RNA–Protein interactions for RNA: ENST00000541589.5

LMO3-226, Transcript of LIM domain only 3, humanhuman

TSL 2

Gene LMO3, Length 1,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-226ENST00000541589 ABCA8O94911 1581 aa13.27□□□□□ -0.28
LMO3-226ENST00000541589 PHLDB1Q86UU1 1377 aa13.25□□□□□ -0.29
LMO3-226ENST00000541589 BCORL1Q5H9F3 1711 aa13.23□□□□□ -0.29
LMO3-226ENST00000541589 ZBTB12Q9Y330 459 aaPredicted RBP13.23□□□□□ -0.29
LMO3-226ENST00000541589 ILDR2Q71H61 639 aa13.22□□□□□ -0.29
LMO3-226ENST00000541589 MADDQ8WXG6 1647 aa13.21□□□□□ -0.29
LMO3-226ENST00000541589 SOCS7O14512 581 aa13.21□□□□□ -0.3
LMO3-226ENST00000541589 RAPGEF3O95398 923 aa13.21□□□□□ -0.3
LMO3-226ENST00000541589 CERKQ8TCT0 537 aa13.21□□□□□ -0.3
LMO3-226ENST00000541589 GOLGA3Q08378 1498 aa13.2□□□□□ -0.3
LMO3-226ENST00000541589 ABCA9Q8IUA7 1624 aa13.18□□□□□ -0.3
LMO3-226ENST00000541589 NEO1Q92859 1461 aa13.18□□□□□ -0.3
LMO3-226ENST00000541589 FRMPD1Q5SYB0 1578 aa13.18□□□□□ -0.3
LMO3-226ENST00000541589 HSPA2P54652 639 aa13.17□□□□□ -0.3
LMO3-226ENST00000541589 ATP10BO94823 1461 aa13.17□□□□□ -0.3
LMO3-226ENST00000541589 LOC105371045A0A1W2PR82 267 aa13.16□□□□□ -0.3
LMO3-226ENST00000541589 ARID4BQ4LE39 1312 aaPredicted RBP13.16□□□□□ -0.3
LMO3-226ENST00000541589 FAM9AQ8IZU1 332 aaPredicted RBP13.16□□□□□ -0.3
LMO3-226ENST00000541589 EEA1Q15075 1411 aa13.16□□□□□ -0.3
LMO3-226ENST00000541589 DISP3Q9P2K9 1392 aa13.15□□□□□ -0.31
LMO3-226ENST00000541589 RIMS1Q86UR5 1692 aaKnown RBP13.13□□□□□ -0.31
LMO3-226ENST00000541589 CTTNBP2Q8WZ74 1663 aa13.13□□□□□ -0.31
LMO3-226ENST00000541589 RBM42Q9BTD8 480 aaKnown RBP13.12□□□□□ -0.31
LMO3-226ENST00000541589 ARHGEF40Q8TER5 1519 aa13.12□□□□□ -0.31
LMO3-226ENST00000541589 ARID3CA6NKF2 412 aa13.1□□□□□ -0.31
LMO3-226ENST00000541589 FHOD3Q2V2M9 1422 aa13.09□□□□□ -0.31
LMO3-226ENST00000541589 DENND4BO75064 1496 aaPredicted RBP13.07□□□□□ -0.32
LMO3-226ENST00000541589 POGZQ7Z3K3 1410 aa13.06□□□□□ -0.32
LMO3-226ENST00000541589 PRXQ9BXM0 1461 aa13.06□□□□□ -0.32
LMO3-226ENST00000541589 RICTORQ6R327 1708 aa13.06□□□□□ -0.32
LMO3-226ENST00000541589 FANCAO15360 1455 aa13.05□□□□□ -0.32
LMO3-226ENST00000541589 AKNAQ7Z591 1439 aa13.05□□□□□ -0.32
LMO3-226ENST00000541589 SIGLEC1Q9BZZ2 1709 aa13.05□□□□□ -0.32
LMO3-226ENST00000541589 MKRN4PQ13434 485 aaPredicted RBP13.04□□□□□ -0.32
LMO3-226ENST00000541589 ZMYM4Q5VZL5 1548 aa13.04□□□□□ -0.32
LMO3-226ENST00000541589 TTC37Q6PGP7 1564 aa13.03□□□□□ -0.32
LMO3-226ENST00000541589 P3H3Q8IVL6 736 aa13.03□□□□□ -0.32
LMO3-226ENST00000541589 YEATS2Q9ULM3 1422 aa13.02□□□□□ -0.32
LMO3-226ENST00000541589 SPATA31D1Q6ZQQ2 1576 aa13.02□□□□□ -0.33
LMO3-226ENST00000541589 MAGI2Q86UL8 1455 aa13.01□□□□□ -0.33
LMO3-226ENST00000541589 RAPGEF6Q8TEU7 1601 aa13□□□□□ -0.33
LMO3-226ENST00000541589 ZFYVE16Q7Z3T8 1539 aa13□□□□□ -0.33
LMO3-226ENST00000541589 EFCAB5A4FU69 1503 aa12.99□□□□□ -0.33
LMO3-226ENST00000541589 NUP153P49790 1475 aaKnown RBP12.99□□□□□ -0.33
LMO3-226ENST00000541589 STRCQ7RTU9 1775 aa12.98□□□□□ -0.33
LMO3-226ENST00000541589 SAMD9Q5K651 1589 aa12.98□□□□□ -0.33
LMO3-226ENST00000541589 ARHGEF12Q9NZN5 1544 aa12.98□□□□□ -0.33
LMO3-226ENST00000541589 MLECQ14165 292 aa12.97□□□□□ -0.33
LMO3-226ENST00000541589 FER1L4A9Z1Z3 1794 aa12.97□□□□□ -0.33
LMO3-226ENST00000541589 PREX1Q8TCU6 1659 aa12.97□□□□□ -0.33
LMO3-226ENST00000541589 CFAP74Q9C0B2 1584 aa12.97□□□□□ -0.33
LMO3-226ENST00000541589 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.96□□□□□ -0.34
LMO3-226ENST00000541589 HECW1Q76N89 1606 aa12.95□□□□□ -0.34
LMO3-226ENST00000541589 PLEKHD1A6NEE1 506 aa12.95□□□□□ -0.34
LMO3-226ENST00000541589 CEBPAP49715 358 aaPredicted RBP12.94□□□□□ -0.34
LMO3-226ENST00000541589 PTPRTO14522 1441 aa12.94□□□□□ -0.34
LMO3-226ENST00000541589 ATP10AO60312 1499 aa12.93□□□□□ -0.34
LMO3-226ENST00000541589 LTBP4Q8N2S1 1624 aa12.92□□□□□ -0.34
LMO3-226ENST00000541589 AKT1S1Q96B36 256 aa12.91□□□□□ -0.34
LMO3-226ENST00000541589 IQSEC2Q5JU85 1478 aa12.91□□□□□ -0.34
LMO3-226ENST00000541589 C9orf84Q5VXU9 1444 aa12.91□□□□□ -0.34
LMO3-226ENST00000541589 UHRF1BP1Q6BDS2 1440 aa12.91□□□□□ -0.34
LMO3-226ENST00000541589 SCAPERQ9BY12 1400 aa12.91□□□□□ -0.34
LMO3-226ENST00000541589 PLCH2O75038 1416 aa12.89□□□□□ -0.35
LMO3-226ENST00000541589 SETD1BQ9UPS6 1966 aaKnown RBP12.87□□□□□ -0.35
LMO3-226ENST00000541589 SPDYE2BA6NHP3 402 aa12.86□□□□□ -0.35
LMO3-226ENST00000541589 SPDYE6P0CI01 402 aa12.86□□□□□ -0.35
LMO3-226ENST00000541589 SPDYE2Q495Y8 402 aa12.86□□□□□ -0.35
LMO3-226ENST00000541589 CEP162Q5TB80 1403 aa12.85□□□□□ -0.35
LMO3-226ENST00000541589 UBTFP17480 764 aaKnown RBP12.85□□□□□ -0.35
LMO3-226ENST00000541589 NCOA1Q15788 1441 aa12.83□□□□□ -0.36
LMO3-226ENST00000541589 HAX1O00165 279 aa12.83□□□□□ -0.36
LMO3-226ENST00000541589 EFCAB2Q5VUJ9 269 aa12.81□□□□□ -0.36
LMO3-226ENST00000541589 REM2Q8IYK8 340 aaPredicted RBP12.81□□□□□ -0.36
LMO3-226ENST00000541589 TRAPPC8Q9Y2L5 1435 aa12.81□□□□□ -0.36
LMO3-226ENST00000541589 ZNF518AQ6AHZ1 1483 aa12.81□□□□□ -0.36
LMO3-226ENST00000541589 KDM5CP41229 1560 aa12.81□□□□□ -0.36
LMO3-226ENST00000541589 REREQ9P2R6 1566 aa12.81□□□□□ -0.36
LMO3-226ENST00000541589 PIP4P2Q8N4L2 257 aa12.8□□□□□ -0.36
LMO3-226ENST00000541589 C3P01024 1663 aa12.8□□□□□ -0.36
LMO3-226ENST00000541589 CDK13Q14004 1512 aaKnown RBP12.79□□□□□ -0.36
LMO3-226ENST00000541589 AFAP1Q8N556 730 aa12.78□□□□□ -0.36
LMO3-226ENST00000541589 DIP2CQ9Y2E4 1556 aa12.78□□□□□ -0.36
LMO3-226ENST00000541589 AGLP35573 1532 aa12.77□□□□□ -0.37
LMO3-226ENST00000541589 RANGAP1P46060 587 aaPredicted RBP12.77□□□□□ -0.37
LMO3-226ENST00000541589 UBAP1LF5GYI3 381 aa12.76□□□□□ -0.37
LMO3-226ENST00000541589 SSUH2Q9Y2M2 353 aa12.76□□□□□ -0.37
LMO3-226ENST00000541589 MLH3Q9UHC1 1453 aa12.75□□□□□ -0.37
LMO3-226ENST00000541589 ZNF335Q9H4Z2 1342 aaPredicted RBP12.75□□□□□ -0.37
LMO3-226ENST00000541589 ZNF692Q9BU19 519 aaPredicted RBP12.75□□□□□ -0.37
LMO3-226ENST00000541589 MYO5CQ9NQX4 1742 aa12.75□□□□□ -0.37
LMO3-226ENST00000541589 CAMSAP1Q5T5Y3 1602 aa12.74□□□□□ -0.37
LMO3-226ENST00000541589 ABCA6Q8N139 1617 aa12.74□□□□□ -0.37
LMO3-226ENST00000541589 CLIP1P30622 1438 aa12.73□□□□□ -0.37
LMO3-226ENST00000541589 CNTLNQ9NXG0 1405 aa12.73□□□□□ -0.37
LMO3-226ENST00000541589 PLSCR2Q9NRY7 297 aa12.72□□□□□ -0.37
LMO3-226ENST00000541589 NPATQ14207 1427 aa12.72□□□□□ -0.37
LMO3-226ENST00000541589 NCKAP5LQ9HCH0 1330 aa12.72□□□□□ -0.37
LMO3-226ENST00000541589 ESF1Q9H501 851 aaKnown RBP12.72□□□□□ -0.37
LMO3-226ENST00000541589 ARHGAP5Q13017 1502 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms