RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 SAMD9Q5K651 1589 aa14.84□□□□□ -0.03
CLIP1-213ENST00000540338 TROQ12816 1431 aaPredicted RBP14.84□□□□□ -0.03
CLIP1-213ENST00000540338 PTPN23Q9H3S7 1636 aa14.83□□□□□ -0.03
CLIP1-213ENST00000540338 PRG4Q92954 1404 aaPredicted RBP14.83□□□□□ -0.04
CLIP1-213ENST00000540338 HNRNPMP52272 730 aaKnown RBP eCLIP14.82□□□□□ -0.04
CLIP1-213ENST00000540338 MAPKBP1O60336 1514 aa14.82□□□□□ -0.04
CLIP1-213ENST00000540338 NPM1P06748 294 aaKnown RBP eCLIP14.82□□□□□ -0.04
CLIP1-213ENST00000540338 WDR62O43379 1518 aa14.82□□□□□ -0.04
CLIP1-213ENST00000540338 NUP155O75694 1391 aa14.82□□□□□ -0.04
CLIP1-213ENST00000540338 UGGT2Q9NYU1 1516 aa14.81□□□□□ -0.04
CLIP1-213ENST00000540338 PTPRKQ15262 1439 aa14.81□□□□□ -0.04
CLIP1-213ENST00000540338 RSPH4AQ5TD94 716 aa14.81□□□□□ -0.04
CLIP1-213ENST00000540338 WDR97A6NE52 1622 aa14.79□□□□□ -0.04
CLIP1-213ENST00000540338 FKBP8Q14318 412 aa14.79□□□□□ -0.04
CLIP1-213ENST00000540338 PBRM1Q86U86 1689 aa14.79□□□□□ -0.04
CLIP1-213ENST00000540338 FAM9BQ8IZU0 186 aa14.78□□□□□ -0.04
CLIP1-213ENST00000540338 MRS2Q9HD23 443 aa14.78□□□□□ -0.04
CLIP1-213ENST00000540338 DAPK1P53355 1430 aa14.78□□□□□ -0.04
CLIP1-213ENST00000540338 PLB1Q6P1J6 1458 aa14.77□□□□□ -0.05
CLIP1-213ENST00000540338 CARD11Q9BXL7 1154 aa14.76□□□□□ -0.05
CLIP1-213ENST00000540338 ROCK1Q13464 1354 aa14.76□□□□□ -0.05
CLIP1-213ENST00000540338 RGL3Q3MIN7 710 aa14.76□□□□□ -0.05
CLIP1-213ENST00000540338 EFCAB2Q5VUJ9 269 aa14.74□□□□□ -0.05
CLIP1-213ENST00000540338 DCAF11Q8TEB1 546 aa14.73□□□□□ -0.05
CLIP1-213ENST00000540338 EIF4G3O43432 1585 aaKnown RBP14.73□□□□□ -0.05
CLIP1-213ENST00000540338 NUP153P49790 1475 aaKnown RBP14.73□□□□□ -0.05
CLIP1-213ENST00000540338 ABCC5O15440 1437 aa14.72□□□□□ -0.05
CLIP1-213ENST00000540338 KIAA0556O60303 1618 aa14.72□□□□□ -0.05
CLIP1-213ENST00000540338 AKNAQ7Z591 1439 aa14.72□□□□□ -0.05
CLIP1-213ENST00000540338 TCOF1Q13428 1488 aaKnown RBP14.71□□□□□ -0.05
CLIP1-213ENST00000540338 ANKRD50Q9ULJ7 1429 aa14.71□□□□□ -0.05
CLIP1-213ENST00000540338 DISP1Q96F81 1524 aa14.71□□□□□ -0.06
CLIP1-213ENST00000540338 RAPGEF6Q8TEU7 1601 aa14.7□□□□□ -0.06
CLIP1-213ENST00000540338 SUPT16HQ9Y5B9 1047 aaKnown RBP14.69□□□□□ -0.06
CLIP1-213ENST00000540338 TMC1Q8TDI8 760 aa14.68□□□□□ -0.06
CLIP1-213ENST00000540338 KIF15Q9NS87 1388 aa14.67□□□□□ -0.06
CLIP1-213ENST00000540338 MAGI3Q5TCQ9 1506 aa14.66□□□□□ -0.06
CLIP1-213ENST00000540338 CAMSAP2Q08AD1 1489 aa14.66□□□□□ -0.06
CLIP1-213ENST00000540338 NUP160Q12769 1436 aa14.64□□□□□ -0.07
CLIP1-213ENST00000540338 C9orf84Q5VXU9 1444 aa14.64□□□□□ -0.07
CLIP1-213ENST00000540338 GPATCH8Q9UKJ3 1502 aaKnown RBP14.63□□□□□ -0.07
CLIP1-213ENST00000540338 ANKRD30BQ9BXX2 1392 aa14.63□□□□□ -0.07
CLIP1-213ENST00000540338 NCOA1Q15788 1441 aa14.63□□□□□ -0.07
CLIP1-213ENST00000540338 KIAA1107Q9UPP5 1409 aa14.62□□□□□ -0.07
CLIP1-213ENST00000540338 WASHC2AQ641Q2 1341 aa14.62□□□□□ -0.07
CLIP1-213ENST00000540338 CHGAP10645 457 aaKnown RBP14.61□□□□□ -0.07
CLIP1-213ENST00000540338 NBPF8Q3BBV2 869 aa14.61□□□□□ -0.07
CLIP1-213ENST00000540338 ARHGEF11O15085 1522 aa14.61□□□□□ -0.07
CLIP1-213ENST00000540338 SPAG9O60271 1321 aaKnown RBP14.6□□□□□ -0.07
CLIP1-213ENST00000540338 ATP10BO94823 1461 aa14.6□□□□□ -0.07
CLIP1-213ENST00000540338 CCDC7Q96M83 1385 aa14.59□□□□□ -0.07
CLIP1-213ENST00000540338 KIF14Q15058 1648 aa14.58□□□□□ -0.08
CLIP1-213ENST00000540338 ROCK2O75116 1388 aaKnown RBP14.58□□□□□ -0.08
CLIP1-213ENST00000540338 CCDC144AA2RUR9 1427 aa14.58□□□□□ -0.08
CLIP1-213ENST00000540338 USP47Q96K76 1375 aa14.57□□□□□ -0.08
CLIP1-213ENST00000540338 CEP170Q5SW79 1584 aa14.57□□□□□ -0.08
CLIP1-213ENST00000540338 ERICH6Q7L0X2 663 aa14.57□□□□□ -0.08
CLIP1-213ENST00000540338 ARHGAP5Q13017 1502 aa14.57□□□□□ -0.08
CLIP1-213ENST00000540338 PRKRIP1Q9H875 184 aaPredicted RBP14.57□□□□□ -0.08
CLIP1-213ENST00000540338 KANK1Q14678 1352 aa14.57□□□□□ -0.08
CLIP1-213ENST00000540338 RPRD2Q5VT52 1461 aaKnown RBP14.55□□□□□ -0.08
CLIP1-213ENST00000540338 KIF7Q2M1P5 1343 aa14.55□□□□□ -0.08
CLIP1-213ENST00000540338 IRX6P78412 446 aaPredicted RBP14.54□□□□□ -0.08
CLIP1-213ENST00000540338 CNTLNQ9NXG0 1405 aa14.54□□□□□ -0.08
CLIP1-213ENST00000540338 ST20-MTHFSA0A0A6YYL1 179 aa14.53□□□□□ -0.08
CLIP1-213ENST00000540338 ITSN2Q9NZM3 1697 aa14.53□□□□□ -0.08
CLIP1-213ENST00000540338 PLEKHH2Q8IVE3 1493 aa14.52□□□□□ -0.08
CLIP1-213ENST00000540338 CCDC141Q6ZP82 1450 aa14.52□□□□□ -0.09
CLIP1-213ENST00000540338 TMF1P82094 1093 aa14.51□□□□□ -0.09
CLIP1-213ENST00000540338 CDCA8Q53HL2 280 aa14.51□□□□□ -0.09
CLIP1-213ENST00000540338 DNMT1P26358 1616 aaKnown RBP14.51□□□□□ -0.09
CLIP1-213ENST00000540338 KIF3BO15066 747 aa14.51□□□□□ -0.09
CLIP1-213ENST00000540338 ARID4BQ4LE39 1312 aaPredicted RBP14.5□□□□□ -0.09
CLIP1-213ENST00000540338 MYT1Q01538 1121 aa14.49□□□□□ -0.09
CLIP1-213ENST00000540338 SALL2Q9Y467 1007 aaPredicted RBP14.49□□□□□ -0.09
CLIP1-213ENST00000540338 OSCARQ8IYS5 282 aa14.48□□□□□ -0.09
CLIP1-213ENST00000540338 AFAP1Q8N556 730 aa14.47□□□□□ -0.09
CLIP1-213ENST00000540338 RALBP1Q15311 655 aa14.46□□□□□ -0.09
CLIP1-213ENST00000540338 GCC2Q8IWJ2 1684 aa14.46□□□□□ -0.09
CLIP1-213ENST00000540338 KNSTRNQ9Y448 316 aa14.46□□□□□ -0.09
CLIP1-213ENST00000540338 C11orf95C9JLR9 678 aaPredicted RBP14.45□□□□□ -0.1
CLIP1-213ENST00000540338 SENP3-EIF4A1A0A087X0R7 540 aa14.44□□□□□ -0.1
CLIP1-213ENST00000540338 LRRIQ1Q96JM4 1722 aa14.44□□□□□ -0.1
CLIP1-213ENST00000540338 CC2D1BQ5T0F9 858 aaKnown RBP14.43□□□□□ -0.1
CLIP1-213ENST00000540338 ADGRL2O95490 1459 aa14.43□□□□□ -0.1
CLIP1-213ENST00000540338 WDR43Q15061 677 aaKnown RBP eCLIP14.43□□□□□ -0.1
CLIP1-213ENST00000540338 KTN1Q86UP2 1357 aaKnown RBP14.43□□□□□ -0.1
CLIP1-213ENST00000540338 SLC24A1O60721 1099 aa14.42□□□□□ -0.1
CLIP1-213ENST00000540338 GGT6Q6P531 493 aa14.42□□□□□ -0.1
CLIP1-213ENST00000540338 SHANK2Q9UPX8 1470 aa14.42□□□□□ -0.1
CLIP1-213ENST00000540338 ABCA8O94911 1581 aa14.41□□□□□ -0.1
CLIP1-213ENST00000540338 PZPP20742 1482 aa14.41□□□□□ -0.1
CLIP1-213ENST00000540338 KDM6BO15054 1643 aa14.4□□□□□ -0.1
CLIP1-213ENST00000540338 PPP4R2Q9NY27 417 aa14.4□□□□□ -0.1
CLIP1-213ENST00000540338 STAG3Q9UJ98 1225 aa14.4□□□□□ -0.1
CLIP1-213ENST00000540338 CCDC136Q96JN2 1154 aa14.38□□□□□ -0.11
CLIP1-213ENST00000540338 ZBED9Q6R2W3 1325 aa14.38□□□□□ -0.11
CLIP1-213ENST00000540338 ABCC10Q5T3U5 1492 aa14.38□□□□□ -0.11
CLIP1-213ENST00000540338 ERICH6BQ5W0A0 696 aa14.38□□□□□ -0.11
CLIP1-213ENST00000540338 STAC3Q96MF2 364 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms