RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 SLC4A1APQ9BWU0 796 aaKnown RBP21.94■■□□□ 1.1
LDLR-204ENST00000545707 ABCC5O15440 1437 aa21.93■■□□□ 1.1
LDLR-204ENST00000545707 MRC2Q9UBG0 1479 aa21.92■■□□□ 1.1
LDLR-204ENST00000545707 ANKRD30BQ9BXX2 1392 aa21.92■■□□□ 1.1
LDLR-204ENST00000545707 RBM19Q9Y4C8 960 aaKnown RBP21.91■■□□□ 1.1
LDLR-204ENST00000545707 DISP1Q96F81 1524 aa21.9■■□□□ 1.1
LDLR-204ENST00000545707 FAM9BQ8IZU0 186 aa21.89■■□□□ 1.1
LDLR-204ENST00000545707 CNTLNQ9NXG0 1405 aa21.89■■□□□ 1.09
LDLR-204ENST00000545707 NUP153P49790 1475 aaKnown RBP21.89■■□□□ 1.09
LDLR-204ENST00000545707 CCDC7Q96M83 1385 aa21.89■■□□□ 1.09
LDLR-204ENST00000545707 PRKRIP1Q9H875 184 aaPredicted RBP21.87■■□□□ 1.09
LDLR-204ENST00000545707 CNGB1Q14028 1251 aaPredicted RBP21.87■■□□□ 1.09
LDLR-204ENST00000545707 ANP32EQ9BTT0 268 aa21.87■■□□□ 1.09
LDLR-204ENST00000545707 ZNF777Q9ULD5 760 aaPredicted RBP21.87■■□□□ 1.09
LDLR-204ENST00000545707 ROCK1Q13464 1354 aa21.86■■□□□ 1.09
LDLR-204ENST00000545707 KIAA0586Q9BVV6 1533 aa21.85■■□□□ 1.09
LDLR-204ENST00000545707 RPRD2Q5VT52 1461 aaKnown RBP21.85■■□□□ 1.09
LDLR-204ENST00000545707 NCOA1Q15788 1441 aa21.85■■□□□ 1.09
LDLR-204ENST00000545707 PRG4Q92954 1404 aaPredicted RBP21.85■■□□□ 1.09
LDLR-204ENST00000545707 CDK11AQ9UQ88 783 aaPredicted RBP21.84■■□□□ 1.09
LDLR-204ENST00000545707 KIAA0556O60303 1618 aa21.83■■□□□ 1.09
LDLR-204ENST00000545707 MRS2Q9HD23 443 aa21.83■■□□□ 1.09
LDLR-204ENST00000545707 CFDP1Q9UEE9 299 aaPredicted RBP21.82■■□□□ 1.08
LDLR-204ENST00000545707 KIF7Q2M1P5 1343 aa21.82■■□□□ 1.08
LDLR-204ENST00000545707 TEX14Q8IWB6 1497 aa21.81■■□□□ 1.08
LDLR-204ENST00000545707 FBLN2P98095 1184 aa21.81■■□□□ 1.08
LDLR-204ENST00000545707 ZNF326Q5BKZ1 582 aaKnown RBP21.81■■□□□ 1.08
LDLR-204ENST00000545707 IFT140Q96RY7 1462 aa21.81■■□□□ 1.08
LDLR-204ENST00000545707 DNMT1P26358 1616 aaKnown RBP21.8■■□□□ 1.08
LDLR-204ENST00000545707 POLR3GLQ9BT43 218 aa21.79■■□□□ 1.08
LDLR-204ENST00000545707 GRIN2AQ12879 1464 aa21.77■■□□□ 1.08
LDLR-204ENST00000545707 RAPGEF6Q8TEU7 1601 aa21.77■■□□□ 1.08
LDLR-204ENST00000545707 PLB1Q6P1J6 1458 aa21.77■■□□□ 1.07
LDLR-204ENST00000545707 SPATA31E1Q6ZUB1 1445 aa21.76■■□□□ 1.07
LDLR-204ENST00000545707 CHMP7Q8WUX9 453 aaPredicted RBP21.76■■□□□ 1.07
LDLR-204ENST00000545707 PZPP20742 1482 aa21.74■■□□□ 1.07
LDLR-204ENST00000545707 CAMSAP2Q08AD1 1489 aa21.73■■□□□ 1.07
LDLR-204ENST00000545707 PKD2Q13563 968 aa21.73■■□□□ 1.07
LDLR-204ENST00000545707 TROQ12816 1431 aaPredicted RBP21.73■■□□□ 1.07
LDLR-204ENST00000545707 GPATCH8Q9UKJ3 1502 aaKnown RBP21.7■■□□□ 1.06
LDLR-204ENST00000545707 SENP3-EIF4A1A0A087X0R7 540 aa21.7■■□□□ 1.06
LDLR-204ENST00000545707 EIF4G3O43432 1585 aaKnown RBP21.68■■□□□ 1.06
LDLR-204ENST00000545707 KIF14Q15058 1648 aa21.67■■□□□ 1.06
LDLR-204ENST00000545707 JPH4Q96JJ6 628 aa21.66■■□□□ 1.06
LDLR-204ENST00000545707 ZBED9Q6R2W3 1325 aa21.65■■□□□ 1.06
LDLR-204ENST00000545707 KIAA1107Q9UPP5 1409 aa21.64■■□□□ 1.05
LDLR-204ENST00000545707 USP47Q96K76 1375 aa21.64■■□□□ 1.05
LDLR-204ENST00000545707 MSH5O43196 834 aa21.64■■□□□ 1.05
LDLR-204ENST00000545707 B4GALNT3Q6L9W6 998 aa21.63■■□□□ 1.05
LDLR-204ENST00000545707 CEP170Q5SW79 1584 aa21.63■■□□□ 1.05
LDLR-204ENST00000545707 PPP4R2Q9NY27 417 aa21.63■■□□□ 1.05
LDLR-204ENST00000545707 ANKRD30AQ9BXX3 1397 aa21.61■■□□□ 1.05
LDLR-204ENST00000545707 DHX29Q7Z478 1369 aaKnown RBP21.6■■□□□ 1.05
LDLR-204ENST00000545707 KDM2AQ9Y2K7 1162 aa21.6■■□□□ 1.05
LDLR-204ENST00000545707 ANKRD50Q9ULJ7 1429 aa21.6■■□□□ 1.05
LDLR-204ENST00000545707 PLEKHD1A6NEE1 506 aa21.59■■□□□ 1.05
LDLR-204ENST00000545707 NUP155O75694 1391 aa21.59■■□□□ 1.05
LDLR-204ENST00000545707 ERCC6Q03468 1493 aa21.58■■□□□ 1.04
LDLR-204ENST00000545707 MBD5Q9P267 1494 aa21.58■■□□□ 1.04
LDLR-204ENST00000545707 BCORL1Q5H9F3 1711 aa21.56■■□□□ 1.04
LDLR-204ENST00000545707 ADGRL2O95490 1459 aa21.56■■□□□ 1.04
LDLR-204ENST00000545707 SYNJ2O15056 1496 aa21.56■■□□□ 1.04
LDLR-204ENST00000545707 HNRNPMP52272 730 aaKnown RBP eCLIP21.55■■□□□ 1.04
LDLR-204ENST00000545707 ERICH6BQ5W0A0 696 aa21.55■■□□□ 1.04
LDLR-204ENST00000545707 CARMIL2Q6F5E8 1435 aa21.55■■□□□ 1.04
LDLR-204ENST00000545707 MAGI1Q96QZ7 1491 aaPredicted RBP21.55■■□□□ 1.04
LDLR-204ENST00000545707 ITSN2Q9NZM3 1697 aa21.54■■□□□ 1.04
LDLR-204ENST00000545707 CARD11Q9BXL7 1154 aa21.54■■□□□ 1.04
LDLR-204ENST00000545707 ADGBQ8N7X0 1667 aa21.53■■□□□ 1.04
LDLR-204ENST00000545707 TSPY4P0CV99 314 aa21.51■■□□□ 1.03
LDLR-204ENST00000545707 TSPY10P0CW01 314 aa21.51■■□□□ 1.03
LDLR-204ENST00000545707 C9orf84Q5VXU9 1444 aa21.51■■□□□ 1.03
LDLR-204ENST00000545707 POLR1AO95602 1720 aaPredicted RBP21.5■■□□□ 1.03
LDLR-204ENST00000545707 ST20-MTHFSA0A0A6YYL1 179 aa21.49■■□□□ 1.03
LDLR-204ENST00000545707 DCAF11Q8TEB1 546 aa21.49■■□□□ 1.03
LDLR-204ENST00000545707 ATP10BO94823 1461 aa21.49■■□□□ 1.03
LDLR-204ENST00000545707 ADCY10Q96PN6 1610 aa21.48■■□□□ 1.03
LDLR-204ENST00000545707 CROCC2H7BZ55 1655 aa21.48■■□□□ 1.03
LDLR-204ENST00000545707 KDM5CP41229 1560 aa21.47■■□□□ 1.03
LDLR-204ENST00000545707 NUP160Q12769 1436 aa21.47■■□□□ 1.03
LDLR-204ENST00000545707 FANCIQ9NVI1 1328 aa21.46■■□□□ 1.03
LDLR-204ENST00000545707 TMC1Q8TDI8 760 aa21.46■■□□□ 1.03
LDLR-204ENST00000545707 ABCC10Q5T3U5 1492 aa21.46■■□□□ 1.03
LDLR-204ENST00000545707 PNISRQ8TF01 805 aaKnown RBP21.45■■□□□ 1.02
LDLR-204ENST00000545707 KIF15Q9NS87 1388 aa21.44■■□□□ 1.02
LDLR-204ENST00000545707 CDC42BPAQ5VT25 1732 aa21.43■■□□□ 1.02
LDLR-204ENST00000545707 NUDCQ9Y266 331 aa21.43■■□□□ 1.02
LDLR-204ENST00000545707 UHRF1BP1Q6BDS2 1440 aa21.42■■□□□ 1.02
LDLR-204ENST00000545707 SMG6Q86US8 1419 aaKnown RBP21.42■■□□□ 1.02
LDLR-204ENST00000545707 RALGAPBQ86X10 1494 aa21.41■■□□□ 1.02
LDLR-204ENST00000545707 ARID4BQ4LE39 1312 aaPredicted RBP21.41■■□□□ 1.02
LDLR-204ENST00000545707 ABCA8O94911 1581 aa21.4■■□□□ 1.02
LDLR-204ENST00000545707 RGL3Q3MIN7 710 aa21.4■■□□□ 1.02
LDLR-204ENST00000545707 SHANK2Q9UPX8 1470 aa21.37■■□□□ 1.01
LDLR-204ENST00000545707 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.36■■□□□ 1.017e-10■■□□□ 13.2
LDLR-204ENST00000545707 SALL2Q9Y467 1007 aaPredicted RBP21.36■■□□□ 1.01
LDLR-204ENST00000545707 ROCK2O75116 1388 aaKnown RBP21.35■■□□□ 1.01
LDLR-204ENST00000545707 ERICH6Q7L0X2 663 aa21.35■■□□□ 1.01
LDLR-204ENST00000545707 NBPF1Q3BBV0 1214 aa21.34■■□□□ 1.01
LDLR-204ENST00000545707 PTPRGP23470 1445 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms