RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 JPH4Q96JJ6 628 aa18.59■□□□□ 0.57
PTPN1-202ENST00000541713 PLEKHD1A6NEE1 506 aa18.58■□□□□ 0.56
PTPN1-202ENST00000541713 DCAF11Q8TEB1 546 aa18.58■□□□□ 0.56
PTPN1-202ENST00000541713 ERCC6Q03468 1493 aa18.58■□□□□ 0.56
PTPN1-202ENST00000541713 LAMC3Q9Y6N6 1575 aa18.57■□□□□ 0.56
PTPN1-202ENST00000541713 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.57■□□□□ 0.562e-7■■■■□ 20.6
PTPN1-202ENST00000541713 SUPT6HQ7KZ85 1726 aaKnown RBP18.56■□□□□ 0.56
PTPN1-202ENST00000541713 LRRIQ1Q96JM4 1722 aa18.56■□□□□ 0.56
PTPN1-202ENST00000541713 CARD11Q9BXL7 1154 aa18.55■□□□□ 0.56
PTPN1-202ENST00000541713 EHBP1L1Q8N3D4 1523 aa18.54■□□□□ 0.56
PTPN1-202ENST00000541713 PLB1Q6P1J6 1458 aa18.54■□□□□ 0.56
PTPN1-202ENST00000541713 TSPY4P0CV99 314 aa18.54■□□□□ 0.56
PTPN1-202ENST00000541713 TSPY10P0CW01 314 aa18.54■□□□□ 0.56
PTPN1-202ENST00000541713 SENP3Q9H4L4 574 aaPredicted RBP18.53■□□□□ 0.56
PTPN1-202ENST00000541713 MYT1LQ9UL68 1186 aa18.53■□□□□ 0.56
PTPN1-202ENST00000541713 CCDC7Q96M83 1385 aa18.53■□□□□ 0.56
PTPN1-202ENST00000541713 ERICH6Q7L0X2 663 aa18.53■□□□□ 0.56
PTPN1-202ENST00000541713 UGGT2Q9NYU1 1516 aa18.52■□□□□ 0.56
PTPN1-202ENST00000541713 ANP32EQ9BTT0 268 aa18.52■□□□□ 0.55
PTPN1-202ENST00000541713 DENND4BO75064 1496 aaPredicted RBP18.52■□□□□ 0.55
PTPN1-202ENST00000541713 NUP155O75694 1391 aa18.51■□□□□ 0.55
PTPN1-202ENST00000541713 ABCA5Q8WWZ7 1642 aa18.51■□□□□ 0.55
PTPN1-202ENST00000541713 TMC1Q8TDI8 760 aa18.51■□□□□ 0.55
PTPN1-202ENST00000541713 ABCC5O15440 1437 aa18.51■□□□□ 0.55
PTPN1-202ENST00000541713 IQGAP2Q13576 1575 aa18.5■□□□□ 0.55
PTPN1-202ENST00000541713 DAPK1P53355 1430 aa18.49■□□□□ 0.55
PTPN1-202ENST00000541713 ST20-MTHFSA0A0A6YYL1 179 aa18.49■□□□□ 0.55
PTPN1-202ENST00000541713 SAMD9Q5K651 1589 aa18.47■□□□□ 0.55
PTPN1-202ENST00000541713 ANKRD30BQ9BXX2 1392 aa18.47■□□□□ 0.55
PTPN1-202ENST00000541713 CNTLNQ9NXG0 1405 aa18.43■□□□□ 0.54
PTPN1-202ENST00000541713 MRC2Q9UBG0 1479 aa18.43■□□□□ 0.54
PTPN1-202ENST00000541713 CC2D1BQ5T0F9 858 aaKnown RBP18.43■□□□□ 0.54
PTPN1-202ENST00000541713 NUP153P49790 1475 aaKnown RBP18.42■□□□□ 0.54
PTPN1-202ENST00000541713 USP47Q96K76 1375 aa18.42■□□□□ 0.54
PTPN1-202ENST00000541713 TARBP1Q13395 1621 aaKnown RBP18.42■□□□□ 0.54
PTPN1-202ENST00000541713 HECW1Q76N89 1606 aa18.42■□□□□ 0.54
PTPN1-202ENST00000541713 MYT1Q01538 1121 aa18.42■□□□□ 0.54
PTPN1-202ENST00000541713 MSH5O43196 834 aa18.41■□□□□ 0.54
PTPN1-202ENST00000541713 KDM5BQ9UGL1 1544 aa18.4■□□□□ 0.54
PTPN1-202ENST00000541713 NBPF1Q3BBV0 1214 aa18.39■□□□□ 0.53
PTPN1-202ENST00000541713 AKNAQ7Z591 1439 aa18.38■□□□□ 0.53
PTPN1-202ENST00000541713 MIA2Q96PC5 1412 aa18.37■□□□□ 0.53
PTPN1-202ENST00000541713 CCDC136Q96JN2 1154 aa18.37■□□□□ 0.53
PTPN1-202ENST00000541713 PPP4R2Q9NY27 417 aa18.37■□□□□ 0.53
PTPN1-202ENST00000541713 NPM2Q86SE8 214 aaKnown RBP18.36■□□□□ 0.53
PTPN1-202ENST00000541713 DISP1Q96F81 1524 aa18.36■□□□□ 0.53
PTPN1-202ENST00000541713 WDR62O43379 1518 aa18.35■□□□□ 0.53
PTPN1-202ENST00000541713 ANKRD30AQ9BXX3 1397 aa18.34■□□□□ 0.53
PTPN1-202ENST00000541713 KIAA0586Q9BVV6 1533 aa18.34■□□□□ 0.53
PTPN1-202ENST00000541713 NBR1Q14596 966 aa18.33■□□□□ 0.53
PTPN1-202ENST00000541713 ANKRD50Q9ULJ7 1429 aa18.33■□□□□ 0.52
PTPN1-202ENST00000541713 GRIN2AQ12879 1464 aa18.33■□□□□ 0.52
PTPN1-202ENST00000541713 NCOA1Q15788 1441 aa18.32■□□□□ 0.52
PTPN1-202ENST00000541713 ADAMTS12P58397 1594 aa18.32■□□□□ 0.52
PTPN1-202ENST00000541713 ARHGEF11O15085 1522 aa18.32■□□□□ 0.52
PTPN1-202ENST00000541713 CAMSAP2Q08AD1 1489 aa18.31■□□□□ 0.52
PTPN1-202ENST00000541713 TCOF1Q13428 1488 aaKnown RBP18.31■□□□□ 0.52
PTPN1-202ENST00000541713 RPRD2Q5VT52 1461 aaKnown RBP18.31■□□□□ 0.52
PTPN1-202ENST00000541713 TROQ12816 1431 aaPredicted RBP18.31■□□□□ 0.52
PTPN1-202ENST00000541713 PBRM1Q86U86 1689 aa18.3■□□□□ 0.52
PTPN1-202ENST00000541713 IFT140Q96RY7 1462 aa18.29■□□□□ 0.52
PTPN1-202ENST00000541713 SKAP1Q86WV1 359 aa18.29■□□□□ 0.52
PTPN1-202ENST00000541713 GPATCH8Q9UKJ3 1502 aaKnown RBP18.28■□□□□ 0.52
PTPN1-202ENST00000541713 ZBED9Q6R2W3 1325 aa18.28■□□□□ 0.52
PTPN1-202ENST00000541713 PLIN1O60240 522 aa18.28■□□□□ 0.52
PTPN1-202ENST00000541713 CARMIL2Q6F5E8 1435 aa18.28■□□□□ 0.52
PTPN1-202ENST00000541713 ROCK2O75116 1388 aaKnown RBP18.28■□□□□ 0.52
PTPN1-202ENST00000541713 KIF15Q9NS87 1388 aa18.26■□□□□ 0.51
PTPN1-202ENST00000541713 CDCA7LQ96GN5 454 aa18.25■□□□□ 0.51
PTPN1-202ENST00000541713 PZPP20742 1482 aa18.25■□□□□ 0.51
PTPN1-202ENST00000541713 KIF14Q15058 1648 aa18.25■□□□□ 0.51
PTPN1-202ENST00000541713 KIAA1107Q9UPP5 1409 aa18.24■□□□□ 0.51
PTPN1-202ENST00000541713 KIAA0556O60303 1618 aa18.23■□□□□ 0.51
PTPN1-202ENST00000541713 TEX14Q8IWB6 1497 aa18.23■□□□□ 0.51
PTPN1-202ENST00000541713 ROCK1Q13464 1354 aa18.23■□□□□ 0.51
PTPN1-202ENST00000541713 PTPRGP23470 1445 aa18.22■□□□□ 0.51
PTPN1-202ENST00000541713 C9orf84Q5VXU9 1444 aa18.21■□□□□ 0.51
PTPN1-202ENST00000541713 PNISRQ8TF01 805 aaKnown RBP18.21■□□□□ 0.51
PTPN1-202ENST00000541713 NUDCQ9Y266 331 aa18.21■□□□□ 0.51
PTPN1-202ENST00000541713 CHGAP10645 457 aaKnown RBP18.21■□□□□ 0.51
PTPN1-202ENST00000541713 RAPGEF6Q8TEU7 1601 aa18.2■□□□□ 0.5
PTPN1-202ENST00000541713 EXOC6Q8TAG9 804 aa18.19■□□□□ 0.5
PTPN1-202ENST00000541713 PANK3Q9H999 370 aa18.18■□□□□ 0.5
PTPN1-202ENST00000541713 EIF4G3O43432 1585 aaKnown RBP18.18■□□□□ 0.5
PTPN1-202ENST00000541713 DHX29Q7Z478 1369 aaKnown RBP18.16■□□□□ 0.5
PTPN1-202ENST00000541713 SPATA31E1Q6ZUB1 1445 aa18.16■□□□□ 0.5
PTPN1-202ENST00000541713 AFAP1Q8N556 730 aa18.16■□□□□ 0.5
PTPN1-202ENST00000541713 ATP10BO94823 1461 aa18.16■□□□□ 0.5
PTPN1-202ENST00000541713 GCC2Q8IWJ2 1684 aa18.15■□□□□ 0.5
PTPN1-202ENST00000541713 TNNT2P45379 298 aaPredicted RBP18.14■□□□□ 0.5
PTPN1-202ENST00000541713 PAK3O75914 559 aaPredicted RBP18.14■□□□□ 0.49
PTPN1-202ENST00000541713 CEP170Q5SW79 1584 aa18.14■□□□□ 0.49
PTPN1-202ENST00000541713 DNMT1P26358 1616 aaKnown RBP18.13■□□□□ 0.49
PTPN1-202ENST00000541713 SYNJ2O15056 1496 aa18.12■□□□□ 0.49
PTPN1-202ENST00000541713 MAGI1Q96QZ7 1491 aaPredicted RBP18.11■□□□□ 0.49
PTPN1-202ENST00000541713 CCDC146Q8IYE0 955 aa18.1■□□□□ 0.49
PTPN1-202ENST00000541713 NUTM2DQ5VT03 806 aaPredicted RBP18.1■□□□□ 0.49
PTPN1-202ENST00000541713 CCDC144AA2RUR9 1427 aa18.1■□□□□ 0.49
PTPN1-202ENST00000541713 RCAN3Q9UKA8 241 aa18.09■□□□□ 0.49
PTPN1-202ENST00000541713 MYBBP1AQ9BQG0 1328 aaKnown RBP18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms