
SYNE2-224ENST00000557024 NCKAP5LQ9HCH0 1330 aa15.49■□□□□ 0.07
SYNE2-224ENST00000557024 CAMSAP1Q5T5Y3 1602 aa15.49■□□□□ 0.07
SYNE2-224ENST00000557024 ARHGAP35Q9NRY4 1499 aa15.47■□□□□ 0.07
SYNE2-224ENST00000557024 UBTFP17480 764 aaKnown RBP15.47■□□□□ 0.07
SYNE2-224ENST00000557024 ABCC1P33527 1531 aa15.47■□□□□ 0.07
SYNE2-224ENST00000557024 NPATQ14207 1427 aa15.46■□□□□ 0.07
SYNE2-224ENST00000557024 ZMYM3Q14202 1370 aa15.44■□□□□ 0.06
SYNE2-224ENST00000557024 CDC42BPBQ9Y5S2 1711 aa15.43■□□□□ 0.06
SYNE2-224ENST00000557024 KIDINS220Q9ULH0 1771 aa15.41■□□□□ 0.06
SYNE2-224ENST00000557024 PKD2Q13563 968 aa15.41■□□□□ 0.06
SYNE2-224ENST00000557024 PREX2Q70Z35 1606 aa15.41■□□□□ 0.06
SYNE2-224ENST00000557024 ITSN2Q9NZM3 1697 aa15.41■□□□□ 0.06
SYNE2-224ENST00000557024 HSPA1LP34931 641 aa15.39■□□□□ 0.05
SYNE2-224ENST00000557024 ZNF777Q9ULD5 760 aaPredicted RBP15.39■□□□□ 0.05
SYNE2-224ENST00000557024 PLA2R1Q13018 1463 aa15.39■□□□□ 0.05
SYNE2-224ENST00000557024 SAMD9LQ8IVG5 1584 aa15.38■□□□□ 0.05
SYNE2-224ENST00000557024 TCOF1Q13428 1488 aaKnown RBP15.38■□□□□ 0.05
SYNE2-224ENST00000557024 SPAG9O60271 1321 aaKnown RBP15.38■□□□□ 0.05
SYNE2-224ENST00000557024 MROH2AA6NES4 1674 aa15.38■□□□□ 0.05
SYNE2-224ENST00000557024 PIP4K2BP78356 416 aa15.37■□□□□ 0.05
SYNE2-224ENST00000557024 LRRIQ1Q96JM4 1722 aa15.37■□□□□ 0.05
SYNE2-224ENST00000557024 MYO3AQ8NEV4 1616 aa15.36■□□□□ 0.05
SYNE2-224ENST00000557024 PTPRKQ15262 1439 aa15.36■□□□□ 0.05
SYNE2-224ENST00000557024 CEP170BQ9Y4F5 1589 aaPredicted RBP15.36■□□□□ 0.05
SYNE2-224ENST00000557024 DCAF8L1A6NGE4 600 aa15.35■□□□□ 0.05
SYNE2-224ENST00000557024 HNRNPMP52272 730 aaKnown RBP eCLIP15.35■□□□□ 0.05
SYNE2-224ENST00000557024 MED1Q15648 1581 aaPredicted RBP15.35■□□□□ 0.05
SYNE2-224ENST00000557024 SYCP2Q9BX26 1530 aa15.34■□□□□ 0.05
SYNE2-224ENST00000557024 GGT6Q6P531 493 aa15.34■□□□□ 0.05
SYNE2-224ENST00000557024 ZNF142P52746 1687 aaPredicted RBP15.34■□□□□ 0.05
SYNE2-224ENST00000557024 CCDC18Q5T9S5 1454 aa15.33■□□□□ 0.05
SYNE2-224ENST00000557024 HOXD11P31277 338 aaPredicted RBP15.33■□□□□ 0.04
SYNE2-224ENST00000557024 CASKIN1Q8WXD9 1431 aa15.33■□□□□ 0.04
SYNE2-224ENST00000557024 CLTCQ00610 1675 aaKnown RBP15.32■□□□□ 0.04
SYNE2-224ENST00000557024 SUPT6HQ7KZ85 1726 aaKnown RBP15.31■□□□□ 0.04
SYNE2-224ENST00000557024 A2MP01023 1474 aa15.31■□□□□ 0.04
SYNE2-224ENST00000557024 ATP7AQ04656 1500 aa15.31■□□□□ 0.04
SYNE2-224ENST00000557024 PLXNC1O60486 1568 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms