RNA–Protein interactions for RNA: ENST00000540918.2

TTC39C-203, Transcript of tetratricopeptide repeat domain 39C, humanhuman

TSL 2 BASIC

Gene TTC39C, Length 4,117 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39C-203ENST00000540918 PRXQ9BXM0 1461 aa12.81□□□□□ -0.36
TTC39C-203ENST00000540918 HMGXB3Q12766 1538 aa12.79□□□□□ -0.36
TTC39C-203ENST00000540918 CCDC18Q5T9S5 1454 aa12.79□□□□□ -0.36
TTC39C-203ENST00000540918 WASHC2CQ9Y4E1 1318 aa12.78□□□□□ -0.36
TTC39C-203ENST00000540918 SRPK2P78362 688 aaKnown RBP12.77□□□□□ -0.36
TTC39C-203ENST00000540918 CCDC136Q96JN2 1154 aa12.77□□□□□ -0.36
TTC39C-203ENST00000540918 TOP2BQ02880 1626 aa12.77□□□□□ -0.37
TTC39C-203ENST00000540918 GRIN2BQ13224 1484 aa12.76□□□□□ -0.37
TTC39C-203ENST00000540918 ST20-MTHFSA0A0A6YYL1 179 aa12.75□□□□□ -0.37
TTC39C-203ENST00000540918 FAM69CQ0P6D2 419 aa12.74□□□□□ -0.37
TTC39C-203ENST00000540918 PRG4Q92954 1404 aaPredicted RBP12.74□□□□□ -0.37
TTC39C-203ENST00000540918 KANK1Q14678 1352 aa12.74□□□□□ -0.37
TTC39C-203ENST00000540918 TRAK1Q9UPV9 953 aa12.74□□□□□ -0.37
TTC39C-203ENST00000540918 U2SURPO15042 1029 aaKnown RBP12.74□□□□□ -0.37
TTC39C-203ENST00000540918 LRRC9Q6ZRR7 1453 aa12.74□□□□□ -0.37
TTC39C-203ENST00000540918 MRC2Q9UBG0 1479 aa12.74□□□□□ -0.37
TTC39C-203ENST00000540918 LAS1LQ9Y4W2 734 aaKnown RBP12.73□□□□□ -0.37
TTC39C-203ENST00000540918 ZNF608Q9ULD9 1512 aaPredicted RBP12.73□□□□□ -0.37
TTC39C-203ENST00000540918 ZBTB47Q9UFB7 747 aaPredicted RBP12.73□□□□□ -0.37
TTC39C-203ENST00000540918 SNAPC4Q5SXM2 1469 aa12.73□□□□□ -0.37
TTC39C-203ENST00000540918 ROCK2O75116 1388 aaKnown RBP12.73□□□□□ -0.37
TTC39C-203ENST00000540918 TMF1P82094 1093 aa12.73□□□□□ -0.37
TTC39C-203ENST00000540918 FGD6Q6ZV73 1430 aa12.72□□□□□ -0.37
TTC39C-203ENST00000540918 PRDM2Q13029 1718 aa12.72□□□□□ -0.37
TTC39C-203ENST00000540918 TIMELESSQ9UNS1 1208 aa12.69□□□□□ -0.38
TTC39C-203ENST00000540918 NCOA2Q15596 1464 aa12.69□□□□□ -0.38
TTC39C-203ENST00000540918 URB2Q14146 1524 aaKnown RBP12.69□□□□□ -0.38
TTC39C-203ENST00000540918 MYOM3Q5VTT5 1437 aa12.68□□□□□ -0.38
TTC39C-203ENST00000540918 RAPGEF3O95398 923 aa12.67□□□□□ -0.38
TTC39C-203ENST00000540918 CDCA8Q53HL2 280 aa12.67□□□□□ -0.38
TTC39C-203ENST00000540918 CASKIN1Q8WXD9 1431 aa12.66□□□□□ -0.38
TTC39C-203ENST00000540918 B4GALNT3Q6L9W6 998 aa12.66□□□□□ -0.38
TTC39C-203ENST00000540918 FRAT1Q92837 279 aaPredicted RBP12.65□□□□□ -0.38
TTC39C-203ENST00000540918 KIF15Q9NS87 1388 aa12.64□□□□□ -0.39
TTC39C-203ENST00000540918 CDK13Q14004 1512 aaKnown RBP12.64□□□□□ -0.39
TTC39C-203ENST00000540918 DNMBPQ6XZF7 1577 aa12.64□□□□□ -0.39
TTC39C-203ENST00000540918 RSPH4AQ5TD94 716 aa12.64□□□□□ -0.39
TTC39C-203ENST00000540918 MORC1Q86VD1 984 aa12.64□□□□□ -0.39
TTC39C-203ENST00000540918 MYT1Q01538 1121 aa12.63□□□□□ -0.39
TTC39C-203ENST00000540918 IFT140Q96RY7 1462 aa12.63□□□□□ -0.39
TTC39C-203ENST00000540918 HAP1P54257 671 aaPredicted RBP12.63□□□□□ -0.39
TTC39C-203ENST00000540918 ERICH3Q5RHP9 1530 aa12.62□□□□□ -0.39
TTC39C-203ENST00000540918 TMEM132EQ6IEE7 984 aa12.62□□□□□ -0.39
TTC39C-203ENST00000540918 PLB1Q6P1J6 1458 aa12.62□□□□□ -0.39
TTC39C-203ENST00000540918 PAK3O75914 559 aaPredicted RBP12.61□□□□□ -0.39
TTC39C-203ENST00000540918 CCDC146Q8IYE0 955 aa12.61□□□□□ -0.39
TTC39C-203ENST00000540918 CFAP53Q96M91 514 aa12.61□□□□□ -0.39
TTC39C-203ENST00000540918 RTL5Q5HYW3 569 aaPredicted RBP12.61□□□□□ -0.39
TTC39C-203ENST00000540918 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.6□□□□□ -0.39
TTC39C-203ENST00000540918 CCDC144AA2RUR9 1427 aa12.6□□□□□ -0.39
TTC39C-203ENST00000540918 ABCA10Q8WWZ4 1543 aa12.6□□□□□ -0.39
TTC39C-203ENST00000540918 ARXQ96QS3 562 aa12.6□□□□□ -0.39
TTC39C-203ENST00000540918 PANK3Q9H999 370 aa12.59□□□□□ -0.39
TTC39C-203ENST00000540918 NBPF1Q3BBV0 1214 aa12.59□□□□□ -0.39
TTC39C-203ENST00000540918 PEG3Q9GZU2 1588 aa12.58□□□□□ -0.4
TTC39C-203ENST00000540918 ANKRD50Q9ULJ7 1429 aa12.58□□□□□ -0.4
TTC39C-203ENST00000540918 MINK1Q8N4C8 1332 aaPredicted RBP12.58□□□□□ -0.4
TTC39C-203ENST00000540918 NBPF8Q3BBV2 869 aa12.57□□□□□ -0.4
TTC39C-203ENST00000540918 U2AF1L5P0DN76 240 aaPredicted RBP12.56□□□□□ -0.4
TTC39C-203ENST00000540918 U2AF1Q01081 240 aaKnown RBP eCLIP12.56□□□□□ -0.4
TTC39C-203ENST00000540918 ANP32AP39687 249 aaKnown RBP12.56□□□□□ -0.4
TTC39C-203ENST00000540918 MAPK8IP3Q9UPT6 1336 aa12.56□□□□□ -0.4
TTC39C-203ENST00000540918 RRP7AQ9Y3A4 280 aaKnown RBP12.56□□□□□ -0.4
TTC39C-203ENST00000540918 RGS3P49796 1198 aa12.55□□□□□ -0.4
TTC39C-203ENST00000540918 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.55□□□□□ -0.4
TTC39C-203ENST00000540918 SCAPERQ9BY12 1400 aa12.54□□□□□ -0.4
TTC39C-203ENST00000540918 CFAP70Q5T0N1 1121 aa12.54□□□□□ -0.4
TTC39C-203ENST00000540918 USP47Q96K76 1375 aa12.54□□□□□ -0.4
TTC39C-203ENST00000540918 RRBP1Q9P2E9 1410 aaKnown RBP12.53□□□□□ -0.4
TTC39C-203ENST00000540918 FYCO1Q9BQS8 1478 aa12.53□□□□□ -0.4
TTC39C-203ENST00000540918 LAMC3Q9Y6N6 1575 aa12.53□□□□□ -0.4
TTC39C-203ENST00000540918 NUDCQ9Y266 331 aa12.52□□□□□ -0.4
TTC39C-203ENST00000540918 CCER2I3L3R5 266 aa12.52□□□□□ -0.4
TTC39C-203ENST00000540918 NBR1Q14596 966 aa12.52□□□□□ -0.4
TTC39C-203ENST00000540918 KTN1Q86UP2 1357 aaKnown RBP12.52□□□□□ -0.41
TTC39C-203ENST00000540918 ARHGAP5Q13017 1502 aa12.52□□□□□ -0.41
TTC39C-203ENST00000540918 LTV1Q96GA3 475 aaPredicted RBP12.52□□□□□ -0.41
TTC39C-203ENST00000540918 PRKRIP1Q9H875 184 aaPredicted RBP12.52□□□□□ -0.41
TTC39C-203ENST00000540918 UACAQ9BZF9 1416 aa12.51□□□□□ -0.41
TTC39C-203ENST00000540918 SYNJ2O15056 1496 aa12.51□□□□□ -0.41
TTC39C-203ENST00000540918 KIAA0586Q9BVV6 1533 aa12.51□□□□□ -0.41
TTC39C-203ENST00000540918 ARHGEF11O15085 1522 aa12.5□□□□□ -0.41
TTC39C-203ENST00000540918 EPRSP07814 1512 aaKnown RBP12.5□□□□□ -0.41
TTC39C-203ENST00000540918 WASHC2AQ641Q2 1341 aa12.49□□□□□ -0.41
TTC39C-203ENST00000540918 TIAM1Q13009 1591 aa12.49□□□□□ -0.41
TTC39C-203ENST00000540918 KIF7Q2M1P5 1343 aa12.49□□□□□ -0.41
TTC39C-203ENST00000540918 TROQ12816 1431 aaPredicted RBP12.49□□□□□ -0.41
TTC39C-203ENST00000540918 HDGFP51858 240 aaKnown RBP12.49□□□□□ -0.41
TTC39C-203ENST00000540918 FTSJ3Q8IY81 847 aaKnown RBP12.48□□□□□ -0.41
TTC39C-203ENST00000540918 PCF11O94913 1555 aaKnown RBP12.48□□□□□ -0.41
TTC39C-203ENST00000540918 HDGFL2Q7Z4V5 671 aaPredicted RBP12.47□□□□□ -0.41
TTC39C-203ENST00000540918 GRIN2AQ12879 1464 aa12.47□□□□□ -0.41
TTC39C-203ENST00000540918 CLUAP1Q96AJ1 413 aa12.47□□□□□ -0.41
TTC39C-203ENST00000540918 NGDNQ8NEJ9 315 aaKnown RBP12.47□□□□□ -0.41
TTC39C-203ENST00000540918 ELL2O00472 640 aaPredicted RBP12.46□□□□□ -0.42
TTC39C-203ENST00000540918 PLIN1O60240 522 aa12.46□□□□□ -0.42
TTC39C-203ENST00000540918 BCL2L13Q9BXK5 485 aa12.46□□□□□ -0.42
TTC39C-203ENST00000540918 CCDC184Q52MB2 194 aa12.45□□□□□ -0.42
TTC39C-203ENST00000540918 CABP2Q9NPB3 220 aa12.45□□□□□ -0.42
TTC39C-203ENST00000540918 C9orf84Q5VXU9 1444 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms