RNA–Protein interactions for RNA: ENST00000555232.5

ARHGEF40-206, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 2

Gene ARHGEF40, Length 3,902 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-206ENST00000555232 CCDC18Q5T9S5 1454 aa16.59■□□□□ 0.25
ARHGEF40-206ENST00000555232 EFCAB2Q5VUJ9 269 aa16.58■□□□□ 0.24
ARHGEF40-206ENST00000555232 ABCA10Q8WWZ4 1543 aa16.58■□□□□ 0.24
ARHGEF40-206ENST00000555232 CASKIN1Q8WXD9 1431 aa16.57■□□□□ 0.24
ARHGEF40-206ENST00000555232 NEUROD2Q15784 382 aa16.55■□□□□ 0.24
ARHGEF40-206ENST00000555232 MYOM3Q5VTT5 1437 aa16.55■□□□□ 0.24
ARHGEF40-206ENST00000555232 STK26Q9P289 416 aa16.55■□□□□ 0.24
ARHGEF40-206ENST00000555232 TRHP20396 242 aaPredicted RBP16.53■□□□□ 0.24
ARHGEF40-206ENST00000555232 ANKRD30AQ9BXX3 1397 aa16.53■□□□□ 0.24
ARHGEF40-206ENST00000555232 ST20-MTHFSA0A0A6YYL1 179 aa16.52■□□□□ 0.24
ARHGEF40-206ENST00000555232 RRBP1Q9P2E9 1410 aaKnown RBP16.52■□□□□ 0.24
ARHGEF40-206ENST00000555232 PLB1Q6P1J6 1458 aa16.52■□□□□ 0.23
ARHGEF40-206ENST00000555232 PPM1GO15355 546 aaPredicted RBP16.5■□□□□ 0.23
ARHGEF40-206ENST00000555232 SPAG9O60271 1321 aaKnown RBP16.5■□□□□ 0.23
ARHGEF40-206ENST00000555232 PCF11O94913 1555 aaKnown RBP16.49■□□□□ 0.23
ARHGEF40-206ENST00000555232 OSCARQ8IYS5 282 aa16.48■□□□□ 0.23
ARHGEF40-206ENST00000555232 TIAM1Q13009 1591 aa16.47■□□□□ 0.23
ARHGEF40-206ENST00000555232 NPM2Q86SE8 214 aaKnown RBP16.47■□□□□ 0.23
ARHGEF40-206ENST00000555232 BIVM-ERCC5R4GMW8 1640 aa16.47■□□□□ 0.23
ARHGEF40-206ENST00000555232 NBPF8Q3BBV2 869 aa16.47■□□□□ 0.23
ARHGEF40-206ENST00000555232 CANXP27824 592 aaKnown RBP16.45■□□□□ 0.22
ARHGEF40-206ENST00000555232 LAMC3Q9Y6N6 1575 aa16.45■□□□□ 0.22
ARHGEF40-206ENST00000555232 SOX12O15370 315 aa16.44■□□□□ 0.22
ARHGEF40-206ENST00000555232 IFT140Q96RY7 1462 aa16.44■□□□□ 0.22
ARHGEF40-206ENST00000555232 FYCO1Q9BQS8 1478 aa16.43■□□□□ 0.22
ARHGEF40-206ENST00000555232 WDR43Q15061 677 aaKnown RBP eCLIP16.42■□□□□ 0.22
ARHGEF40-206ENST00000555232 TIMELESSQ9UNS1 1208 aa16.42■□□□□ 0.22
ARHGEF40-206ENST00000555232 ROCK2O75116 1388 aaKnown RBP16.42■□□□□ 0.22
ARHGEF40-206ENST00000555232 KNSTRNQ9Y448 316 aa16.42■□□□□ 0.22
ARHGEF40-206ENST00000555232 NUTM2FA1L443 756 aa16.41■□□□□ 0.22
ARHGEF40-206ENST00000555232 B4GALNT3Q6L9W6 998 aa16.41■□□□□ 0.22
ARHGEF40-206ENST00000555232 PTPRKQ15262 1439 aa16.4■□□□□ 0.22
ARHGEF40-206ENST00000555232 KIF15Q9NS87 1388 aa16.4■□□□□ 0.22
ARHGEF40-206ENST00000555232 NBPF1Q3BBV0 1214 aa16.39■□□□□ 0.21
ARHGEF40-206ENST00000555232 TRAK1Q9UPV9 953 aa16.39■□□□□ 0.21
ARHGEF40-206ENST00000555232 ZBTB7CA1YPR0 619 aa16.39■□□□□ 0.21
ARHGEF40-206ENST00000555232 CCDC184Q52MB2 194 aa16.39■□□□□ 0.21
ARHGEF40-206ENST00000555232 RBM19Q9Y4C8 960 aaKnown RBP16.38■□□□□ 0.21
ARHGEF40-206ENST00000555232 EPRSP07814 1512 aaKnown RBP16.38■□□□□ 0.21
ARHGEF40-206ENST00000555232 CCDC136Q96JN2 1154 aa16.38■□□□□ 0.21
ARHGEF40-206ENST00000555232 WASHC2CQ9Y4E1 1318 aa16.37■□□□□ 0.21
ARHGEF40-206ENST00000555232 WASHC2AQ641Q2 1341 aa16.36■□□□□ 0.21
ARHGEF40-206ENST00000555232 RAPGEF3O95398 923 aa16.36■□□□□ 0.21
ARHGEF40-206ENST00000555232 UACAQ9BZF9 1416 aa16.35■□□□□ 0.21
ARHGEF40-206ENST00000555232 C11orf95C9JLR9 678 aaPredicted RBP16.35■□□□□ 0.21
ARHGEF40-206ENST00000555232 NAIPQ13075 1403 aa16.34■□□□□ 0.21
ARHGEF40-206ENST00000555232 ANKRD50Q9ULJ7 1429 aa16.34■□□□□ 0.21
ARHGEF40-206ENST00000555232 C14orf37Q86TY3 774 aa16.34■□□□□ 0.21
ARHGEF40-206ENST00000555232 POGKQ9P215 609 aa16.34■□□□□ 0.21
ARHGEF40-206ENST00000555232 ARHGEF11O15085 1522 aa16.33■□□□□ 0.21
ARHGEF40-206ENST00000555232 WDR97A6NE52 1622 aa16.33■□□□□ 0.2
ARHGEF40-206ENST00000555232 KIAA0586Q9BVV6 1533 aa16.32■□□□□ 0.2
ARHGEF40-206ENST00000555232 GRIN2AQ12879 1464 aa16.32■□□□□ 0.2
ARHGEF40-206ENST00000555232 TMF1P82094 1093 aa16.32■□□□□ 0.2
ARHGEF40-206ENST00000555232 SRPK2P78362 688 aaKnown RBP16.31■□□□□ 0.2
ARHGEF40-206ENST00000555232 IQGAP2Q13576 1575 aa16.31■□□□□ 0.2
ARHGEF40-206ENST00000555232 FAM69CQ0P6D2 419 aa16.31■□□□□ 0.2
ARHGEF40-206ENST00000555232 TMEM132EQ6IEE7 984 aa16.31■□□□□ 0.2
ARHGEF40-206ENST00000555232 PRKRIP1Q9H875 184 aaPredicted RBP16.29■□□□□ 0.2
ARHGEF40-206ENST00000555232 KIF21AQ7Z4S6 1674 aa16.29■□□□□ 0.2
ARHGEF40-206ENST00000555232 USP47Q96K76 1375 aa16.29■□□□□ 0.2
ARHGEF40-206ENST00000555232 KIF7Q2M1P5 1343 aa16.29■□□□□ 0.2
ARHGEF40-206ENST00000555232 DAXXQ9UER7 740 aaPredicted RBP16.28■□□□□ 0.2
ARHGEF40-206ENST00000555232 EFCAB5A4FU69 1503 aa16.28■□□□□ 0.2
ARHGEF40-206ENST00000555232 CCDC146Q8IYE0 955 aa16.28■□□□□ 0.2
ARHGEF40-206ENST00000555232 PANK3Q9H999 370 aa16.28■□□□□ 0.2
ARHGEF40-206ENST00000555232 CCDC144AA2RUR9 1427 aa16.28■□□□□ 0.2
ARHGEF40-206ENST00000555232 TROQ12816 1431 aaPredicted RBP16.27■□□□□ 0.2
ARHGEF40-206ENST00000555232 KANK1Q14678 1352 aa16.27■□□□□ 0.19
ARHGEF40-206ENST00000555232 U2SURPO15042 1029 aaKnown RBP16.26■□□□□ 0.19
ARHGEF40-206ENST00000555232 THOC2Q8NI27 1593 aaKnown RBP16.26■□□□□ 0.19
ARHGEF40-206ENST00000555232 HFM1A2PYH4 1435 aa16.26■□□□□ 0.19
ARHGEF40-206ENST00000555232 ANO8Q9HCE9 1232 aaPredicted RBP16.25■□□□□ 0.19
ARHGEF40-206ENST00000555232 CCER2I3L3R5 266 aa16.24■□□□□ 0.19
ARHGEF40-206ENST00000555232 LAS1LQ9Y4W2 734 aaKnown RBP16.23■□□□□ 0.19
ARHGEF40-206ENST00000555232 DAPK1P53355 1430 aa16.23■□□□□ 0.19
ARHGEF40-206ENST00000555232 SCAPERQ9BY12 1400 aa16.23■□□□□ 0.19
ARHGEF40-206ENST00000555232 NEFMP07197 916 aa16.23■□□□□ 0.19
ARHGEF40-206ENST00000555232 SYNJ2O15056 1496 aa16.23■□□□□ 0.19
ARHGEF40-206ENST00000555232 CFAP70Q5T0N1 1121 aa16.23■□□□□ 0.19
ARHGEF40-206ENST00000555232 LMOD2Q6P5Q4 547 aa16.23■□□□□ 0.19
ARHGEF40-206ENST00000555232 ARHGAP5Q13017 1502 aa16.22■□□□□ 0.19
ARHGEF40-206ENST00000555232 RSPH4AQ5TD94 716 aa16.22■□□□□ 0.19
ARHGEF40-206ENST00000555232 ABCC5O15440 1437 aa16.21■□□□□ 0.19
ARHGEF40-206ENST00000555232 C9orf84Q5VXU9 1444 aa16.2■□□□□ 0.18
ARHGEF40-206ENST00000555232 FRAT1Q92837 279 aaPredicted RBP16.2■□□□□ 0.18
ARHGEF40-206ENST00000555232 RRP7AQ9Y3A4 280 aaKnown RBP16.19■□□□□ 0.18
ARHGEF40-206ENST00000555232 EHBP1L1Q8N3D4 1523 aa16.18■□□□□ 0.18
ARHGEF40-206ENST00000555232 MSH5O43196 834 aa16.18■□□□□ 0.18
ARHGEF40-206ENST00000555232 CUL7Q14999 1698 aa16.17■□□□□ 0.18
ARHGEF40-206ENST00000555232 PLIN1O60240 522 aa16.16■□□□□ 0.18
ARHGEF40-206ENST00000555232 MORC1Q86VD1 984 aa16.16■□□□□ 0.18
ARHGEF40-206ENST00000555232 DEKP35659 375 aaKnown RBP16.16■□□□□ 0.18
ARHGEF40-206ENST00000555232 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.16■□□□□ 0.18
ARHGEF40-206ENST00000555232 MINK1Q8N4C8 1332 aaPredicted RBP16.15■□□□□ 0.18
ARHGEF40-206ENST00000555232 CCDC7Q96M83 1385 aa16.15■□□□□ 0.18
ARHGEF40-206ENST00000555232 NBR1Q14596 966 aa16.14■□□□□ 0.18
ARHGEF40-206ENST00000555232 NUP153P49790 1475 aaKnown RBP16.14■□□□□ 0.17
ARHGEF40-206ENST00000555232 CDCA8Q53HL2 280 aa16.13■□□□□ 0.17
ARHGEF40-206ENST00000555232 HECW1Q76N89 1606 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms