RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-222ENST00000556725 RAPGEF6Q8TEU7 1601 aa14.77□□□□□ -0.05
SYNE2-222ENST00000556725 RIMS1Q86UR5 1692 aaKnown RBP14.76□□□□□ -0.05
SYNE2-222ENST00000556725 RANGAP1P46060 587 aaPredicted RBP14.75□□□□□ -0.05
SYNE2-222ENST00000556725 SAMD9Q5K651 1589 aa14.75□□□□□ -0.05
SYNE2-222ENST00000556725 NUP153P49790 1475 aaKnown RBP14.74□□□□□ -0.05
SYNE2-222ENST00000556725 DENND4BO75064 1496 aaPredicted RBP14.72□□□□□ -0.05
SYNE2-222ENST00000556725 CSRNP3Q8WYN3 585 aa14.72□□□□□ -0.05
SYNE2-222ENST00000556725 AKNAQ7Z591 1439 aa14.72□□□□□ -0.05
SYNE2-222ENST00000556725 RICTORQ6R327 1708 aa14.72□□□□□ -0.05
SYNE2-222ENST00000556725 PLEKHD1A6NEE1 506 aa14.71□□□□□ -0.05
SYNE2-222ENST00000556725 SIGLEC1Q9BZZ2 1709 aa14.71□□□□□ -0.05
SYNE2-222ENST00000556725 ARHGEF40Q8TER5 1519 aa14.71□□□□□ -0.06
SYNE2-222ENST00000556725 FHOD3Q2V2M9 1422 aa14.69□□□□□ -0.06
SYNE2-222ENST00000556725 MLECQ14165 292 aa14.69□□□□□ -0.06
SYNE2-222ENST00000556725 YEATS2Q9ULM3 1422 aa14.68□□□□□ -0.06
SYNE2-222ENST00000556725 CERKQ8TCT0 537 aa14.68□□□□□ -0.06
SYNE2-222ENST00000556725 FANCAO15360 1455 aa14.68□□□□□ -0.06
SYNE2-222ENST00000556725 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.67□□□□□ -0.06
SYNE2-222ENST00000556725 POGZQ7Z3K3 1410 aa14.64□□□□□ -0.07
SYNE2-222ENST00000556725 TTC37Q6PGP7 1564 aa14.64□□□□□ -0.07
SYNE2-222ENST00000556725 ZFYVE16Q7Z3T8 1539 aa14.63□□□□□ -0.07
SYNE2-222ENST00000556725 ZMYM4Q5VZL5 1548 aa14.62□□□□□ -0.07
SYNE2-222ENST00000556725 HECW1Q76N89 1606 aa14.62□□□□□ -0.07
SYNE2-222ENST00000556725 CFAP74Q9C0B2 1584 aa14.61□□□□□ -0.07
SYNE2-222ENST00000556725 CEBPAP49715 358 aaPredicted RBP14.61□□□□□ -0.07
SYNE2-222ENST00000556725 EFCAB5A4FU69 1503 aa14.61□□□□□ -0.07
SYNE2-222ENST00000556725 SCAPERQ9BY12 1400 aa14.6□□□□□ -0.07
SYNE2-222ENST00000556725 FER1L4A9Z1Z3 1794 aa14.6□□□□□ -0.07
SYNE2-222ENST00000556725 MAGI2Q86UL8 1455 aa14.59□□□□□ -0.07
SYNE2-222ENST00000556725 ILDR2Q71H61 639 aa14.59□□□□□ -0.07
SYNE2-222ENST00000556725 CDK13Q14004 1512 aaKnown RBP14.58□□□□□ -0.08
SYNE2-222ENST00000556725 PLCH2O75038 1416 aa14.57□□□□□ -0.08
SYNE2-222ENST00000556725 ATP10AO60312 1499 aa14.56□□□□□ -0.08
SYNE2-222ENST00000556725 ARHGEF12Q9NZN5 1544 aa14.55□□□□□ -0.08
SYNE2-222ENST00000556725 ATP1B4Q9UN42 357 aaPredicted RBP14.54□□□□□ -0.08
SYNE2-222ENST00000556725 STRCQ7RTU9 1775 aa14.53□□□□□ -0.08
SYNE2-222ENST00000556725 DISP3Q9P2K9 1392 aa14.53□□□□□ -0.08
SYNE2-222ENST00000556725 PREX1Q8TCU6 1659 aa14.52□□□□□ -0.08
SYNE2-222ENST00000556725 C9orf84Q5VXU9 1444 aa14.52□□□□□ -0.08
SYNE2-222ENST00000556725 EFCAB2Q5VUJ9 269 aa14.52□□□□□ -0.09
SYNE2-222ENST00000556725 AFAP1Q8N556 730 aa14.51□□□□□ -0.09
SYNE2-222ENST00000556725 EHMT2Q96KQ7 1210 aa14.51□□□□□ -0.09
SYNE2-222ENST00000556725 ZNF219Q9P2Y4 722 aaPredicted RBP14.5□□□□□ -0.09
SYNE2-222ENST00000556725 EEA1Q15075 1411 aa14.49□□□□□ -0.09
SYNE2-222ENST00000556725 APLP2Q06481 763 aa14.49□□□□□ -0.09
SYNE2-222ENST00000556725 SOCS7O14512 581 aa14.48□□□□□ -0.09
SYNE2-222ENST00000556725 SLC4A2P04920 1241 aa14.48□□□□□ -0.09
SYNE2-222ENST00000556725 MYO5CQ9NQX4 1742 aa14.47□□□□□ -0.09
SYNE2-222ENST00000556725 MYT1LQ9UL68 1186 aa14.47□□□□□ -0.09
SYNE2-222ENST00000556725 SETD1BQ9UPS6 1966 aaKnown RBP14.47□□□□□ -0.09
SYNE2-222ENST00000556725 KIF14Q15058 1648 aa14.46□□□□□ -0.09
SYNE2-222ENST00000556725 UHRF1BP1Q6BDS2 1440 aa14.46□□□□□ -0.09
SYNE2-222ENST00000556725 ABCB7O75027 752 aa14.45□□□□□ -0.1
SYNE2-222ENST00000556725 ZNF518AQ6AHZ1 1483 aa14.44□□□□□ -0.1
SYNE2-222ENST00000556725 CDK11AQ9UQ88 783 aaPredicted RBP14.43□□□□□ -0.1
SYNE2-222ENST00000556725 KDM5CP41229 1560 aa14.43□□□□□ -0.1
SYNE2-222ENST00000556725 DIP2CQ9Y2E4 1556 aa14.43□□□□□ -0.1
SYNE2-222ENST00000556725 ARHGAP5Q13017 1502 aa14.42□□□□□ -0.1
SYNE2-222ENST00000556725 UBTFP17480 764 aaKnown RBP14.42□□□□□ -0.1
SYNE2-222ENST00000556725 C3P01024 1663 aa14.42□□□□□ -0.1
SYNE2-222ENST00000556725 ARHGAP35Q9NRY4 1499 aa14.41□□□□□ -0.1
SYNE2-222ENST00000556725 PTPRTO14522 1441 aa14.41□□□□□ -0.1
SYNE2-222ENST00000556725 TROQ12816 1431 aaPredicted RBP14.41□□□□□ -0.1
SYNE2-222ENST00000556725 FMN1Q68DA7 1419 aa14.41□□□□□ -0.1
SYNE2-222ENST00000556725 ABCA6Q8N139 1617 aa14.4□□□□□ -0.1
SYNE2-222ENST00000556725 CDC42BPBQ9Y5S2 1711 aa14.39□□□□□ -0.11
SYNE2-222ENST00000556725 LTBP4Q8N2S1 1624 aa14.39□□□□□ -0.11
SYNE2-222ENST00000556725 TRAPPC8Q9Y2L5 1435 aa14.39□□□□□ -0.11
SYNE2-222ENST00000556725 LRRIQ1Q96JM4 1722 aa14.38□□□□□ -0.11
SYNE2-222ENST00000556725 MLH3Q9UHC1 1453 aa14.38□□□□□ -0.11
SYNE2-222ENST00000556725 ESF1Q9H501 851 aaKnown RBP14.37□□□□□ -0.11
SYNE2-222ENST00000556725 REREQ9P2R6 1566 aa14.37□□□□□ -0.11
SYNE2-222ENST00000556725 SPATA31D1Q6ZQQ2 1576 aa14.36□□□□□ -0.11
SYNE2-222ENST00000556725 AGLP35573 1532 aa14.35□□□□□ -0.11
SYNE2-222ENST00000556725 CLIP1P30622 1438 aa14.34□□□□□ -0.11
SYNE2-222ENST00000556725 NCOA1Q15788 1441 aa14.33□□□□□ -0.11
SYNE2-222ENST00000556725 KIDINS220Q9ULH0 1771 aa14.33□□□□□ -0.12
SYNE2-222ENST00000556725 RBM42Q9BTD8 480 aaKnown RBP14.33□□□□□ -0.12
SYNE2-222ENST00000556725 NCKAP5LQ9HCH0 1330 aa14.33□□□□□ -0.12
SYNE2-222ENST00000556725 ABCC1P33527 1531 aa14.32□□□□□ -0.12
SYNE2-222ENST00000556725 KCNA4P22459 653 aa14.32□□□□□ -0.12
SYNE2-222ENST00000556725 ITSN2Q9NZM3 1697 aa14.31□□□□□ -0.12
SYNE2-222ENST00000556725 CAMSAP1Q5T5Y3 1602 aa14.3□□□□□ -0.12
SYNE2-222ENST00000556725 PREX2Q70Z35 1606 aa14.3□□□□□ -0.12
SYNE2-222ENST00000556725 ZMYM3Q14202 1370 aa14.3□□□□□ -0.12
SYNE2-222ENST00000556725 ZNF777Q9ULD5 760 aaPredicted RBP14.29□□□□□ -0.12
SYNE2-222ENST00000556725 ZNF335Q9H4Z2 1342 aaPredicted RBP14.29□□□□□ -0.12
SYNE2-222ENST00000556725 CNTLNQ9NXG0 1405 aa14.29□□□□□ -0.12
SYNE2-222ENST00000556725 IQSEC2Q5JU85 1478 aa14.29□□□□□ -0.12
SYNE2-222ENST00000556725 CDC42BPAQ5VT25 1732 aa14.27□□□□□ -0.12
SYNE2-222ENST00000556725 UBAP1LF5GYI3 381 aa14.27□□□□□ -0.13
SYNE2-222ENST00000556725 HNRNPMP52272 730 aaKnown RBP eCLIP14.27□□□□□ -0.13
SYNE2-222ENST00000556725 SAMD9LQ8IVG5 1584 aa14.26□□□□□ -0.13
SYNE2-222ENST00000556725 NPATQ14207 1427 aa14.25□□□□□ -0.13
SYNE2-222ENST00000556725 SUPT6HQ7KZ85 1726 aaKnown RBP14.25□□□□□ -0.13
SYNE2-222ENST00000556725 MROH2AA6NES4 1674 aa14.24□□□□□ -0.13
SYNE2-222ENST00000556725 SPAG9O60271 1321 aaKnown RBP14.24□□□□□ -0.13
SYNE2-222ENST00000556725 SAMD1Q6SPF0 538 aaPredicted RBP14.24□□□□□ -0.13
SYNE2-222ENST00000556725 CASKIN1Q8WXD9 1431 aa14.24□□□□□ -0.13
SYNE2-222ENST00000556725 CLTCQ00610 1675 aaKnown RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms