RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 ILDR2Q71H61 639 aa11.54□□□□□ -0.56
LIMA1-204ENST00000549064 KCNH8Q96L42 1107 aa11.54□□□□□ -0.56
LIMA1-204ENST00000549064 UGGT2Q9NYU1 1516 aa11.54□□□□□ -0.56
LIMA1-204ENST00000549064 RNF39Q9H2S5 420 aa11.53□□□□□ -0.56
LIMA1-204ENST00000549064 MADDQ8WXG6 1647 aa11.53□□□□□ -0.56
LIMA1-204ENST00000549064 BCORL1Q5H9F3 1711 aa11.52□□□□□ -0.57
LIMA1-204ENST00000549064 ABCB7O75027 752 aa11.51□□□□□ -0.57
LIMA1-204ENST00000549064 ARAP3Q8WWN8 1544 aa11.5□□□□□ -0.57
LIMA1-204ENST00000549064 SOCS7O14512 581 aa11.49□□□□□ -0.57
LIMA1-204ENST00000549064 DISP3Q9P2K9 1392 aa11.49□□□□□ -0.57
LIMA1-204ENST00000549064 RIMS1Q86UR5 1692 aaKnown RBP11.49□□□□□ -0.57
LIMA1-204ENST00000549064 HSPA2P54652 639 aa11.48□□□□□ -0.57
LIMA1-204ENST00000549064 ABCA8O94911 1581 aa11.48□□□□□ -0.57
LIMA1-204ENST00000549064 ZBTB12Q9Y330 459 aaPredicted RBP11.47□□□□□ -0.57
LIMA1-204ENST00000549064 KLHL34Q8N239 644 aa11.46□□□□□ -0.57
LIMA1-204ENST00000549064 CERKQ8TCT0 537 aa11.46□□□□□ -0.57
LIMA1-204ENST00000549064 RAPGEF3O95398 923 aa11.45□□□□□ -0.58
LIMA1-204ENST00000549064 FRMPD1Q5SYB0 1578 aa11.45□□□□□ -0.58
LIMA1-204ENST00000549064 CTTNBP2Q8WZ74 1663 aa11.44□□□□□ -0.58
LIMA1-204ENST00000549064 SPOCK2Q92563 424 aa11.44□□□□□ -0.58
LIMA1-204ENST00000549064 RAPGEF2Q9Y4G8 1499 aa11.44□□□□□ -0.58
LIMA1-204ENST00000549064 ARID4BQ4LE39 1312 aaPredicted RBP11.43□□□□□ -0.58
LIMA1-204ENST00000549064 ARID3CA6NKF2 412 aa11.43□□□□□ -0.58
LIMA1-204ENST00000549064 ABCA9Q8IUA7 1624 aa11.42□□□□□ -0.58
LIMA1-204ENST00000549064 ECM2O94769 699 aaPredicted RBP11.41□□□□□ -0.58
LIMA1-204ENST00000549064 BCANQ96GW7 911 aa11.41□□□□□ -0.58
LIMA1-204ENST00000549064 C1QBPQ07021 282 aaKnown RBP11.4□□□□□ -0.58
LIMA1-204ENST00000549064 VSIG10Q8N0Z9 540 aa11.4□□□□□ -0.58
LIMA1-204ENST00000549064 SPATA31D1Q6ZQQ2 1576 aa11.4□□□□□ -0.58
LIMA1-204ENST00000549064 SIGLEC1Q9BZZ2 1709 aa11.39□□□□□ -0.59
LIMA1-204ENST00000549064 ARHGEF40Q8TER5 1519 aa11.39□□□□□ -0.59
LIMA1-204ENST00000549064 GOLGA3Q08378 1498 aa11.38□□□□□ -0.59
LIMA1-204ENST00000549064 PRKCSHP14314 528 aaPredicted RBP11.37□□□□□ -0.59
LIMA1-204ENST00000549064 ATP10BO94823 1461 aa11.37□□□□□ -0.59
LIMA1-204ENST00000549064 ZNF692Q9BU19 519 aaPredicted RBP11.36□□□□□ -0.59
LIMA1-204ENST00000549064 PHLDB1Q86UU1 1377 aa11.36□□□□□ -0.59
LIMA1-204ENST00000549064 NEO1Q92859 1461 aa11.36□□□□□ -0.59
LIMA1-204ENST00000549064 RICTORQ6R327 1708 aa11.35□□□□□ -0.59
LIMA1-204ENST00000549064 BBXQ8WY36 941 aaPredicted RBP11.35□□□□□ -0.59
LIMA1-204ENST00000549064 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.35□□□□□ -0.59
LIMA1-204ENST00000549064 FER1L4A9Z1Z3 1794 aa11.34□□□□□ -0.59
LIMA1-204ENST00000549064 PAXIP1Q6ZW49 1069 aaPredicted RBP11.33□□□□□ -0.6
LIMA1-204ENST00000549064 PLCD3Q8N3E9 789 aa11.32□□□□□ -0.6
LIMA1-204ENST00000549064 STAG3Q9UJ98 1225 aa11.32□□□□□ -0.6
LIMA1-204ENST00000549064 STRCQ7RTU9 1775 aa11.31□□□□□ -0.6
LIMA1-204ENST00000549064 CFAP44Q96MT7 982 aa11.31□□□□□ -0.6
LIMA1-204ENST00000549064 FANCAO15360 1455 aa11.31□□□□□ -0.6
LIMA1-204ENST00000549064 PREX1Q8TCU6 1659 aa11.3□□□□□ -0.6
LIMA1-204ENST00000549064 TTC37Q6PGP7 1564 aa11.3□□□□□ -0.6
LIMA1-204ENST00000549064 RGL2O15211 777 aa11.3□□□□□ -0.6
LIMA1-204ENST00000549064 MLECQ14165 292 aa11.3□□□□□ -0.6
LIMA1-204ENST00000549064 P3H3Q8IVL6 736 aa11.3□□□□□ -0.6
LIMA1-204ENST00000549064 KDM2AQ9Y2K7 1162 aa11.3□□□□□ -0.6
LIMA1-204ENST00000549064 YEATS2Q9ULM3 1422 aa11.29□□□□□ -0.6
LIMA1-204ENST00000549064 TAOK2Q9UL54 1235 aa11.29□□□□□ -0.6
LIMA1-204ENST00000549064 DENND4BO75064 1496 aaPredicted RBP11.29□□□□□ -0.6
LIMA1-204ENST00000549064 POGZQ7Z3K3 1410 aa11.28□□□□□ -0.6
LIMA1-204ENST00000549064 ZFYVE16Q7Z3T8 1539 aa11.28□□□□□ -0.6
LIMA1-204ENST00000549064 RAPGEF6Q8TEU7 1601 aa11.27□□□□□ -0.6
LIMA1-204ENST00000549064 AKNAQ7Z591 1439 aa11.27□□□□□ -0.6
LIMA1-204ENST00000549064 FHOD3Q2V2M9 1422 aa11.26□□□□□ -0.61
LIMA1-204ENST00000549064 ZMYM4Q5VZL5 1548 aa11.26□□□□□ -0.61
LIMA1-204ENST00000549064 SSUH2Q9Y2M2 353 aa11.26□□□□□ -0.61
LIMA1-204ENST00000549064 EFCAB5A4FU69 1503 aa11.25□□□□□ -0.61
LIMA1-204ENST00000549064 SPDYE2BA6NHP3 402 aa11.25□□□□□ -0.61
LIMA1-204ENST00000549064 SPDYE6P0CI01 402 aa11.25□□□□□ -0.61
LIMA1-204ENST00000549064 SPDYE2Q495Y8 402 aa11.25□□□□□ -0.61
LIMA1-204ENST00000549064 MIER1Q8N108 512 aa11.25□□□□□ -0.61
LIMA1-204ENST00000549064 CFAP74Q9C0B2 1584 aa11.24□□□□□ -0.61
LIMA1-204ENST00000549064 HECW1Q76N89 1606 aa11.24□□□□□ -0.61
LIMA1-204ENST00000549064 CEBPAP49715 358 aaPredicted RBP11.24□□□□□ -0.61
LIMA1-204ENST00000549064 DSG3P32926 999 aa11.23□□□□□ -0.61
LIMA1-204ENST00000549064 ARHGEF12Q9NZN5 1544 aa11.23□□□□□ -0.61
LIMA1-204ENST00000549064 NUP153P49790 1475 aaKnown RBP11.22□□□□□ -0.61
LIMA1-204ENST00000549064 LTBP4Q8N2S1 1624 aa11.21□□□□□ -0.61
LIMA1-204ENST00000549064 SAMD9Q5K651 1589 aa11.21□□□□□ -0.61
LIMA1-204ENST00000549064 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.21□□□□□ -0.61
LIMA1-204ENST00000549064 PRXQ9BXM0 1461 aa11.2□□□□□ -0.62
LIMA1-204ENST00000549064 FAM9AQ8IZU1 332 aaPredicted RBP11.2□□□□□ -0.62
LIMA1-204ENST00000549064 MAGI2Q86UL8 1455 aa11.19□□□□□ -0.62
LIMA1-204ENST00000549064 UHRF1BP1Q6BDS2 1440 aa11.18□□□□□ -0.62
LIMA1-204ENST00000549064 TSHZ2Q9NRE2 1034 aa11.18□□□□□ -0.62
LIMA1-204ENST00000549064 CIZ1Q9ULV3 898 aaPredicted RBP11.18□□□□□ -0.62
LIMA1-204ENST00000549064 PTPRTO14522 1441 aa11.18□□□□□ -0.62
LIMA1-204ENST00000549064 SETD1BQ9UPS6 1966 aaKnown RBP11.17□□□□□ -0.62
LIMA1-204ENST00000549064 SPRYD3Q8NCJ5 442 aa11.17□□□□□ -0.62
LIMA1-204ENST00000549064 TPRNQ4KMQ1 711 aa11.16□□□□□ -0.62
LIMA1-204ENST00000549064 ATP10AO60312 1499 aa11.16□□□□□ -0.62
LIMA1-204ENST00000549064 C3P01024 1663 aa11.16□□□□□ -0.62
LIMA1-204ENST00000549064 C9orf84Q5VXU9 1444 aa11.16□□□□□ -0.62
LIMA1-204ENST00000549064 PLEKHD1A6NEE1 506 aa11.15□□□□□ -0.62
LIMA1-204ENST00000549064 SCAPERQ9BY12 1400 aa11.15□□□□□ -0.62
LIMA1-204ENST00000549064 IQSEC2Q5JU85 1478 aa11.14□□□□□ -0.63
LIMA1-204ENST00000549064 CHGAP10645 457 aaKnown RBP11.14□□□□□ -0.63
LIMA1-204ENST00000549064 RANGAP1P46060 587 aaPredicted RBP11.13□□□□□ -0.63
LIMA1-204ENST00000549064 NCOA1Q15788 1441 aa11.1□□□□□ -0.63
LIMA1-204ENST00000549064 PLCH2O75038 1416 aa11.09□□□□□ -0.63
LIMA1-204ENST00000549064 CDK13Q14004 1512 aaKnown RBP11.09□□□□□ -0.63
LIMA1-204ENST00000549064 MYO5CQ9NQX4 1742 aa11.09□□□□□ -0.63
LIMA1-204ENST00000549064 MED1Q15648 1581 aaPredicted RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms