RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 GABBR2O75899 941 aa8.84□□□□□ -0.99
NPIPB3-211ENST00000542953 PCF11O94913 1555 aaKnown RBP8.84□□□□□ -0.99
NPIPB3-211ENST00000542953 IGF1RP08069 1367 aa8.83□□□□□ -1
NPIPB3-211ENST00000542953 DISP3Q9P2K9 1392 aa8.83□□□□□ -1
NPIPB3-211ENST00000542953 WDR7Q9Y4E6 1490 aa8.83□□□□□ -1
NPIPB3-211ENST00000542953 ADAMTSL3P82987 1691 aa8.82□□□□□ -1
NPIPB3-211ENST00000542953 KIF21BO75037 1637 aa8.81□□□□□ -1
NPIPB3-211ENST00000542953 DISP1Q96F81 1524 aa8.8□□□□□ -1
NPIPB3-211ENST00000542953 ZCCHC11Q5TAX3 1644 aaKnown RBP8.8□□□□□ -1
NPIPB3-211ENST00000542953 LHX8Q68G74 356 aa8.8□□□□□ -1
NPIPB3-211ENST00000542953 CD109Q6YHK3 1445 aa8.8□□□□□ -1
NPIPB3-211ENST00000542953 CERKQ8TCT0 537 aa8.79□□□□□ -1
NPIPB3-211ENST00000542953 ARAP3Q8WWN8 1544 aa8.79□□□□□ -1
NPIPB3-211ENST00000542953 TTBK1Q5TCY1 1321 aaPredicted RBP8.79□□□□□ -1
NPIPB3-211ENST00000542953 IQGAP2Q13576 1575 aa8.78□□□□□ -1
NPIPB3-211ENST00000542953 PRR29P0C7W0 189 aa8.78□□□□□ -1
NPIPB3-211ENST00000542953 CFAP43Q8NDM7 1665 aa8.78□□□□□ -1
NPIPB3-211ENST00000542953 CHADLQ6NUI6 762 aa8.76□□□□□ -1.01
NPIPB3-211ENST00000542953 KIF27Q86VH2 1401 aa8.76□□□□□ -1.01
NPIPB3-211ENST00000542953 UGGT2Q9NYU1 1516 aa8.75□□□□□ -1.01
NPIPB3-211ENST00000542953 CARMIL1Q5VZK9 1371 aa8.74□□□□□ -1.01
NPIPB3-211ENST00000542953 SPATA31D1Q6ZQQ2 1576 aa8.74□□□□□ -1.01
NPIPB3-211ENST00000542953 BCORL1Q5H9F3 1711 aa8.74□□□□□ -1.01
NPIPB3-211ENST00000542953 PHLDB1Q86UU1 1377 aa8.73□□□□□ -1.01
NPIPB3-211ENST00000542953 MADDQ8WXG6 1647 aa8.73□□□□□ -1.01
NPIPB3-211ENST00000542953 CLCN6P51797 869 aa8.73□□□□□ -1.01
NPIPB3-211ENST00000542953 HSPA2P54652 639 aa8.71□□□□□ -1.02
NPIPB3-211ENST00000542953 KIAA0556O60303 1618 aa8.71□□□□□ -1.02
NPIPB3-211ENST00000542953 ABCA8O94911 1581 aa8.68□□□□□ -1.02
NPIPB3-211ENST00000542953 CD44P16070 742 aaKnown RBP8.67□□□□□ -1.02
NPIPB3-211ENST00000542953 FRMPD1Q5SYB0 1578 aa8.67□□□□□ -1.02
NPIPB3-211ENST00000542953 NEO1Q92859 1461 aa8.67□□□□□ -1.02
NPIPB3-211ENST00000542953 KCNH8Q96L42 1107 aa8.67□□□□□ -1.02
NPIPB3-211ENST00000542953 ARHGEF40Q8TER5 1519 aa8.66□□□□□ -1.02
NPIPB3-211ENST00000542953 RAPGEF3O95398 923 aa8.66□□□□□ -1.02
NPIPB3-211ENST00000542953 FARP1Q9Y4F1 1045 aaPredicted RBP8.66□□□□□ -1.02
NPIPB3-211ENST00000542953 RIMS1Q86UR5 1692 aaKnown RBP8.65□□□□□ -1.02
NPIPB3-211ENST00000542953 YEATS2Q9ULM3 1422 aa8.64□□□□□ -1.03
NPIPB3-211ENST00000542953 ARID4BQ4LE39 1312 aaPredicted RBP8.64□□□□□ -1.03
NPIPB3-211ENST00000542953 ABCA9Q8IUA7 1624 aa8.64□□□□□ -1.03
NPIPB3-211ENST00000542953 POTEIP0CG38 1075 aa8.62□□□□□ -1.03
NPIPB3-211ENST00000542953 IQSEC2Q5JU85 1478 aa8.62□□□□□ -1.03
NPIPB3-211ENST00000542953 POGZQ7Z3K3 1410 aa8.62□□□□□ -1.03
NPIPB3-211ENST00000542953 TTC37Q6PGP7 1564 aa8.61□□□□□ -1.03
NPIPB3-211ENST00000542953 RAPGEF2Q9Y4G8 1499 aa8.61□□□□□ -1.03
NPIPB3-211ENST00000542953 FHOD3Q2V2M9 1422 aa8.61□□□□□ -1.03
NPIPB3-211ENST00000542953 FANCAO15360 1455 aa8.6□□□□□ -1.03
NPIPB3-211ENST00000542953 GOLGA3Q08378 1498 aa8.6□□□□□ -1.03
NPIPB3-211ENST00000542953 ATP10BO94823 1461 aa8.59□□□□□ -1.03
NPIPB3-211ENST00000542953 PTPRTO14522 1441 aa8.59□□□□□ -1.03
NPIPB3-211ENST00000542953 AKNAQ7Z591 1439 aa8.59□□□□□ -1.03
NPIPB3-211ENST00000542953 ZMYM4Q5VZL5 1548 aa8.59□□□□□ -1.03
NPIPB3-211ENST00000542953 STRCQ7RTU9 1775 aa8.58□□□□□ -1.04
NPIPB3-211ENST00000542953 LTBP4Q8N2S1 1624 aa8.58□□□□□ -1.04
NPIPB3-211ENST00000542953 DENND4BO75064 1496 aaPredicted RBP8.57□□□□□ -1.04
NPIPB3-211ENST00000542953 PREX1Q8TCU6 1659 aa8.57□□□□□ -1.04
NPIPB3-211ENST00000542953 SUPT5HO00267 1087 aaKnown RBP8.57□□□□□ -1.04
NPIPB3-211ENST00000542953 DCBLD2Q96PD2 775 aa8.57□□□□□ -1.04
NPIPB3-211ENST00000542953 RICTORQ6R327 1708 aa8.57□□□□□ -1.04
NPIPB3-211ENST00000542953 SIGLEC1Q9BZZ2 1709 aa8.57□□□□□ -1.04
NPIPB3-211ENST00000542953 ARHGEF12Q9NZN5 1544 aa8.56□□□□□ -1.04
NPIPB3-211ENST00000542953 MAGI2Q86UL8 1455 aa8.56□□□□□ -1.04
NPIPB3-211ENST00000542953 EFCAB5A4FU69 1503 aa8.55□□□□□ -1.04
NPIPB3-211ENST00000542953 ZNF579Q8NAF0 562 aaKnown RBP8.55□□□□□ -1.04
NPIPB3-211ENST00000542953 ZFYVE16Q7Z3T8 1539 aa8.54□□□□□ -1.04
NPIPB3-211ENST00000542953 FER1L4A9Z1Z3 1794 aa8.54□□□□□ -1.04
NPIPB3-211ENST00000542953 UHRF1BP1Q6BDS2 1440 aa8.54□□□□□ -1.04
NPIPB3-211ENST00000542953 CTTNBP2Q8WZ74 1663 aa8.51□□□□□ -1.05
NPIPB3-211ENST00000542953 STAG3Q9UJ98 1225 aa8.51□□□□□ -1.05
NPIPB3-211ENST00000542953 CFAP74Q9C0B2 1584 aa8.51□□□□□ -1.05
NPIPB3-211ENST00000542953 NCOA1Q15788 1441 aa8.49□□□□□ -1.05
NPIPB3-211ENST00000542953 ARID3CA6NKF2 412 aa8.49□□□□□ -1.05
NPIPB3-211ENST00000542953 MLECQ14165 292 aa8.49□□□□□ -1.05
NPIPB3-211ENST00000542953 ZRANB1Q9UGI0 708 aa8.49□□□□□ -1.05
NPIPB3-211ENST00000542953 MED1Q15648 1581 aaPredicted RBP8.48□□□□□ -1.05
NPIPB3-211ENST00000542953 C9orf84Q5VXU9 1444 aa8.48□□□□□ -1.05
NPIPB3-211ENST00000542953 HECW1Q76N89 1606 aa8.48□□□□□ -1.05
NPIPB3-211ENST00000542953 CEBPAP49715 358 aaPredicted RBP8.48□□□□□ -1.05
NPIPB3-211ENST00000542953 ATP10AO60312 1499 aa8.48□□□□□ -1.05
NPIPB3-211ENST00000542953 SETD1BQ9UPS6 1966 aaKnown RBP8.48□□□□□ -1.05
NPIPB3-211ENST00000542953 NUP153P49790 1475 aaKnown RBP8.46□□□□□ -1.05
NPIPB3-211ENST00000542953 FAM9AQ8IZU1 332 aaPredicted RBP8.46□□□□□ -1.06
NPIPB3-211ENST00000542953 CREBZFQ9NS37 354 aa8.46□□□□□ -1.06
NPIPB3-211ENST00000542953 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.45□□□□□ -1.06
NPIPB3-211ENST00000542953 RAPGEF6Q8TEU7 1601 aa8.45□□□□□ -1.06
NPIPB3-211ENST00000542953 UBAP1LF5GYI3 381 aa8.45□□□□□ -1.06
NPIPB3-211ENST00000542953 PRXQ9BXM0 1461 aa8.45□□□□□ -1.06
NPIPB3-211ENST00000542953 TRAPPC8Q9Y2L5 1435 aa8.44□□□□□ -1.06
NPIPB3-211ENST00000542953 SCAPERQ9BY12 1400 aa8.43□□□□□ -1.06
NPIPB3-211ENST00000542953 SAMD9Q5K651 1589 aa8.43□□□□□ -1.06
NPIPB3-211ENST00000542953 PAK3O75914 559 aaPredicted RBP8.42□□□□□ -1.06
NPIPB3-211ENST00000542953 PLSCR2Q9NRY7 297 aa8.42□□□□□ -1.06
NPIPB3-211ENST00000542953 REREQ9P2R6 1566 aa8.42□□□□□ -1.06
NPIPB3-211ENST00000542953 PLCH2O75038 1416 aa8.41□□□□□ -1.06
NPIPB3-211ENST00000542953 ZNF335Q9H4Z2 1342 aaPredicted RBP8.41□□□□□ -1.06
NPIPB3-211ENST00000542953 PLEKHD1A6NEE1 506 aa8.41□□□□□ -1.06
NPIPB3-211ENST00000542953 GALR2O43603 387 aaPredicted RBP8.41□□□□□ -1.06
NPIPB3-211ENST00000542953 C3P01024 1663 aa8.4□□□□□ -1.06
NPIPB3-211ENST00000542953 HSPA1LP34931 641 aa8.4□□□□□ -1.06
NPIPB3-211ENST00000542953 P3H3Q8IVL6 736 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms