RNA–Protein interactions for RNA: ENST00000552003.1

SLC48A1-209, Transcript of solute carrier family 48 member 1, humanhuman

TSL 3

Gene SLC48A1, Length 882 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC48A1-209ENST00000552003 SETD1BQ9UPS6 1966 aaKnown RBP18.02■□□□□ 0.48
SLC48A1-209ENST00000552003 MAGI2Q86UL8 1455 aa18.01■□□□□ 0.47
SLC48A1-209ENST00000552003 UHRF1BP1Q6BDS2 1440 aa18■□□□□ 0.47
SLC48A1-209ENST00000552003 RAPGEF6Q8TEU7 1601 aa18■□□□□ 0.47
SLC48A1-209ENST00000552003 NUP153P49790 1475 aaKnown RBP17.99■□□□□ 0.47
SLC48A1-209ENST00000552003 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.98■□□□□ 0.47
SLC48A1-209ENST00000552003 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.97■□□□□ 0.47
SLC48A1-209ENST00000552003 HNRNPUL2Q1KMD3 747 aaKnown RBP17.97■□□□□ 0.47
SLC48A1-209ENST00000552003 ATP10AO60312 1499 aa17.95■□□□□ 0.46
SLC48A1-209ENST00000552003 CFAP74Q9C0B2 1584 aa17.95■□□□□ 0.46
SLC48A1-209ENST00000552003 PRXQ9BXM0 1461 aa17.94■□□□□ 0.46
SLC48A1-209ENST00000552003 MED1Q15648 1581 aaPredicted RBP17.93■□□□□ 0.46
SLC48A1-209ENST00000552003 SAMD9Q5K651 1589 aa17.92■□□□□ 0.46
SLC48A1-209ENST00000552003 NCOA1Q15788 1441 aa17.92■□□□□ 0.46
SLC48A1-209ENST00000552003 C9orf84Q5VXU9 1444 aa17.92■□□□□ 0.46
SLC48A1-209ENST00000552003 SCAPERQ9BY12 1400 aa17.92■□□□□ 0.46
SLC48A1-209ENST00000552003 UBAP1LF5GYI3 381 aa17.92■□□□□ 0.46
SLC48A1-209ENST00000552003 C3P01024 1663 aa17.91■□□□□ 0.46
SLC48A1-209ENST00000552003 ZNF335Q9H4Z2 1342 aaPredicted RBP17.9■□□□□ 0.46
SLC48A1-209ENST00000552003 PLEKHD1A6NEE1 506 aa17.87■□□□□ 0.45
SLC48A1-209ENST00000552003 HSPA1LP34931 641 aa17.86■□□□□ 0.45
SLC48A1-209ENST00000552003 FAM9AQ8IZU1 332 aaPredicted RBP17.83■□□□□ 0.44
SLC48A1-209ENST00000552003 PLCH2O75038 1416 aa17.82■□□□□ 0.44
SLC48A1-209ENST00000552003 TRAPPC8Q9Y2L5 1435 aa17.82■□□□□ 0.44
SLC48A1-209ENST00000552003 NCKAP5LQ9HCH0 1330 aa17.82■□□□□ 0.44
SLC48A1-209ENST00000552003 CAMSAP1Q5T5Y3 1602 aa17.82■□□□□ 0.44
SLC48A1-209ENST00000552003 DIP2CQ9Y2E4 1556 aa17.79■□□□□ 0.44
SLC48A1-209ENST00000552003 AFAP1Q8N556 730 aa17.77■□□□□ 0.44
SLC48A1-209ENST00000552003 KDM5CP41229 1560 aa17.75■□□□□ 0.43
SLC48A1-209ENST00000552003 CDK13Q14004 1512 aaKnown RBP17.74■□□□□ 0.43
SLC48A1-209ENST00000552003 ABCA6Q8N139 1617 aa17.74■□□□□ 0.43
SLC48A1-209ENST00000552003 REREQ9P2R6 1566 aa17.74■□□□□ 0.43
SLC48A1-209ENST00000552003 PIP4K2BP78356 416 aa17.72■□□□□ 0.43
SLC48A1-209ENST00000552003 SENP3Q9H4L4 574 aaPredicted RBP17.71■□□□□ 0.43
SLC48A1-209ENST00000552003 ZNF518AQ6AHZ1 1483 aa17.7■□□□□ 0.42
SLC48A1-209ENST00000552003 RANGAP1P46060 587 aaPredicted RBP17.7■□□□□ 0.42
SLC48A1-209ENST00000552003 EFCAB2Q5VUJ9 269 aa17.7■□□□□ 0.42
SLC48A1-209ENST00000552003 AGLP35573 1532 aa17.7■□□□□ 0.42
SLC48A1-209ENST00000552003 SCAF1Q9H7N4 1312 aaKnown RBP17.7■□□□□ 0.42
SLC48A1-209ENST00000552003 TCOF1Q13428 1488 aaKnown RBP17.69■□□□□ 0.42
SLC48A1-209ENST00000552003 ALKQ9UM73 1620 aa17.69■□□□□ 0.42
SLC48A1-209ENST00000552003 MYO5CQ9NQX4 1742 aa17.68■□□□□ 0.42
SLC48A1-209ENST00000552003 RGS17Q9UGC6 210 aaPredicted RBP17.67■□□□□ 0.42
SLC48A1-209ENST00000552003 NPATQ14207 1427 aa17.65■□□□□ 0.42
SLC48A1-209ENST00000552003 MLH3Q9UHC1 1453 aa17.65■□□□□ 0.42
SLC48A1-209ENST00000552003 KIF14Q15058 1648 aa17.65■□□□□ 0.42
SLC48A1-209ENST00000552003 PLA2R1Q13018 1463 aa17.64■□□□□ 0.41
SLC48A1-209ENST00000552003 PKD2Q13563 968 aa17.63■□□□□ 0.41
SLC48A1-209ENST00000552003 ZNF142P52746 1687 aaPredicted RBP17.62■□□□□ 0.41
SLC48A1-209ENST00000552003 ESF1Q9H501 851 aaKnown RBP17.62■□□□□ 0.41
SLC48A1-209ENST00000552003 MYT1LQ9UL68 1186 aa17.62■□□□□ 0.41
SLC48A1-209ENST00000552003 ZMYM3Q14202 1370 aa17.62■□□□□ 0.41
SLC48A1-209ENST00000552003 CNTLNQ9NXG0 1405 aa17.62■□□□□ 0.41
SLC48A1-209ENST00000552003 MYO3AQ8NEV4 1616 aa17.61■□□□□ 0.41
SLC48A1-209ENST00000552003 MROH2AA6NES4 1674 aa17.61■□□□□ 0.41
SLC48A1-209ENST00000552003 TOM1O60784 492 aa17.6■□□□□ 0.41
SLC48A1-209ENST00000552003 PPP6R1Q9UPN7 881 aa17.6■□□□□ 0.41
SLC48A1-209ENST00000552003 KIDINS220Q9ULH0 1771 aa17.6■□□□□ 0.41
SLC48A1-209ENST00000552003 CEP170BQ9Y4F5 1589 aaPredicted RBP17.59■□□□□ 0.41
SLC48A1-209ENST00000552003 SUPT6HQ7KZ85 1726 aaKnown RBP17.58■□□□□ 0.41
SLC48A1-209ENST00000552003 ARHGAP5Q13017 1502 aa17.58■□□□□ 0.41
SLC48A1-209ENST00000552003 CDC42BPBQ9Y5S2 1711 aa17.56■□□□□ 0.4
SLC48A1-209ENST00000552003 PTPRKQ15262 1439 aa17.55■□□□□ 0.4
SLC48A1-209ENST00000552003 NEURL4Q96JN8 1562 aa17.54■□□□□ 0.4
SLC48A1-209ENST00000552003 SHANK2Q9UPX8 1470 aa17.54■□□□□ 0.4
SLC48A1-209ENST00000552003 CLTCQ00610 1675 aaKnown RBP17.54■□□□□ 0.4
SLC48A1-209ENST00000552003 CPS1P31327 1500 aa17.53■□□□□ 0.4
SLC48A1-209ENST00000552003 CSRNP3Q8WYN3 585 aa17.53■□□□□ 0.4
SLC48A1-209ENST00000552003 ABCC1P33527 1531 aa17.52■□□□□ 0.4
SLC48A1-209ENST00000552003 ITSN2Q9NZM3 1697 aa17.51■□□□□ 0.39
SLC48A1-209ENST00000552003 DNMT1P26358 1616 aaKnown RBP17.5■□□□□ 0.39
SLC48A1-209ENST00000552003 VWDEQ8N2E2 1590 aa17.5■□□□□ 0.39
SLC48A1-209ENST00000552003 POTEAQ6S8J7 498 aa17.49■□□□□ 0.39
SLC48A1-209ENST00000552003 TROQ12816 1431 aaPredicted RBP17.47■□□□□ 0.39
SLC48A1-209ENST00000552003 POLR1AO95602 1720 aaPredicted RBP17.47■□□□□ 0.39
SLC48A1-209ENST00000552003 A2ML1A8K2U0 1454 aa17.45■□□□□ 0.38
SLC48A1-209ENST00000552003 LRRIQ1Q96JM4 1722 aa17.45■□□□□ 0.38
SLC48A1-209ENST00000552003 STRCP1A6NGW2 1772 aa17.45■□□□□ 0.38
SLC48A1-209ENST00000552003 ATP1B4Q9UN42 357 aaPredicted RBP17.44■□□□□ 0.38
SLC48A1-209ENST00000552003 SAMD9LQ8IVG5 1584 aa17.44■□□□□ 0.38
SLC48A1-209ENST00000552003 PREX2Q70Z35 1606 aa17.43■□□□□ 0.38
SLC48A1-209ENST00000552003 SETD1AO15047 1707 aaKnown RBP17.41■□□□□ 0.38
SLC48A1-209ENST00000552003 PLXNC1O60486 1568 aa17.4■□□□□ 0.38
SLC48A1-209ENST00000552003 SRCAPQ6ZRS2 3230 aa17.4■□□□□ 0.38
SLC48A1-209ENST00000552003 CDK11AQ9UQ88 783 aaPredicted RBP17.39■□□□□ 0.37
SLC48A1-209ENST00000552003 LRRC7Q96NW7 1537 aa17.38■□□□□ 0.37
SLC48A1-209ENST00000552003 GGT6Q6P531 493 aa17.37■□□□□ 0.37
SLC48A1-209ENST00000552003 CDC42BPAQ5VT25 1732 aa17.36■□□□□ 0.37
SLC48A1-209ENST00000552003 FBXO31Q5XUX0 539 aaPredicted RBP17.36■□□□□ 0.37
SLC48A1-209ENST00000552003 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.35■□□□□ 0.37
SLC48A1-209ENST00000552003 A2MP01023 1474 aa17.34■□□□□ 0.37
SLC48A1-209ENST00000552003 CLIP1P30622 1438 aa17.34■□□□□ 0.37
SLC48A1-209ENST00000552003 RNF17Q9BXT8 1623 aaKnown RBP17.33■□□□□ 0.37
SLC48A1-209ENST00000552003 SYCP2Q9BX26 1530 aa17.33■□□□□ 0.37
SLC48A1-209ENST00000552003 MED14O60244 1454 aa17.33■□□□□ 0.37
SLC48A1-209ENST00000552003 SPAG9O60271 1321 aaKnown RBP17.33■□□□□ 0.36
SLC48A1-209ENST00000552003 NPHP4O75161 1426 aaPredicted RBP17.32■□□□□ 0.36
SLC48A1-209ENST00000552003 FMN1Q68DA7 1419 aa17.32■□□□□ 0.36
SLC48A1-209ENST00000552003 HNRNPMP52272 730 aaKnown RBP eCLIP17.32■□□□□ 0.36
SLC48A1-209ENST00000552003 INO80Q9ULG1 1556 aaPredicted RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms