RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 PLCH2O75038 1416 aa25.85■■□□□ 1.73
CHMP1A-206ENST00000549139 MLECQ14165 292 aa25.84■■□□□ 1.73
CHMP1A-206ENST00000549139 SCAPERQ9BY12 1400 aa25.84■■□□□ 1.73
CHMP1A-206ENST00000549139 CDK13Q14004 1512 aaKnown RBP25.83■■□□□ 1.73
CHMP1A-206ENST00000549139 ARHGEF12Q9NZN5 1544 aa25.82■■□□□ 1.72
CHMP1A-206ENST00000549139 ATP10AO60312 1499 aa25.79■■□□□ 1.72
CHMP1A-206ENST00000549139 C9orf84Q5VXU9 1444 aa25.76■■□□□ 1.71
CHMP1A-206ENST00000549139 PREX1Q8TCU6 1659 aa25.74■■□□□ 1.71
CHMP1A-206ENST00000549139 UBTFP17480 764 aaKnown RBP25.73■■□□□ 1.71
CHMP1A-206ENST00000549139 EFCAB2Q5VUJ9 269 aa25.72■■□□□ 1.71
CHMP1A-206ENST00000549139 CEBPAP49715 358 aaPredicted RBP25.71■■□□□ 1.71
CHMP1A-206ENST00000549139 MYO5CQ9NQX4 1742 aa25.7■■□□□ 1.7
CHMP1A-206ENST00000549139 STRCQ7RTU9 1775 aa25.69■■□□□ 1.7
CHMP1A-206ENST00000549139 EHMT2Q96KQ7 1210 aa25.69■■□□□ 1.7
CHMP1A-206ENST00000549139 SETD1BQ9UPS6 1966 aaKnown RBP25.69■■□□□ 1.7
CHMP1A-206ENST00000549139 KDM5CP41229 1560 aa25.65■■□□□ 1.7
CHMP1A-206ENST00000549139 KIF14Q15058 1648 aa25.65■■□□□ 1.7
CHMP1A-206ENST00000549139 ZNF518AQ6AHZ1 1483 aa25.65■■□□□ 1.7
CHMP1A-206ENST00000549139 FMN1Q68DA7 1419 aa25.63■■□□□ 1.69
CHMP1A-206ENST00000549139 AFAP1Q8N556 730 aa25.63■■□□□ 1.69
CHMP1A-206ENST00000549139 DMRT2Q9Y5R5 561 aa25.62■■□□□ 1.69
CHMP1A-206ENST00000549139 UHRF1BP1Q6BDS2 1440 aa25.6■■□□□ 1.69
CHMP1A-206ENST00000549139 REREQ9P2R6 1566 aa25.6■■□□□ 1.69
CHMP1A-206ENST00000549139 DIP2CQ9Y2E4 1556 aa25.6■■□□□ 1.69
CHMP1A-206ENST00000549139 ARHGAP35Q9NRY4 1499 aa25.6■■□□□ 1.69
CHMP1A-206ENST00000549139 CDK11AQ9UQ88 783 aaPredicted RBP25.59■■□□□ 1.69
CHMP1A-206ENST00000549139 TROQ12816 1431 aaPredicted RBP25.59■■□□□ 1.69
CHMP1A-206ENST00000549139 ILDR2Q71H61 639 aa25.58■■□□□ 1.69
CHMP1A-206ENST00000549139 ATP1B4Q9UN42 357 aaPredicted RBP25.58■■□□□ 1.69
CHMP1A-206ENST00000549139 ARHGAP5Q13017 1502 aa25.58■■□□□ 1.68
CHMP1A-206ENST00000549139 DISP3Q9P2K9 1392 aa25.55■■□□□ 1.68
CHMP1A-206ENST00000549139 MLH3Q9UHC1 1453 aa25.54■■□□□ 1.68
CHMP1A-206ENST00000549139 PTPRTO14522 1441 aa25.54■■□□□ 1.68
CHMP1A-206ENST00000549139 ABCA6Q8N139 1617 aa25.53■■□□□ 1.68
CHMP1A-206ENST00000549139 C3P01024 1663 aa25.53■■□□□ 1.68
CHMP1A-206ENST00000549139 LRRIQ1Q96JM4 1722 aa25.52■■□□□ 1.68
CHMP1A-206ENST00000549139 CDC42BPBQ9Y5S2 1711 aa25.52■■□□□ 1.68
CHMP1A-206ENST00000549139 AGLP35573 1532 aa25.52■■□□□ 1.68
CHMP1A-206ENST00000549139 CLIP1P30622 1438 aa25.49■■□□□ 1.67
CHMP1A-206ENST00000549139 SOCS7O14512 581 aa25.48■■□□□ 1.67
CHMP1A-206ENST00000549139 TRAPPC8Q9Y2L5 1435 aa25.47■■□□□ 1.67
CHMP1A-206ENST00000549139 LTBP4Q8N2S1 1624 aa25.47■■□□□ 1.67
CHMP1A-206ENST00000549139 MYT1LQ9UL68 1186 aa25.46■■□□□ 1.67
CHMP1A-206ENST00000549139 ABCC1P33527 1531 aa25.45■■□□□ 1.66
CHMP1A-206ENST00000549139 PREX2Q70Z35 1606 aa25.44■■□□□ 1.66
CHMP1A-206ENST00000549139 NCOA1Q15788 1441 aa25.42■■□□□ 1.66
CHMP1A-206ENST00000549139 ITSN2Q9NZM3 1697 aa25.42■■□□□ 1.66
CHMP1A-206ENST00000549139 KIDINS220Q9ULH0 1771 aa25.41■■□□□ 1.66
CHMP1A-206ENST00000549139 IQSEC2Q5JU85 1478 aa25.4■■□□□ 1.66
CHMP1A-206ENST00000549139 CNTLNQ9NXG0 1405 aa25.38■■□□□ 1.65
CHMP1A-206ENST00000549139 ESF1Q9H501 851 aaKnown RBP25.38■■□□□ 1.65
CHMP1A-206ENST00000549139 SPATA31D1Q6ZQQ2 1576 aa25.38■■□□□ 1.65
CHMP1A-206ENST00000549139 NPATQ14207 1427 aa25.33■■□□□ 1.65
CHMP1A-206ENST00000549139 CDC42BPAQ5VT25 1732 aa25.33■■□□□ 1.65
CHMP1A-206ENST00000549139 CASKIN1Q8WXD9 1431 aa25.33■■□□□ 1.65
CHMP1A-206ENST00000549139 CCDC18Q5T9S5 1454 aa25.33■■□□□ 1.65
CHMP1A-206ENST00000549139 MROH2AA6NES4 1674 aa25.32■■□□□ 1.64
CHMP1A-206ENST00000549139 CAMSAP1Q5T5Y3 1602 aa25.31■■□□□ 1.64
CHMP1A-206ENST00000549139 SAMD9LQ8IVG5 1584 aa25.31■■□□□ 1.64
CHMP1A-206ENST00000549139 ZMYM3Q14202 1370 aa25.29■■□□□ 1.64
CHMP1A-206ENST00000549139 LOC105371045A0A1W2PR82 267 aa25.28■■□□□ 1.64
CHMP1A-206ENST00000549139 NCKAP5LQ9HCH0 1330 aa25.23■■□□□ 1.63
CHMP1A-206ENST00000549139 SYCP2Q9BX26 1530 aa25.22■■□□□ 1.63
CHMP1A-206ENST00000549139 GPATCH8Q9UKJ3 1502 aaKnown RBP25.22■■□□□ 1.63
CHMP1A-206ENST00000549139 SUPT6HQ7KZ85 1726 aaKnown RBP25.21■■□□□ 1.63
CHMP1A-206ENST00000549139 SPAG9O60271 1321 aaKnown RBP25.21■■□□□ 1.63
CHMP1A-206ENST00000549139 ZNF335Q9H4Z2 1342 aaPredicted RBP25.21■■□□□ 1.63
CHMP1A-206ENST00000549139 PLXNC1O60486 1568 aa25.2■■□□□ 1.62
CHMP1A-206ENST00000549139 ZNF777Q9ULD5 760 aaPredicted RBP25.2■■□□□ 1.62
CHMP1A-206ENST00000549139 ZNF142P52746 1687 aaPredicted RBP25.2■■□□□ 1.62
CHMP1A-206ENST00000549139 HNRNPMP52272 730 aaKnown RBP eCLIP25.19■■□□□ 1.62
CHMP1A-206ENST00000549139 PLA2R1Q13018 1463 aa25.19■■□□□ 1.62
CHMP1A-206ENST00000549139 CEP162Q5TB80 1403 aa25.19■■□□□ 1.62
CHMP1A-206ENST00000549139 CLTCQ00610 1675 aaKnown RBP25.18■■□□□ 1.62
CHMP1A-206ENST00000549139 FYCO1Q9BQS8 1478 aa25.18■■□□□ 1.62
CHMP1A-206ENST00000549139 PTPRKQ15262 1439 aa25.18■■□□□ 1.62
CHMP1A-206ENST00000549139 ATP7AQ04656 1500 aa25.17■■□□□ 1.62
CHMP1A-206ENST00000549139 TCOF1Q13428 1488 aaKnown RBP25.17■■□□□ 1.62
CHMP1A-206ENST00000549139 MYO3AQ8NEV4 1616 aa25.17■■□□□ 1.62
CHMP1A-206ENST00000549139 KIAA1107Q9UPP5 1409 aa25.17■■□□□ 1.62
CHMP1A-206ENST00000549139 PKD2Q13563 968 aa25.16■■□□□ 1.62
CHMP1A-206ENST00000549139 INO80Q9ULG1 1556 aaPredicted RBP25.16■■□□□ 1.62
CHMP1A-206ENST00000549139 A2MP01023 1474 aa25.15■■□□□ 1.62
CHMP1A-206ENST00000549139 CEP170BQ9Y4F5 1589 aaPredicted RBP25.14■■□□□ 1.62
CHMP1A-206ENST00000549139 UBAP1LF5GYI3 381 aa25.14■■□□□ 1.62
CHMP1A-206ENST00000549139 PLEKHH2Q8IVE3 1493 aa25.11■■□□□ 1.61
CHMP1A-206ENST00000549139 GGT6Q6P531 493 aa25.08■■□□□ 1.61
CHMP1A-206ENST00000549139 CFDP1Q9UEE9 299 aaPredicted RBP25.08■■□□□ 1.61
CHMP1A-206ENST00000549139 PPP6R1Q9UPN7 881 aa25.07■■□□□ 1.6
CHMP1A-206ENST00000549139 CCNB3Q8WWL7 1395 aa25.04■■□□□ 1.6
CHMP1A-206ENST00000549139 A2ML1A8K2U0 1454 aa25.03■■□□□ 1.6
CHMP1A-206ENST00000549139 ADGBQ8N7X0 1667 aa25.03■■□□□ 1.6
CHMP1A-206ENST00000549139 DNMT1P26358 1616 aaKnown RBP25.02■■□□□ 1.6
CHMP1A-206ENST00000549139 MBD5Q9P267 1494 aa25■■□□□ 1.59
CHMP1A-206ENST00000549139 ZNF644Q9H582 1327 aaPredicted RBP24.98■■□□□ 1.59
CHMP1A-206ENST00000549139 NEURL4Q96JN8 1562 aa24.96■■□□□ 1.59
CHMP1A-206ENST00000549139 RTEL1-TNFRSF6BF6WH68 1400 aa24.95■■□□□ 1.59
CHMP1A-206ENST00000549139 DHX29Q7Z478 1369 aaKnown RBP24.94■■□□□ 1.58
CHMP1A-206ENST00000549139 TIAM1Q13009 1591 aa24.94■■□□□ 1.58
CHMP1A-206ENST00000549139 HSPA1LP34931 641 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms