RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 FGD6Q6ZV73 1430 aa13.75□□□□□ -0.21
TOP3A-208ENST00000542570 IFT140Q96RY7 1462 aa13.75□□□□□ -0.21
TOP3A-208ENST00000542570 NEUROD2Q15784 382 aa13.75□□□□□ -0.21
TOP3A-208ENST00000542570 C14orf37Q86TY3 774 aa13.75□□□□□ -0.21
TOP3A-208ENST00000542570 ABCA10Q8WWZ4 1543 aa13.75□□□□□ -0.21
TOP3A-208ENST00000542570 FAM69CQ0P6D2 419 aa13.75□□□□□ -0.21
TOP3A-208ENST00000542570 SOX12O15370 315 aa13.74□□□□□ -0.21
TOP3A-208ENST00000542570 ERICH3Q5RHP9 1530 aa13.73□□□□□ -0.21
TOP3A-208ENST00000542570 NCOA2Q15596 1464 aa13.73□□□□□ -0.21
TOP3A-208ENST00000542570 WASHC2CQ9Y4E1 1318 aa13.73□□□□□ -0.21
TOP3A-208ENST00000542570 CASKIN1Q8WXD9 1431 aa13.72□□□□□ -0.21
TOP3A-208ENST00000542570 CANXP27824 592 aaKnown RBP13.72□□□□□ -0.21
TOP3A-208ENST00000542570 POGKQ9P215 609 aa13.72□□□□□ -0.21
TOP3A-208ENST00000542570 LAMC3Q9Y6N6 1575 aa13.72□□□□□ -0.21
TOP3A-208ENST00000542570 CDK13Q14004 1512 aaKnown RBP13.71□□□□□ -0.21
TOP3A-208ENST00000542570 NUTM2FA1L443 756 aa13.71□□□□□ -0.21
TOP3A-208ENST00000542570 PLB1Q6P1J6 1458 aa13.7□□□□□ -0.22
TOP3A-208ENST00000542570 MYOM3Q5VTT5 1437 aa13.7□□□□□ -0.22
TOP3A-208ENST00000542570 WDR43Q15061 677 aaKnown RBP eCLIP13.69□□□□□ -0.22
TOP3A-208ENST00000542570 KNSTRNQ9Y448 316 aa13.69□□□□□ -0.22
TOP3A-208ENST00000542570 RAPGEF3O95398 923 aa13.68□□□□□ -0.22
TOP3A-208ENST00000542570 ST20-MTHFSA0A0A6YYL1 179 aa13.68□□□□□ -0.22
TOP3A-208ENST00000542570 LMOD2Q6P5Q4 547 aa13.67□□□□□ -0.22
TOP3A-208ENST00000542570 SUPT16HQ9Y5B9 1047 aaKnown RBP13.66□□□□□ -0.22
TOP3A-208ENST00000542570 NEFMP07197 916 aa13.66□□□□□ -0.22
TOP3A-208ENST00000542570 KANK1Q14678 1352 aa13.66□□□□□ -0.22
TOP3A-208ENST00000542570 TRAK1Q9UPV9 953 aa13.66□□□□□ -0.22
TOP3A-208ENST00000542570 SRPK2P78362 688 aaKnown RBP13.64□□□□□ -0.23
TOP3A-208ENST00000542570 ROCK2O75116 1388 aaKnown RBP13.63□□□□□ -0.23
TOP3A-208ENST00000542570 KIF15Q9NS87 1388 aa13.63□□□□□ -0.23
TOP3A-208ENST00000542570 TIMELESSQ9UNS1 1208 aa13.62□□□□□ -0.23
TOP3A-208ENST00000542570 RSPH4AQ5TD94 716 aa13.61□□□□□ -0.23
TOP3A-208ENST00000542570 KIAA0586Q9BVV6 1533 aa13.6□□□□□ -0.23
TOP3A-208ENST00000542570 TMF1P82094 1093 aa13.6□□□□□ -0.23
TOP3A-208ENST00000542570 GRIN2AQ12879 1464 aa13.58□□□□□ -0.23
TOP3A-208ENST00000542570 FYCO1Q9BQS8 1478 aa13.58□□□□□ -0.23
TOP3A-208ENST00000542570 RRBP1Q9P2E9 1410 aaKnown RBP13.57□□□□□ -0.24
TOP3A-208ENST00000542570 NPM2Q86SE8 214 aaKnown RBP13.57□□□□□ -0.24
TOP3A-208ENST00000542570 ANKRD50Q9ULJ7 1429 aa13.57□□□□□ -0.24
TOP3A-208ENST00000542570 A0A0G2JS52 829 aa13.57□□□□□ -0.24
TOP3A-208ENST00000542570 DAXXQ9UER7 740 aaPredicted RBP13.57□□□□□ -0.24
TOP3A-208ENST00000542570 U2SURPO15042 1029 aaKnown RBP13.56□□□□□ -0.24
TOP3A-208ENST00000542570 TMEM132EQ6IEE7 984 aa13.56□□□□□ -0.24
TOP3A-208ENST00000542570 EPRSP07814 1512 aaKnown RBP13.56□□□□□ -0.24
TOP3A-208ENST00000542570 MYT1Q01538 1121 aa13.56□□□□□ -0.24
TOP3A-208ENST00000542570 NBPF8Q3BBV2 869 aa13.56□□□□□ -0.24
TOP3A-208ENST00000542570 NBPF1Q3BBV0 1214 aa13.55□□□□□ -0.24
TOP3A-208ENST00000542570 BIVM-ERCC5R4GMW8 1640 aa13.55□□□□□ -0.24
TOP3A-208ENST00000542570 PCF11O94913 1555 aaKnown RBP13.55□□□□□ -0.24
TOP3A-208ENST00000542570 TIAM1Q13009 1591 aa13.55□□□□□ -0.24
TOP3A-208ENST00000542570 SCAPERQ9BY12 1400 aa13.55□□□□□ -0.24
TOP3A-208ENST00000542570 ARHGEF11O15085 1522 aa13.54□□□□□ -0.24
TOP3A-208ENST00000542570 SYNJ2O15056 1496 aa13.54□□□□□ -0.24
TOP3A-208ENST00000542570 CCDC144AA2RUR9 1427 aa13.53□□□□□ -0.24
TOP3A-208ENST00000542570 IQGAP2Q13576 1575 aa13.53□□□□□ -0.24
TOP3A-208ENST00000542570 TROQ12816 1431 aaPredicted RBP13.53□□□□□ -0.24
TOP3A-208ENST00000542570 CCDC136Q96JN2 1154 aa13.53□□□□□ -0.24
TOP3A-208ENST00000542570 LAS1LQ9Y4W2 734 aaKnown RBP13.53□□□□□ -0.24
TOP3A-208ENST00000542570 CDCA8Q53HL2 280 aa13.51□□□□□ -0.25
TOP3A-208ENST00000542570 ARHGAP5Q13017 1502 aa13.51□□□□□ -0.25
TOP3A-208ENST00000542570 UACAQ9BZF9 1416 aa13.49□□□□□ -0.25
TOP3A-208ENST00000542570 PANK3Q9H999 370 aa13.49□□□□□ -0.25
TOP3A-208ENST00000542570 CFAP70Q5T0N1 1121 aa13.49□□□□□ -0.25
TOP3A-208ENST00000542570 MORC1Q86VD1 984 aa13.48□□□□□ -0.25
TOP3A-208ENST00000542570 EFCAB5A4FU69 1503 aa13.48□□□□□ -0.25
TOP3A-208ENST00000542570 KIF21AQ7Z4S6 1674 aa13.48□□□□□ -0.25
TOP3A-208ENST00000542570 MINK1Q8N4C8 1332 aaPredicted RBP13.47□□□□□ -0.25
TOP3A-208ENST00000542570 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.47□□□□□ -0.25
TOP3A-208ENST00000542570 CCDC146Q8IYE0 955 aa13.46□□□□□ -0.25
TOP3A-208ENST00000542570 PAK3O75914 559 aaPredicted RBP13.46□□□□□ -0.26
TOP3A-208ENST00000542570 NAIPQ13075 1403 aa13.46□□□□□ -0.26
TOP3A-208ENST00000542570 USP47Q96K76 1375 aa13.46□□□□□ -0.26
TOP3A-208ENST00000542570 B4GALNT3Q6L9W6 998 aa13.45□□□□□ -0.26
TOP3A-208ENST00000542570 PTPRKQ15262 1439 aa13.45□□□□□ -0.26
TOP3A-208ENST00000542570 C9orf84Q5VXU9 1444 aa13.45□□□□□ -0.26
TOP3A-208ENST00000542570 FRAT1Q92837 279 aaPredicted RBP13.44□□□□□ -0.26
TOP3A-208ENST00000542570 MAGI1Q96QZ7 1491 aaPredicted RBP13.43□□□□□ -0.26
TOP3A-208ENST00000542570 WASHC2AQ641Q2 1341 aa13.43□□□□□ -0.26
TOP3A-208ENST00000542570 DAPK1P53355 1430 aa13.42□□□□□ -0.26
TOP3A-208ENST00000542570 CFAP53Q96M91 514 aa13.42□□□□□ -0.26
TOP3A-208ENST00000542570 HAP1P54257 671 aaPredicted RBP13.41□□□□□ -0.26
TOP3A-208ENST00000542570 KIF7Q2M1P5 1343 aa13.41□□□□□ -0.26
TOP3A-208ENST00000542570 THOC2Q8NI27 1593 aaKnown RBP13.41□□□□□ -0.26
TOP3A-208ENST00000542570 PRKRIP1Q9H875 184 aaPredicted RBP13.41□□□□□ -0.26
TOP3A-208ENST00000542570 ZBTB47Q9UFB7 747 aaPredicted RBP13.41□□□□□ -0.26
TOP3A-208ENST00000542570 RRP7AQ9Y3A4 280 aaKnown RBP13.4□□□□□ -0.26
TOP3A-208ENST00000542570 HFM1A2PYH4 1435 aa13.4□□□□□ -0.26
TOP3A-208ENST00000542570 ABCC5O15440 1437 aa13.4□□□□□ -0.26
TOP3A-208ENST00000542570 C11orf95C9JLR9 678 aaPredicted RBP13.4□□□□□ -0.26
TOP3A-208ENST00000542570 U2AF1L5P0DN76 240 aaPredicted RBP13.4□□□□□ -0.26
TOP3A-208ENST00000542570 U2AF1Q01081 240 aaKnown RBP eCLIP13.4□□□□□ -0.26
TOP3A-208ENST00000542570 CCDC184Q52MB2 194 aa13.39□□□□□ -0.27
TOP3A-208ENST00000542570 CUL7Q14999 1698 aa13.39□□□□□ -0.27
TOP3A-208ENST00000542570 EHBP1L1Q8N3D4 1523 aa13.38□□□□□ -0.27
TOP3A-208ENST00000542570 CCER2I3L3R5 266 aa13.38□□□□□ -0.27
TOP3A-208ENST00000542570 MIA2Q96PC5 1412 aa13.37□□□□□ -0.27
TOP3A-208ENST00000542570 ATP10BO94823 1461 aa13.37□□□□□ -0.27
TOP3A-208ENST00000542570 KTN1Q86UP2 1357 aaKnown RBP13.36□□□□□ -0.27
TOP3A-208ENST00000542570 HECW1Q76N89 1606 aa13.36□□□□□ -0.27
TOP3A-208ENST00000542570 VGFO15240 615 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms