RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 CDK11AQ9UQ88 783 aaPredicted RBP21.04■□□□□ 0.96
SHMT2-223ENST00000556689 TTC37Q6PGP7 1564 aa21.04■□□□□ 0.96
SHMT2-223ENST00000556689 CDK13Q14004 1512 aaKnown RBP21.03■□□□□ 0.96
SHMT2-223ENST00000556689 EHMT2Q96KQ7 1210 aa21.02■□□□□ 0.96
SHMT2-223ENST00000556689 HECW1Q76N89 1606 aa21■□□□□ 0.95
SHMT2-223ENST00000556689 ATP10AO60312 1499 aa20.98■□□□□ 0.95
SHMT2-223ENST00000556689 FMN1Q68DA7 1419 aa20.97■□□□□ 0.95
SHMT2-223ENST00000556689 CERKQ8TCT0 537 aa20.97■□□□□ 0.95
SHMT2-223ENST00000556689 SIGLEC1Q9BZZ2 1709 aa20.95■□□□□ 0.94
SHMT2-223ENST00000556689 CEBPAP49715 358 aaPredicted RBP20.94■□□□□ 0.94
SHMT2-223ENST00000556689 AFAP1Q8N556 730 aa20.94■□□□□ 0.94
SHMT2-223ENST00000556689 MYT1LQ9UL68 1186 aa20.94■□□□□ 0.94
SHMT2-223ENST00000556689 C9orf84Q5VXU9 1444 aa20.94■□□□□ 0.94
SHMT2-223ENST00000556689 ARHGEF12Q9NZN5 1544 aa20.89■□□□□ 0.94
SHMT2-223ENST00000556689 ARHGAP35Q9NRY4 1499 aa20.89■□□□□ 0.94
SHMT2-223ENST00000556689 TROQ12816 1431 aaPredicted RBP20.88■□□□□ 0.93
SHMT2-223ENST00000556689 DMRT2Q9Y5R5 561 aa20.88■□□□□ 0.93
SHMT2-223ENST00000556689 ZNF518AQ6AHZ1 1483 aa20.88■□□□□ 0.93
SHMT2-223ENST00000556689 FER1L4A9Z1Z3 1794 aa20.87■□□□□ 0.93
SHMT2-223ENST00000556689 CLIP1P30622 1438 aa20.87■□□□□ 0.93
SHMT2-223ENST00000556689 ARHGAP5Q13017 1502 aa20.84■□□□□ 0.93
SHMT2-223ENST00000556689 MYO5CQ9NQX4 1742 aa20.84■□□□□ 0.93
SHMT2-223ENST00000556689 KIF14Q15058 1648 aa20.82■□□□□ 0.92
SHMT2-223ENST00000556689 ESF1Q9H501 851 aaKnown RBP20.81■□□□□ 0.92
SHMT2-223ENST00000556689 UHRF1BP1Q6BDS2 1440 aa20.79■□□□□ 0.92
SHMT2-223ENST00000556689 CHIC1Q5VXU3 224 aa20.79■□□□□ 0.92
SHMT2-223ENST00000556689 KDM5CP41229 1560 aa20.78■□□□□ 0.92
SHMT2-223ENST00000556689 MLH3Q9UHC1 1453 aa20.77■□□□□ 0.92
SHMT2-223ENST00000556689 PREX1Q8TCU6 1659 aa20.77■□□□□ 0.91
SHMT2-223ENST00000556689 TRAPPC8Q9Y2L5 1435 aa20.74■□□□□ 0.91
SHMT2-223ENST00000556689 DIP2CQ9Y2E4 1556 aa20.73■□□□□ 0.91
SHMT2-223ENST00000556689 SETD1BQ9UPS6 1966 aaKnown RBP20.73■□□□□ 0.91
SHMT2-223ENST00000556689 REREQ9P2R6 1566 aa20.72■□□□□ 0.91
SHMT2-223ENST00000556689 CASKIN1Q8WXD9 1431 aa20.7■□□□□ 0.9
SHMT2-223ENST00000556689 AGLP35573 1532 aa20.69■□□□□ 0.9
SHMT2-223ENST00000556689 ZNF777Q9ULD5 760 aaPredicted RBP20.69■□□□□ 0.9
SHMT2-223ENST00000556689 CDC42BPBQ9Y5S2 1711 aa20.69■□□□□ 0.9
SHMT2-223ENST00000556689 STRCQ7RTU9 1775 aa20.69■□□□□ 0.9
SHMT2-223ENST00000556689 PTPRTO14522 1441 aa20.69■□□□□ 0.9
SHMT2-223ENST00000556689 CCDC18Q5T9S5 1454 aa20.69■□□□□ 0.9
SHMT2-223ENST00000556689 ABCA6Q8N139 1617 aa20.67■□□□□ 0.9
SHMT2-223ENST00000556689 CNTLNQ9NXG0 1405 aa20.66■□□□□ 0.9
SHMT2-223ENST00000556689 ABCC1P33527 1531 aa20.66■□□□□ 0.9
SHMT2-223ENST00000556689 LRRIQ1Q96JM4 1722 aa20.65■□□□□ 0.9
SHMT2-223ENST00000556689 DISP3Q9P2K9 1392 aa20.64■□□□□ 0.89
SHMT2-223ENST00000556689 PREX2Q70Z35 1606 aa20.64■□□□□ 0.89
SHMT2-223ENST00000556689 SPAG9O60271 1321 aaKnown RBP20.63■□□□□ 0.89
SHMT2-223ENST00000556689 HNRNPMP52272 730 aaKnown RBP eCLIP20.63■□□□□ 0.89
SHMT2-223ENST00000556689 C3P01024 1663 aa20.63■□□□□ 0.89
SHMT2-223ENST00000556689 ZMYM3Q14202 1370 aa20.61■□□□□ 0.89
SHMT2-223ENST00000556689 ITSN2Q9NZM3 1697 aa20.59■□□□□ 0.89
SHMT2-223ENST00000556689 ILDR2Q71H61 639 aa20.59■□□□□ 0.89
SHMT2-223ENST00000556689 KIDINS220Q9ULH0 1771 aa20.59■□□□□ 0.89
SHMT2-223ENST00000556689 CFDP1Q9UEE9 299 aaPredicted RBP20.58■□□□□ 0.89
SHMT2-223ENST00000556689 NCOA1Q15788 1441 aa20.58■□□□□ 0.88
SHMT2-223ENST00000556689 GPATCH8Q9UKJ3 1502 aaKnown RBP20.58■□□□□ 0.88
SHMT2-223ENST00000556689 NPATQ14207 1427 aa20.57■□□□□ 0.88
SHMT2-223ENST00000556689 FYCO1Q9BQS8 1478 aa20.56■□□□□ 0.88
SHMT2-223ENST00000556689 SAMD9LQ8IVG5 1584 aa20.56■□□□□ 0.88
SHMT2-223ENST00000556689 NCKAP5LQ9HCH0 1330 aa20.54■□□□□ 0.88
SHMT2-223ENST00000556689 KIAA1107Q9UPP5 1409 aa20.54■□□□□ 0.88
SHMT2-223ENST00000556689 CDC42BPAQ5VT25 1732 aa20.54■□□□□ 0.88
SHMT2-223ENST00000556689 GGT6Q6P531 493 aa20.54■□□□□ 0.88
SHMT2-223ENST00000556689 LTBP4Q8N2S1 1624 aa20.53■□□□□ 0.88
SHMT2-223ENST00000556689 SOCS7O14512 581 aa20.53■□□□□ 0.88
SHMT2-223ENST00000556689 CCNB3Q8WWL7 1395 aa20.52■□□□□ 0.88
SHMT2-223ENST00000556689 SYCP2Q9BX26 1530 aa20.52■□□□□ 0.87
SHMT2-223ENST00000556689 PPP6R1Q9UPN7 881 aa20.51■□□□□ 0.87
SHMT2-223ENST00000556689 IQSEC2Q5JU85 1478 aa20.5■□□□□ 0.87
SHMT2-223ENST00000556689 PLEKHH2Q8IVE3 1493 aa20.5■□□□□ 0.87
SHMT2-223ENST00000556689 CAMSAP1Q5T5Y3 1602 aa20.5■□□□□ 0.87
SHMT2-223ENST00000556689 PKD2Q13563 968 aa20.5■□□□□ 0.87
SHMT2-223ENST00000556689 A2MP01023 1474 aa20.49■□□□□ 0.87
SHMT2-223ENST00000556689 MTUS2Q5JR59 1369 aa20.47■□□□□ 0.87
SHMT2-223ENST00000556689 MROH2AA6NES4 1674 aa20.47■□□□□ 0.87
SHMT2-223ENST00000556689 ZNF335Q9H4Z2 1342 aaPredicted RBP20.47■□□□□ 0.87
SHMT2-223ENST00000556689 ATP7AQ04656 1500 aa20.47■□□□□ 0.87
SHMT2-223ENST00000556689 SUPT6HQ7KZ85 1726 aaKnown RBP20.45■□□□□ 0.86
SHMT2-223ENST00000556689 PTPRKQ15262 1439 aa20.44■□□□□ 0.86
SHMT2-223ENST00000556689 UBAP1LF5GYI3 381 aa20.44■□□□□ 0.86
SHMT2-223ENST00000556689 ZNF644Q9H582 1327 aaPredicted RBP20.44■□□□□ 0.86
SHMT2-223ENST00000556689 PLA2R1Q13018 1463 aa20.42■□□□□ 0.86
SHMT2-223ENST00000556689 PLXNC1O60486 1568 aa20.41■□□□□ 0.86
SHMT2-223ENST00000556689 CLTCQ00610 1675 aaKnown RBP20.39■□□□□ 0.86
SHMT2-223ENST00000556689 INO80Q9ULG1 1556 aaPredicted RBP20.39■□□□□ 0.85
SHMT2-223ENST00000556689 SPATA31D1Q6ZQQ2 1576 aa20.38■□□□□ 0.85
SHMT2-223ENST00000556689 TCOF1Q13428 1488 aaKnown RBP20.37■□□□□ 0.85
SHMT2-223ENST00000556689 DHX29Q7Z478 1369 aaKnown RBP20.37■□□□□ 0.85
SHMT2-223ENST00000556689 MBD5Q9P267 1494 aa20.37■□□□□ 0.85
SHMT2-223ENST00000556689 RTEL1-TNFRSF6BF6WH68 1400 aa20.36■□□□□ 0.85
SHMT2-223ENST00000556689 CEP170BQ9Y4F5 1589 aaPredicted RBP20.36■□□□□ 0.85
SHMT2-223ENST00000556689 KIF3BO15066 747 aa20.35■□□□□ 0.85
SHMT2-223ENST00000556689 RSPH4AQ5TD94 716 aa20.34■□□□□ 0.85
SHMT2-223ENST00000556689 MYO3AQ8NEV4 1616 aa20.34■□□□□ 0.85
SHMT2-223ENST00000556689 FBXO31Q5XUX0 539 aaPredicted RBP20.33■□□□□ 0.85
SHMT2-223ENST00000556689 A2ML1A8K2U0 1454 aa20.32■□□□□ 0.84
SHMT2-223ENST00000556689 ZNF142P52746 1687 aaPredicted RBP20.32■□□□□ 0.84
SHMT2-223ENST00000556689 ADGBQ8N7X0 1667 aa20.31■□□□□ 0.84
SHMT2-223ENST00000556689 WASHC2CQ9Y4E1 1318 aa20.3■□□□□ 0.84
SHMT2-223ENST00000556689 CEP162Q5TB80 1403 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms