RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MIA2Q96PC5 1412 aa10.49□□□□□ -0.73
LIMA1-213ENST00000552720 C11orf95C9JLR9 678 aaPredicted RBP10.48□□□□□ -0.73
LIMA1-213ENST00000552720 NEFLP07196 543 aa10.48□□□□□ -0.73
LIMA1-213ENST00000552720 HNRNPUQ00839 825 aaKnown RBP eCLIP10.48□□□□□ -0.73
LIMA1-213ENST00000552720 AKNAQ7Z591 1439 aa10.48□□□□□ -0.73
LIMA1-213ENST00000552720 CCDC184Q52MB2 194 aa10.48□□□□□ -0.73
LIMA1-213ENST00000552720 MRC2Q9UBG0 1479 aa10.48□□□□□ -0.73
LIMA1-213ENST00000552720 KIAA0556O60303 1618 aa10.48□□□□□ -0.73
LIMA1-213ENST00000552720 DAPK1P53355 1430 aa10.47□□□□□ -0.73
LIMA1-213ENST00000552720 DISP1Q96F81 1524 aa10.47□□□□□ -0.73
LIMA1-213ENST00000552720 DNMT1P26358 1616 aaKnown RBP10.46□□□□□ -0.73
LIMA1-213ENST00000552720 EIF4G2P78344 907 aaKnown RBP eCLIP10.46□□□□□ -0.73
LIMA1-213ENST00000552720 IRX6P78412 446 aaPredicted RBP10.46□□□□□ -0.73
LIMA1-213ENST00000552720 NUP153P49790 1475 aaKnown RBP10.46□□□□□ -0.73
LIMA1-213ENST00000552720 NBPF8Q3BBV2 869 aa10.46□□□□□ -0.74
LIMA1-213ENST00000552720 ABCC5O15440 1437 aa10.45□□□□□ -0.74
LIMA1-213ENST00000552720 RAPGEF6Q8TEU7 1601 aa10.45□□□□□ -0.74
LIMA1-213ENST00000552720 CNTLNQ9NXG0 1405 aa10.44□□□□□ -0.74
LIMA1-213ENST00000552720 ANKRD30BQ9BXX2 1392 aa10.43□□□□□ -0.74
LIMA1-213ENST00000552720 TEX14Q8IWB6 1497 aa10.43□□□□□ -0.74
LIMA1-213ENST00000552720 EIF4G3O43432 1585 aaKnown RBP10.43□□□□□ -0.74
LIMA1-213ENST00000552720 RPRD2Q5VT52 1461 aaKnown RBP10.42□□□□□ -0.74
LIMA1-213ENST00000552720 KIAA0586Q9BVV6 1533 aa10.42□□□□□ -0.74
LIMA1-213ENST00000552720 CCDC7Q96M83 1385 aa10.42□□□□□ -0.74
LIMA1-213ENST00000552720 PRG4Q92954 1404 aaPredicted RBP10.42□□□□□ -0.74
LIMA1-213ENST00000552720 POLR1AO95602 1720 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-213ENST00000552720 NCOA1Q15788 1441 aa10.41□□□□□ -0.74
LIMA1-213ENST00000552720 KIF14Q15058 1648 aa10.41□□□□□ -0.74
LIMA1-213ENST00000552720 GRIN2AQ12879 1464 aa10.41□□□□□ -0.74
LIMA1-213ENST00000552720 IFT140Q96RY7 1462 aa10.41□□□□□ -0.74
LIMA1-213ENST00000552720 ROCK1Q13464 1354 aa10.4□□□□□ -0.74
LIMA1-213ENST00000552720 RBM19Q9Y4C8 960 aaKnown RBP10.4□□□□□ -0.74
LIMA1-213ENST00000552720 PLB1Q6P1J6 1458 aa10.4□□□□□ -0.74
LIMA1-213ENST00000552720 FAM9BQ8IZU0 186 aa10.4□□□□□ -0.75
LIMA1-213ENST00000552720 PIAS4Q8N2W9 510 aaPredicted RBP10.4□□□□□ -0.75
LIMA1-213ENST00000552720 PRKRIP1Q9H875 184 aaPredicted RBP10.39□□□□□ -0.75
LIMA1-213ENST00000552720 ZNF777Q9ULD5 760 aaPredicted RBP10.39□□□□□ -0.75
LIMA1-213ENST00000552720 CAMSAP2Q08AD1 1489 aa10.39□□□□□ -0.75
LIMA1-213ENST00000552720 CNGB1Q14028 1251 aaPredicted RBP10.39□□□□□ -0.75
LIMA1-213ENST00000552720 PZPP20742 1482 aa10.38□□□□□ -0.75
LIMA1-213ENST00000552720 ADGBQ8N7X0 1667 aa10.38□□□□□ -0.75
LIMA1-213ENST00000552720 KIF7Q2M1P5 1343 aa10.38□□□□□ -0.75
LIMA1-213ENST00000552720 CEP170Q5SW79 1584 aa10.38□□□□□ -0.75
LIMA1-213ENST00000552720 ZBTB22O15209 634 aa10.38□□□□□ -0.75
LIMA1-213ENST00000552720 ANP32EQ9BTT0 268 aa10.38□□□□□ -0.75
LIMA1-213ENST00000552720 ITSN2Q9NZM3 1697 aa10.37□□□□□ -0.75
LIMA1-213ENST00000552720 SPATA31E1Q6ZUB1 1445 aa10.37□□□□□ -0.75
LIMA1-213ENST00000552720 BCORL1Q5H9F3 1711 aa10.37□□□□□ -0.75
LIMA1-213ENST00000552720 CROCC2H7BZ55 1655 aa10.37□□□□□ -0.75
LIMA1-213ENST00000552720 FBLN2P98095 1184 aa10.36□□□□□ -0.75
LIMA1-213ENST00000552720 MRS2Q9HD23 443 aa10.36□□□□□ -0.75
LIMA1-213ENST00000552720 CFDP1Q9UEE9 299 aaPredicted RBP10.36□□□□□ -0.75
LIMA1-213ENST00000552720 TROQ12816 1431 aaPredicted RBP10.36□□□□□ -0.75
LIMA1-213ENST00000552720 ZNF326Q5BKZ1 582 aaKnown RBP10.36□□□□□ -0.75
LIMA1-213ENST00000552720 GPATCH8Q9UKJ3 1502 aaKnown RBP10.36□□□□□ -0.75
LIMA1-213ENST00000552720 CDK11AQ9UQ88 783 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-213ENST00000552720 POLR3GLQ9BT43 218 aa10.34□□□□□ -0.75
LIMA1-213ENST00000552720 CDC42BPAQ5VT25 1732 aa10.34□□□□□ -0.75
LIMA1-213ENST00000552720 ADCY10Q96PN6 1610 aa10.34□□□□□ -0.75
LIMA1-213ENST00000552720 CHMP7Q8WUX9 453 aaPredicted RBP10.33□□□□□ -0.76
LIMA1-213ENST00000552720 SENP3-EIF4A1A0A087X0R7 540 aa10.33□□□□□ -0.76
LIMA1-213ENST00000552720 PKD2Q13563 968 aa10.32□□□□□ -0.76
LIMA1-213ENST00000552720 MBD5Q9P267 1494 aa10.32□□□□□ -0.76
LIMA1-213ENST00000552720 KIAA1107Q9UPP5 1409 aa10.31□□□□□ -0.76
LIMA1-213ENST00000552720 ADGRL2O95490 1459 aa10.3□□□□□ -0.76
LIMA1-213ENST00000552720 ERCC6Q03468 1493 aa10.3□□□□□ -0.76
LIMA1-213ENST00000552720 MAGI1Q96QZ7 1491 aaPredicted RBP10.3□□□□□ -0.76
LIMA1-213ENST00000552720 USP47Q96K76 1375 aa10.3□□□□□ -0.76
LIMA1-213ENST00000552720 KDM5CP41229 1560 aa10.3□□□□□ -0.76
LIMA1-213ENST00000552720 SYNJ2O15056 1496 aa10.3□□□□□ -0.76
LIMA1-213ENST00000552720 MSH5O43196 834 aa10.29□□□□□ -0.76
LIMA1-213ENST00000552720 JPH4Q96JJ6 628 aa10.29□□□□□ -0.76
LIMA1-213ENST00000552720 ZBED9Q6R2W3 1325 aa10.29□□□□□ -0.76
LIMA1-213ENST00000552720 DHX29Q7Z478 1369 aaKnown RBP10.29□□□□□ -0.76
LIMA1-213ENST00000552720 ANKRD50Q9ULJ7 1429 aa10.29□□□□□ -0.76
LIMA1-213ENST00000552720 B4GALNT3Q6L9W6 998 aa10.28□□□□□ -0.76
LIMA1-213ENST00000552720 ANKRD30AQ9BXX3 1397 aa10.28□□□□□ -0.76
LIMA1-213ENST00000552720 AMER1Q5JTC6 1135 aaPredicted RBP10.27□□□□□ -0.77
LIMA1-213ENST00000552720 ABCA8O94911 1581 aa10.26□□□□□ -0.77
LIMA1-213ENST00000552720 NUP155O75694 1391 aa10.26□□□□□ -0.77
LIMA1-213ENST00000552720 CARMIL2Q6F5E8 1435 aa10.26□□□□□ -0.77
LIMA1-213ENST00000552720 ATP10BO94823 1461 aa10.26□□□□□ -0.77
LIMA1-213ENST00000552720 ABCC10Q5T3U5 1492 aa10.26□□□□□ -0.77
LIMA1-213ENST00000552720 PPP4R2Q9NY27 417 aa10.26□□□□□ -0.77
LIMA1-213ENST00000552720 KDM2AQ9Y2K7 1162 aa10.26□□□□□ -0.77
LIMA1-213ENST00000552720 C9orf84Q5VXU9 1444 aa10.26□□□□□ -0.77
LIMA1-213ENST00000552720 NUP160Q12769 1436 aa10.25□□□□□ -0.77
LIMA1-213ENST00000552720 PLEKHD1A6NEE1 506 aa10.25□□□□□ -0.77
LIMA1-213ENST00000552720 HNRNPMP52272 730 aaKnown RBP eCLIP10.25□□□□□ -0.77
LIMA1-213ENST00000552720 CDC42BPBQ9Y5S2 1711 aa10.23□□□□□ -0.77
LIMA1-213ENST00000552720 CARD11Q9BXL7 1154 aa10.23□□□□□ -0.77
LIMA1-213ENST00000552720 RALGAPBQ86X10 1494 aa10.22□□□□□ -0.77
LIMA1-213ENST00000552720 SHANK2Q9UPX8 1470 aa10.21□□□□□ -0.77
LIMA1-213ENST00000552720 ST20-MTHFSA0A0A6YYL1 179 aa10.21□□□□□ -0.77
LIMA1-213ENST00000552720 ERICH6BQ5W0A0 696 aa10.21□□□□□ -0.77
LIMA1-213ENST00000552720 PPP4R3CPQ6ZMV5 832 aa10.21□□□□□ -0.77
LIMA1-213ENST00000552720 DCAF11Q8TEB1 546 aa10.21□□□□□ -0.77
LIMA1-213ENST00000552720 UHRF1BP1Q6BDS2 1440 aa10.21□□□□□ -0.78
LIMA1-213ENST00000552720 KIF15Q9NS87 1388 aa10.21□□□□□ -0.78
LIMA1-213ENST00000552720 TSPY4P0CV99 314 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms