RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 DNMT1P26358 1616 aaKnown RBP24.85■■□□□ 1.57
SPIDR-227ENST00000541342 CHIC2Q9UKJ5 165 aa24.85■■□□□ 1.57
SPIDR-227ENST00000541342 ABCC10Q5T3U5 1492 aa24.83■■□□□ 1.57
SPIDR-227ENST00000541342 CDC42BPAQ5VT25 1732 aa24.83■■□□□ 1.57
SPIDR-227ENST00000541342 DAPK1P53355 1430 aa24.83■■□□□ 1.56
SPIDR-227ENST00000541342 RRP7BPQ9NSQ0 103 aa24.81■■□□□ 1.56
SPIDR-227ENST00000541342 AKNAQ7Z591 1439 aa24.81■■□□□ 1.56
SPIDR-227ENST00000541342 CAMSAP2Q08AD1 1489 aa24.81■■□□□ 1.56
SPIDR-227ENST00000541342 ABCC5O15440 1437 aa24.81■■□□□ 1.56
SPIDR-227ENST00000541342 ABCC2Q92887 1545 aa24.8■■□□□ 1.56
SPIDR-227ENST00000541342 KDM6BO15054 1643 aa24.79■■□□□ 1.56
SPIDR-227ENST00000541342 CFDP1Q9UEE9 299 aaPredicted RBP24.79■■□□□ 1.56
SPIDR-227ENST00000541342 ROCK1Q13464 1354 aa24.72■■□□□ 1.55
SPIDR-227ENST00000541342 SIN3AQ96ST3 1273 aa24.71■■□□□ 1.55
SPIDR-227ENST00000541342 ZNF777Q9ULD5 760 aaPredicted RBP24.71■■□□□ 1.55
SPIDR-227ENST00000541342 CROCC2H7BZ55 1655 aa24.71■■□□□ 1.55
SPIDR-227ENST00000541342 UHRF1BP1LA0JNW5 1464 aa24.68■■□□□ 1.54
SPIDR-227ENST00000541342 ZCCHC11Q5TAX3 1644 aaKnown RBP24.68■■□□□ 1.54
SPIDR-227ENST00000541342 CDC42BPBQ9Y5S2 1711 aa24.67■■□□□ 1.54
SPIDR-227ENST00000541342 ADGBQ8N7X0 1667 aa24.66■■□□□ 1.54
SPIDR-227ENST00000541342 PREX2Q70Z35 1606 aa24.65■■□□□ 1.54
SPIDR-227ENST00000541342 TTC37Q6PGP7 1564 aa24.64■■□□□ 1.54
SPIDR-227ENST00000541342 KDM5BQ9UGL1 1544 aa24.63■■□□□ 1.53
SPIDR-227ENST00000541342 DENND4BO75064 1496 aaPredicted RBP24.63■■□□□ 1.53
SPIDR-227ENST00000541342 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.63■■□□□ 1.53
SPIDR-227ENST00000541342 ADGRL2O95490 1459 aa24.59■■□□□ 1.53
SPIDR-227ENST00000541342 NCOA1Q15788 1441 aa24.59■■□□□ 1.53
SPIDR-227ENST00000541342 SAMD9LQ8IVG5 1584 aa24.59■■□□□ 1.53
SPIDR-227ENST00000541342 TRIM52Q96A61 297 aa24.56■■□□□ 1.52
SPIDR-227ENST00000541342 SUPT16HQ9Y5B9 1047 aaKnown RBP24.56■■□□□ 1.52
SPIDR-227ENST00000541342 MYO5CQ9NQX4 1742 aa24.54■■□□□ 1.52
SPIDR-227ENST00000541342 OSCARQ8IYS5 282 aa24.54■■□□□ 1.52
SPIDR-227ENST00000541342 ARHGEF5Q12774 1597 aa24.54■■□□□ 1.52
SPIDR-227ENST00000541342 MBD5Q9P267 1494 aa24.54■■□□□ 1.52
SPIDR-227ENST00000541342 SHANK2Q9UPX8 1470 aa24.54■■□□□ 1.52
SPIDR-227ENST00000541342 TIMELESSQ9UNS1 1208 aa24.52■■□□□ 1.52
SPIDR-227ENST00000541342 HNRNPMP52272 730 aaKnown RBP eCLIP24.51■■□□□ 1.513e-6■■■■□ 25.9
SPIDR-227ENST00000541342 KCNH8Q96L42 1107 aa24.51■■□□□ 1.51
SPIDR-227ENST00000541342 C9orf84Q5VXU9 1444 aa24.51■■□□□ 1.51
SPIDR-227ENST00000541342 MPHOSPH9Q99550 1183 aa24.5■■□□□ 1.51
SPIDR-227ENST00000541342 ARHGAP5Q13017 1502 aa24.5■■□□□ 1.51
SPIDR-227ENST00000541342 ANKRD30AQ9BXX3 1397 aa24.49■■□□□ 1.51
SPIDR-227ENST00000541342 MYT1Q01538 1121 aa24.46■■□□□ 1.51
SPIDR-227ENST00000541342 SYCP2Q9BX26 1530 aa24.46■■□□□ 1.51
SPIDR-227ENST00000541342 CCDC141Q6ZP82 1450 aa24.45■■□□□ 1.5
SPIDR-227ENST00000541342 PPP1R15AO75807 674 aaPredicted RBP24.43■■□□□ 1.5
SPIDR-227ENST00000541342 TONSLQ96HA7 1378 aa24.42■■□□□ 1.5
SPIDR-227ENST00000541342 FOXD1Q16676 465 aa24.42■■□□□ 1.5
SPIDR-227ENST00000541342 PZPP20742 1482 aa24.42■■□□□ 1.5
SPIDR-227ENST00000541342 TSPY4P0CV99 314 aa24.41■■□□□ 1.5
SPIDR-227ENST00000541342 TSPY10P0CW01 314 aa24.41■■□□□ 1.5
SPIDR-227ENST00000541342 PLCH2O75038 1416 aa24.41■■□□□ 1.5
SPIDR-227ENST00000541342 ANKRD50Q9ULJ7 1429 aa24.41■■□□□ 1.5
SPIDR-227ENST00000541342 WDR7Q9Y4E6 1490 aa24.39■■□□□ 1.49
SPIDR-227ENST00000541342 ARHGEF12Q9NZN5 1544 aa24.38■■□□□ 1.49
SPIDR-227ENST00000541342 KIAA1107Q9UPP5 1409 aa24.37■■□□□ 1.49
SPIDR-227ENST00000541342 RSPH4AQ5TD94 716 aa24.36■■□□□ 1.49
SPIDR-227ENST00000541342 KIF15Q9NS87 1388 aa24.36■■□□□ 1.49
SPIDR-227ENST00000541342 MAST1Q9Y2H9 1570 aa24.36■■□□□ 1.49
SPIDR-227ENST00000541342 SLC4A1APQ9BWU0 796 aaKnown RBP24.36■■□□□ 1.49
SPIDR-227ENST00000541342 ANKRD30BQ9BXX2 1392 aa24.35■■□□□ 1.49
SPIDR-227ENST00000541342 PLEKHH2Q8IVE3 1493 aa24.35■■□□□ 1.49
SPIDR-227ENST00000541342 ABCC1P33527 1531 aa24.32■■□□□ 1.48
SPIDR-227ENST00000541342 ASXL2Q76L83 1435 aa24.3■■□□□ 1.48
SPIDR-227ENST00000541342 ARAP3Q8WWN8 1544 aa24.3■■□□□ 1.48
SPIDR-227ENST00000541342 EFCAB2Q5VUJ9 269 aa24.3■■□□□ 1.48
SPIDR-227ENST00000541342 ABCA9Q8IUA7 1624 aa24.3■■□□□ 1.48
SPIDR-227ENST00000541342 DDX10Q13206 875 aaKnown RBP24.28■■□□□ 1.48
SPIDR-227ENST00000541342 KDM5DQ9BY66 1539 aa24.27■■□□□ 1.48
SPIDR-227ENST00000541342 PLXNC1O60486 1568 aa24.27■■□□□ 1.48
SPIDR-227ENST00000541342 RPRD2Q5VT52 1461 aaKnown RBP24.27■■□□□ 1.48
SPIDR-227ENST00000541342 NUP155O75694 1391 aa24.24■■□□□ 1.47
SPIDR-227ENST00000541342 TRAPPC8Q9Y2L5 1435 aa24.24■■□□□ 1.47
SPIDR-227ENST00000541342 PKD2Q13563 968 aa24.22■■□□□ 1.47
SPIDR-227ENST00000541342 TSHZ2Q9NRE2 1034 aa24.22■■□□□ 1.47
SPIDR-227ENST00000541342 TEX14Q8IWB6 1497 aa24.2■■□□□ 1.46
SPIDR-227ENST00000541342 L3MBTL2Q969R5 705 aa24.2■■□□□ 1.46
SPIDR-227ENST00000541342 FANCAO15360 1455 aa24.18■■□□□ 1.46
SPIDR-227ENST00000541342 HIRIP3Q9BW71 556 aaPredicted RBP24.18■■□□□ 1.46
SPIDR-227ENST00000541342 UNC13BO14795 1591 aa24.17■■□□□ 1.46
SPIDR-227ENST00000541342 NPM1P06748 294 aaKnown RBP eCLIP24.16■■□□□ 1.46
SPIDR-227ENST00000541342 DUOX2Q9NRD8 1548 aa24.16■■□□□ 1.46
SPIDR-227ENST00000541342 FAM135AQ9P2D6 1515 aa24.15■■□□□ 1.46
SPIDR-227ENST00000541342 AFAP1Q8N556 730 aa24.13■■□□□ 1.45
SPIDR-227ENST00000541342 ZFYVE16Q7Z3T8 1539 aa24.12■■□□□ 1.45
SPIDR-227ENST00000541342 ERBINQ96RT1 1412 aa24.1■■□□□ 1.45
SPIDR-227ENST00000541342 ADGRL1O94910 1474 aa24.09■■□□□ 1.45
SPIDR-227ENST00000541342 RTEL1-TNFRSF6BF6WH68 1400 aa24.09■■□□□ 1.45
SPIDR-227ENST00000541342 SPAG9O60271 1321 aaKnown RBP24.08■■□□□ 1.45
SPIDR-227ENST00000541342 IQGAP3Q86VI3 1631 aa24.08■■□□□ 1.44
SPIDR-227ENST00000541342 INO80Q9ULG1 1556 aaPredicted RBP24.07■■□□□ 1.44
SPIDR-227ENST00000541342 MAGI2Q86UL8 1455 aa24.06■■□□□ 1.44
SPIDR-227ENST00000541342 SCAPERQ9BY12 1400 aa24.05■■□□□ 1.44
SPIDR-227ENST00000541342 NBPF8Q3BBV2 869 aa24.05■■□□□ 1.44
SPIDR-227ENST00000541342 CCER2I3L3R5 266 aa24.04■■□□□ 1.44
SPIDR-227ENST00000541342 RIMBP3CA6NJZ7 1639 aa24.04■■□□□ 1.44
SPIDR-227ENST00000541342 RIMBP3BA6NNM3 1639 aa24.04■■□□□ 1.44
SPIDR-227ENST00000541342 RIMBP3Q9UFD9 1639 aa24.04■■□□□ 1.44
SPIDR-227ENST00000541342 ATP7AQ04656 1500 aa24.04■■□□□ 1.44
SPIDR-227ENST00000541342 BCANQ96GW7 911 aa24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms