RNA–Protein interactions for RNA: ENST00000540608.5

NPC1-202, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

TSL 2

Gene NPC1, Length 2,790 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-202ENST00000540608 HNRNPUQ00839 825 aaKnown RBP eCLIP17.08■□□□□ 0.33
NPC1-202ENST00000540608 GRIN2AQ12879 1464 aa17.07■□□□□ 0.32
NPC1-202ENST00000540608 NUP153P49790 1475 aaKnown RBP17.06■□□□□ 0.32
NPC1-202ENST00000540608 L3MBTL2Q969R5 705 aa17.05■□□□□ 0.32
NPC1-202ENST00000540608 CNTLNQ9NXG0 1405 aa17.04■□□□□ 0.32
NPC1-202ENST00000540608 RAPGEF6Q8TEU7 1601 aa17.03■□□□□ 0.32
NPC1-202ENST00000540608 DAPK1P53355 1430 aa17.02■□□□□ 0.32
NPC1-202ENST00000540608 ZNF644Q9H582 1327 aaPredicted RBP17.02■□□□□ 0.31
NPC1-202ENST00000540608 ROCK1Q13464 1354 aa17.02■□□□□ 0.31
NPC1-202ENST00000540608 NCOA1Q15788 1441 aa17.01■□□□□ 0.31
NPC1-202ENST00000540608 FOXD1Q16676 465 aa17■□□□□ 0.31
NPC1-202ENST00000540608 ABCC5O15440 1437 aa17■□□□□ 0.31
NPC1-202ENST00000540608 ANKRD30BQ9BXX2 1392 aa16.99■□□□□ 0.31
NPC1-202ENST00000540608 CCDC7Q96M83 1385 aa16.99■□□□□ 0.31
NPC1-202ENST00000540608 MAGI1Q96QZ7 1491 aaPredicted RBP16.99■□□□□ 0.31
NPC1-202ENST00000540608 DNMT1P26358 1616 aaKnown RBP16.99■□□□□ 0.31
NPC1-202ENST00000540608 ERICH6BQ5W0A0 696 aa16.99■□□□□ 0.31
NPC1-202ENST00000540608 RPRD2Q5VT52 1461 aaKnown RBP16.98■□□□□ 0.31
NPC1-202ENST00000540608 C11orf95C9JLR9 678 aaPredicted RBP16.98■□□□□ 0.31
NPC1-202ENST00000540608 CEP170Q5SW79 1584 aa16.97■□□□□ 0.31
NPC1-202ENST00000540608 PRKRIP1Q9H875 184 aaPredicted RBP16.96■□□□□ 0.31
NPC1-202ENST00000540608 PRG4Q92954 1404 aaPredicted RBP16.96■□□□□ 0.31
NPC1-202ENST00000540608 CCDC184Q52MB2 194 aa16.95■□□□□ 0.3
NPC1-202ENST00000540608 CDK11AQ9UQ88 783 aaPredicted RBP16.95■□□□□ 0.3
NPC1-202ENST00000540608 CHMP7Q8WUX9 453 aaPredicted RBP16.95■□□□□ 0.3
NPC1-202ENST00000540608 PLB1Q6P1J6 1458 aa16.95■□□□□ 0.3
NPC1-202ENST00000540608 NBPF8Q3BBV2 869 aa16.94■□□□□ 0.3
NPC1-202ENST00000540608 TEX14Q8IWB6 1497 aa16.94■□□□□ 0.3
NPC1-202ENST00000540608 SYNJ2O15056 1496 aa16.93■□□□□ 0.3
NPC1-202ENST00000540608 TROQ12816 1431 aaPredicted RBP16.93■□□□□ 0.3
NPC1-202ENST00000540608 SPATA31E1Q6ZUB1 1445 aa16.92■□□□□ 0.3
NPC1-202ENST00000540608 IRX6P78412 446 aaPredicted RBP16.92■□□□□ 0.3
NPC1-202ENST00000540608 FBLN2P98095 1184 aa16.92■□□□□ 0.3
NPC1-202ENST00000540608 SLC4A1APQ9BWU0 796 aaKnown RBP16.9■□□□□ 0.3
NPC1-202ENST00000540608 CAMSAP2Q08AD1 1489 aa16.9■□□□□ 0.3
NPC1-202ENST00000540608 MRS2Q9HD23 443 aa16.89■□□□□ 0.3
NPC1-202ENST00000540608 PPP4R2Q9NY27 417 aa16.89■□□□□ 0.29
NPC1-202ENST00000540608 KIF14Q15058 1648 aa16.89■□□□□ 0.29
NPC1-202ENST00000540608 POLR1AO95602 1720 aaPredicted RBP16.89■□□□□ 0.29
NPC1-202ENST00000540608 CFDP1Q9UEE9 299 aaPredicted RBP16.89■□□□□ 0.29
NPC1-202ENST00000540608 KIF7Q2M1P5 1343 aa16.88■□□□□ 0.29
NPC1-202ENST00000540608 ZBED9Q6R2W3 1325 aa16.88■□□□□ 0.29
NPC1-202ENST00000540608 FAM9BQ8IZU0 186 aa16.88■□□□□ 0.29
NPC1-202ENST00000540608 GPATCH8Q9UKJ3 1502 aaKnown RBP16.88■□□□□ 0.29
NPC1-202ENST00000540608 FANCIQ9NVI1 1328 aa16.87■□□□□ 0.29
NPC1-202ENST00000540608 JPH4Q96JJ6 628 aa16.87■□□□□ 0.29
NPC1-202ENST00000540608 ITSN2Q9NZM3 1697 aa16.86■□□□□ 0.29
NPC1-202ENST00000540608 NUP160Q12769 1436 aa16.86■□□□□ 0.29
NPC1-202ENST00000540608 ADCY10Q96PN6 1610 aa16.85■□□□□ 0.29
NPC1-202ENST00000540608 CARMIL2Q6F5E8 1435 aa16.85■□□□□ 0.29
NPC1-202ENST00000540608 ZNF777Q9ULD5 760 aaPredicted RBP16.85■□□□□ 0.29
NPC1-202ENST00000540608 MSH5O43196 834 aa16.84■□□□□ 0.29
NPC1-202ENST00000540608 PZPP20742 1482 aa16.84■□□□□ 0.29
NPC1-202ENST00000540608 ADGBQ8N7X0 1667 aa16.83■□□□□ 0.28
NPC1-202ENST00000540608 CROCC2H7BZ55 1655 aa16.81■□□□□ 0.28
NPC1-202ENST00000540608 ADGRL2O95490 1459 aa16.8■□□□□ 0.28
NPC1-202ENST00000540608 MBD5Q9P267 1494 aa16.8■□□□□ 0.28
NPC1-202ENST00000540608 KIAA1107Q9UPP5 1409 aa16.79■□□□□ 0.28
NPC1-202ENST00000540608 ABCA8O94911 1581 aa16.78■□□□□ 0.28
NPC1-202ENST00000540608 DHX29Q7Z478 1369 aaKnown RBP16.77■□□□□ 0.28
NPC1-202ENST00000540608 ATP10BO94823 1461 aa16.76■□□□□ 0.27
NPC1-202ENST00000540608 CDC42BPAQ5VT25 1732 aa16.76■□□□□ 0.27
NPC1-202ENST00000540608 ARID4BQ4LE39 1312 aaPredicted RBP16.76■□□□□ 0.27
NPC1-202ENST00000540608 ANKRD30AQ9BXX3 1397 aa16.76■□□□□ 0.27
NPC1-202ENST00000540608 PLEKHD1A6NEE1 506 aa16.76■□□□□ 0.27
NPC1-202ENST00000540608 CHD1O14646 1710 aa16.76■□□□□ 0.27
NPC1-202ENST00000540608 ABCC10Q5T3U5 1492 aa16.75■□□□□ 0.27
NPC1-202ENST00000540608 USP47Q96K76 1375 aa16.75■□□□□ 0.27
NPC1-202ENST00000540608 SMG6Q86US8 1419 aaKnown RBP16.74■□□□□ 0.27
NPC1-202ENST00000540608 ANKRD50Q9ULJ7 1429 aa16.74■□□□□ 0.27
NPC1-202ENST00000540608 PKD2Q13563 968 aa16.73■□□□□ 0.27
NPC1-202ENST00000540608 B4GALNT3Q6L9W6 998 aa16.73■□□□□ 0.27
NPC1-202ENST00000540608 BCORL1Q5H9F3 1711 aa16.73■□□□□ 0.27
NPC1-202ENST00000540608 KDM5CP41229 1560 aa16.71■□□□□ 0.27
NPC1-202ENST00000540608 UHRF1BP1Q6BDS2 1440 aa16.7■□□□□ 0.26
NPC1-202ENST00000540608 C9orf84Q5VXU9 1444 aa16.7■□□□□ 0.26
NPC1-202ENST00000540608 SHANK2Q9UPX8 1470 aa16.69■□□□□ 0.26
NPC1-202ENST00000540608 ROCK2O75116 1388 aaKnown RBP16.68■□□□□ 0.26
NPC1-202ENST00000540608 ZNF326Q5BKZ1 582 aaKnown RBP16.68■□□□□ 0.26
NPC1-202ENST00000540608 NUDCQ9Y266 331 aa16.68■□□□□ 0.26
NPC1-202ENST00000540608 RNF123Q5XPI4 1314 aa16.67■□□□□ 0.26
NPC1-202ENST00000540608 ERICH6Q7L0X2 663 aa16.67■□□□□ 0.26
NPC1-202ENST00000540608 NUP155O75694 1391 aa16.67■□□□□ 0.26
NPC1-202ENST00000540608 RALGAPBQ86X10 1494 aa16.66■□□□□ 0.26
NPC1-202ENST00000540608 POLR3GLQ9BT43 218 aa16.66■□□□□ 0.26
NPC1-202ENST00000540608 HNRNPMP52272 730 aaKnown RBP eCLIP16.65■□□□□ 0.26
NPC1-202ENST00000540608 PNISRQ8TF01 805 aaKnown RBP16.65■□□□□ 0.26
NPC1-202ENST00000540608 PTPRGP23470 1445 aa16.65■□□□□ 0.26
NPC1-202ENST00000540608 TSPY4P0CV99 314 aa16.64■□□□□ 0.25
NPC1-202ENST00000540608 TSPY10P0CW01 314 aa16.64■□□□□ 0.25
NPC1-202ENST00000540608 ARHGEF12Q9NZN5 1544 aa16.64■□□□□ 0.25
NPC1-202ENST00000540608 CLASP1Q7Z460 1538 aa16.62■□□□□ 0.25
NPC1-202ENST00000540608 KIF15Q9NS87 1388 aa16.62■□□□□ 0.25
NPC1-202ENST00000540608 SHROOM2Q13796 1616 aa16.62■□□□□ 0.25
NPC1-202ENST00000540608 CARD11Q9BXL7 1154 aa16.62■□□□□ 0.25
NPC1-202ENST00000540608 KDM5DQ9BY66 1539 aa16.62■□□□□ 0.25
NPC1-202ENST00000540608 CNGB1Q14028 1251 aaPredicted RBP16.61■□□□□ 0.25
NPC1-202ENST00000540608 BCL11AQ9H165 835 aa16.61■□□□□ 0.25
NPC1-202ENST00000540608 ARHGEF5Q12774 1597 aa16.61■□□□□ 0.25
NPC1-202ENST00000540608 TMC1Q8TDI8 760 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms