RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CAMSAP2Q08AD1 1489 aa19.96■□□□□ 0.79
RTN3-210ENST00000540798 CDC42BPAQ5VT25 1732 aa19.96■□□□□ 0.79
RTN3-210ENST00000540798 ADGBQ8N7X0 1667 aa19.95■□□□□ 0.78
RTN3-210ENST00000540798 ABCC10Q5T3U5 1492 aa19.95■□□□□ 0.78
RTN3-210ENST00000540798 MIER1Q8N108 512 aa19.93■□□□□ 0.78
RTN3-210ENST00000540798 RRP7BPQ9NSQ0 103 aa19.93■□□□□ 0.78
RTN3-210ENST00000540798 NEUROD1Q13562 356 aa19.91■□□□□ 0.78
RTN3-210ENST00000540798 ACIN1Q9UKV3 1341 aaKnown RBP19.91■□□□□ 0.78
RTN3-210ENST00000540798 CHIC2Q9UKJ5 165 aa19.91■□□□□ 0.78
RTN3-210ENST00000540798 KDM5BQ9UGL1 1544 aa19.91■□□□□ 0.78
RTN3-210ENST00000540798 ZNF644Q9H582 1327 aaPredicted RBP19.9■□□□□ 0.78
RTN3-210ENST00000540798 PPP1R15AO75807 674 aaPredicted RBP19.9■□□□□ 0.78
RTN3-210ENST00000540798 PTPRGP23470 1445 aa19.9■□□□□ 0.78
RTN3-210ENST00000540798 ADGRL2O95490 1459 aa19.89■□□□□ 0.78
RTN3-210ENST00000540798 CLASP1Q7Z460 1538 aa19.87■□□□□ 0.77
RTN3-210ENST00000540798 CFDP1Q9UEE9 299 aaPredicted RBP19.85■□□□□ 0.77
RTN3-210ENST00000540798 PLEKHD1A6NEE1 506 aa19.84■□□□□ 0.77
RTN3-210ENST00000540798 TONSLQ96HA7 1378 aa19.83■□□□□ 0.76
RTN3-210ENST00000540798 SHANK2Q9UPX8 1470 aa19.83■□□□□ 0.76
RTN3-210ENST00000540798 ERCC6L2Q5T890 1561 aa19.82■□□□□ 0.76
RTN3-210ENST00000540798 NCOA1Q15788 1441 aa19.82■□□□□ 0.76
RTN3-210ENST00000540798 PREX2Q70Z35 1606 aa19.81■□□□□ 0.76
RTN3-210ENST00000540798 CENPBP07199 599 aaPredicted RBP19.8■□□□□ 0.76
RTN3-210ENST00000540798 ABCC2Q92887 1545 aa19.79■□□□□ 0.76
RTN3-210ENST00000540798 ARHGEF5Q12774 1597 aa19.79■□□□□ 0.76
RTN3-210ENST00000540798 CDC42BPBQ9Y5S2 1711 aa19.79■□□□□ 0.76
RTN3-210ENST00000540798 MPHOSPH9Q99550 1183 aa19.79■□□□□ 0.76
RTN3-210ENST00000540798 TRIM52Q96A61 297 aa19.75■□□□□ 0.75
RTN3-210ENST00000540798 PZPP20742 1482 aa19.75■□□□□ 0.75
RTN3-210ENST00000540798 SAMD9LQ8IVG5 1584 aa19.74■□□□□ 0.75
RTN3-210ENST00000540798 ANKRD30BQ9BXX2 1392 aa19.74■□□□□ 0.75
RTN3-210ENST00000540798 UHRF1BP1LA0JNW5 1464 aa19.72■□□□□ 0.75
RTN3-210ENST00000540798 ANKRD30AQ9BXX3 1397 aa19.72■□□□□ 0.75
RTN3-210ENST00000540798 MBD5Q9P267 1494 aa19.72■□□□□ 0.75
RTN3-210ENST00000540798 TTC37Q6PGP7 1564 aa19.71■□□□□ 0.75
RTN3-210ENST00000540798 RPRD2Q5VT52 1461 aaKnown RBP19.71■□□□□ 0.75
RTN3-210ENST00000540798 C9orf84Q5VXU9 1444 aa19.7■□□□□ 0.74
RTN3-210ENST00000540798 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.7■□□□□ 0.741e-77■■□□□ 12.1
RTN3-210ENST00000540798 ZNF777Q9ULD5 760 aaPredicted RBP19.69■□□□□ 0.74
RTN3-210ENST00000540798 KDM5DQ9BY66 1539 aa19.68■□□□□ 0.74
RTN3-210ENST00000540798 ZCCHC11Q5TAX3 1644 aaKnown RBP19.68■□□□□ 0.74
RTN3-210ENST00000540798 MYO5CQ9NQX4 1742 aa19.67■□□□□ 0.74
RTN3-210ENST00000540798 TEX14Q8IWB6 1497 aa19.67■□□□□ 0.74
RTN3-210ENST00000540798 MAST1Q9Y2H9 1570 aa19.66■□□□□ 0.74
RTN3-210ENST00000540798 ANKRD50Q9ULJ7 1429 aa19.66■□□□□ 0.74
RTN3-210ENST00000540798 CCDC141Q6ZP82 1450 aa19.65■□□□□ 0.74
RTN3-210ENST00000540798 KIAA1107Q9UPP5 1409 aa19.61■□□□□ 0.73
RTN3-210ENST00000540798 FOXD1Q16676 465 aa19.61■□□□□ 0.73
RTN3-210ENST00000540798 SLC4A1APQ9BWU0 796 aaKnown RBP19.61■□□□□ 0.73
RTN3-210ENST00000540798 YTHDC1Q96MU7 727 aaKnown RBP19.6■□□□□ 0.73
RTN3-210ENST00000540798 SYCP2Q9BX26 1530 aa19.59■□□□□ 0.73
RTN3-210ENST00000540798 RSPH4AQ5TD94 716 aa19.59■□□□□ 0.73
RTN3-210ENST00000540798 ARHGAP5Q13017 1502 aa19.59■□□□□ 0.73
RTN3-210ENST00000540798 L3MBTL2Q969R5 705 aa19.58■□□□□ 0.72
RTN3-210ENST00000540798 PLEKHH2Q8IVE3 1493 aa19.57■□□□□ 0.72
RTN3-210ENST00000540798 PLXNC1O60486 1568 aa19.57■□□□□ 0.72
RTN3-210ENST00000540798 HNRNPMP52272 730 aaKnown RBP eCLIP19.56■□□□□ 0.72
RTN3-210ENST00000540798 DNAJC5Q9H3Z4 198 aa19.56■□□□□ 0.72
RTN3-210ENST00000540798 KIF15Q9NS87 1388 aa19.56■□□□□ 0.72
RTN3-210ENST00000540798 TSPY4P0CV99 314 aa19.56■□□□□ 0.72
RTN3-210ENST00000540798 TSPY10P0CW01 314 aa19.56■□□□□ 0.72
RTN3-210ENST00000540798 DDX10Q13206 875 aaKnown RBP19.55■□□□□ 0.72
RTN3-210ENST00000540798 UNC13BO14795 1591 aa19.53■□□□□ 0.72
RTN3-210ENST00000540798 HIRIP3Q9BW71 556 aaPredicted RBP19.53■□□□□ 0.72
RTN3-210ENST00000540798 PLCH2O75038 1416 aa19.53■□□□□ 0.72
RTN3-210ENST00000540798 ARAP3Q8WWN8 1544 aa19.52■□□□□ 0.72
RTN3-210ENST00000540798 GTF3C3Q9Y5Q9 886 aa19.51■□□□□ 0.71
RTN3-210ENST00000540798 ARHGEF12Q9NZN5 1544 aa19.5■□□□□ 0.71
RTN3-210ENST00000540798 POLR1AO95602 1720 aaPredicted RBP19.5■□□□□ 0.71
RTN3-210ENST00000540798 ABCC1P33527 1531 aa19.49■□□□□ 0.71
RTN3-210ENST00000540798 NUP155O75694 1391 aa19.49■□□□□ 0.71
RTN3-210ENST00000540798 PKD2Q13563 968 aa19.48■□□□□ 0.71
RTN3-210ENST00000540798 HSPA5P11021 654 aaKnown RBP19.47■□□□□ 0.71
RTN3-210ENST00000540798 NBPF8Q3BBV2 869 aa19.47■□□□□ 0.71
RTN3-210ENST00000540798 FAM135AQ9P2D6 1515 aa19.47■□□□□ 0.71
RTN3-210ENST00000540798 SPATA31E1Q6ZUB1 1445 aa19.46■□□□□ 0.71
RTN3-210ENST00000540798 IQGAP3Q86VI3 1631 aa19.44■□□□□ 0.7
RTN3-210ENST00000540798 EIF4G2P78344 907 aaKnown RBP eCLIP19.44■□□□□ 0.7
RTN3-210ENST00000540798 DUOX2Q9NRD8 1548 aa19.44■□□□□ 0.7
RTN3-210ENST00000540798 MAGI2Q86UL8 1455 aa19.44■□□□□ 0.7
RTN3-210ENST00000540798 UHRF1BP1Q6BDS2 1440 aa19.43■□□□□ 0.7
RTN3-210ENST00000540798 WDR7Q9Y4E6 1490 aa19.42■□□□□ 0.7
RTN3-210ENST00000540798 ABCA9Q8IUA7 1624 aa19.42■□□□□ 0.7
RTN3-210ENST00000540798 WASHC2AQ641Q2 1341 aa19.41■□□□□ 0.7
RTN3-210ENST00000540798 CCER2I3L3R5 266 aa19.41■□□□□ 0.7
RTN3-210ENST00000540798 ERBINQ96RT1 1412 aa19.4■□□□□ 0.7
RTN3-210ENST00000540798 KCNH8Q96L42 1107 aa19.4■□□□□ 0.7
RTN3-210ENST00000540798 EFCAB2Q5VUJ9 269 aa19.38■□□□□ 0.69
RTN3-210ENST00000540798 ANP32CO43423 234 aa19.36■□□□□ 0.69
RTN3-210ENST00000540798 TRAPPC8Q9Y2L5 1435 aa19.36■□□□□ 0.69
RTN3-210ENST00000540798 KDM5CP41229 1560 aa19.35■□□□□ 0.69
RTN3-210ENST00000540798 RTEL1-TNFRSF6BF6WH68 1400 aa19.35■□□□□ 0.69
RTN3-210ENST00000540798 RALGAPBQ86X10 1494 aa19.35■□□□□ 0.69
RTN3-210ENST00000540798 ZFYVE16Q7Z3T8 1539 aa19.35■□□□□ 0.69
RTN3-210ENST00000540798 CCDC7Q96M83 1385 aa19.34■□□□□ 0.69
RTN3-210ENST00000540798 CNTLNQ9NXG0 1405 aa19.34■□□□□ 0.69
RTN3-210ENST00000540798 ATP10AO60312 1499 aa19.32■□□□□ 0.68
RTN3-210ENST00000540798 INO80Q9ULG1 1556 aaPredicted RBP19.32■□□□□ 0.68
RTN3-210ENST00000540798 PLA2R1Q13018 1463 aa19.32■□□□□ 0.68
RTN3-210ENST00000540798 C11orf95C9JLR9 678 aaPredicted RBP19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms