RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 AKNAQ7Z591 1439 aa15.21■□□□□ 0.03
SYNE1-237ENST00000539504 RTL5Q5HYW3 569 aaPredicted RBP15.2■□□□□ 0.02
SYNE1-237ENST00000539504 NUDCQ9Y266 331 aa15.2■□□□□ 0.02
SYNE1-237ENST00000539504 UGGT2Q9NYU1 1516 aa15.2■□□□□ 0.02
SYNE1-237ENST00000539504 GAPVD1Q14C86 1478 aa15.2■□□□□ 0.02
SYNE1-237ENST00000539504 TMC1Q8TDI8 760 aa15.2■□□□□ 0.02
SYNE1-237ENST00000539504 DENND4BO75064 1496 aaPredicted RBP15.19■□□□□ 0.02
SYNE1-237ENST00000539504 ZBTB47Q9UFB7 747 aaPredicted RBP15.18■□□□□ 0.02
SYNE1-237ENST00000539504 ZNF644Q9H582 1327 aaPredicted RBP15.17■□□□□ 0.02
SYNE1-237ENST00000539504 ANKRD30BQ9BXX2 1392 aa15.17■□□□□ 0.02
SYNE1-237ENST00000539504 MAGI3Q5TCQ9 1506 aa15.17■□□□□ 0.02
SYNE1-237ENST00000539504 NPM2Q86SE8 214 aaKnown RBP15.16■□□□□ 0.02
SYNE1-237ENST00000539504 KDM6BO15054 1643 aa15.16■□□□□ 0.02
SYNE1-237ENST00000539504 ZNF777Q9ULD5 760 aaPredicted RBP15.16■□□□□ 0.02
SYNE1-237ENST00000539504 SALL2Q9Y467 1007 aaPredicted RBP15.15■□□□□ 0.02
SYNE1-237ENST00000539504 SAMD9Q5K651 1589 aa15.14■□□□□ 0.01
SYNE1-237ENST00000539504 TCOF1Q13428 1488 aaKnown RBP15.14■□□□□ 0.01
SYNE1-237ENST00000539504 SMG6Q86US8 1419 aaKnown RBP15.13■□□□□ 0.01
SYNE1-237ENST00000539504 HECW1Q76N89 1606 aa15.13■□□□□ 0.01
SYNE1-237ENST00000539504 IPO9Q96P70 1041 aaKnown RBP15.13■□□□□ 0.01
SYNE1-237ENST00000539504 CDK13Q14004 1512 aaKnown RBP15.13■□□□□ 0.01
SYNE1-237ENST00000539504 RPRD2Q5VT52 1461 aaKnown RBP15.13■□□□□ 0.01
SYNE1-237ENST00000539504 THOC2Q8NI27 1593 aaKnown RBP15.13■□□□□ 0.01
SYNE1-237ENST00000539504 MIA2Q96PC5 1412 aa15.12■□□□□ 0.01
SYNE1-237ENST00000539504 EPRSP07814 1512 aaKnown RBP15.12■□□□□ 0.01
SYNE1-237ENST00000539504 URB2Q14146 1524 aaKnown RBP15.12■□□□□ 0.01
SYNE1-237ENST00000539504 LRRIQ1Q96JM4 1722 aa15.12■□□□□ 0.01
SYNE1-237ENST00000539504 USP47Q96K76 1375 aa15.11■□□□□ 0.01
SYNE1-237ENST00000539504 KDM2AQ9Y2K7 1162 aa15.09■□□□□ 0.01
SYNE1-237ENST00000539504 ARHGEF11O15085 1522 aa15.09■□□□□ 0.01
SYNE1-237ENST00000539504 PKD2Q13563 968 aa15.09■□□□□ 0.01
SYNE1-237ENST00000539504 DAPK1P53355 1430 aa15.09■□□□□ 0.01
SYNE1-237ENST00000539504 GCC2Q8IWJ2 1684 aa15.08■□□□□ 0.01
SYNE1-237ENST00000539504 CARD11Q9BXL7 1154 aa15.08■□□□□ 0
SYNE1-237ENST00000539504 CFDP1Q9UEE9 299 aaPredicted RBP15.08■□□□□ 0
SYNE1-237ENST00000539504 SPATA31E1Q6ZUB1 1445 aa15.08■□□□□ 0
SYNE1-237ENST00000539504 TEX14Q8IWB6 1497 aa15.07■□□□□ 0
SYNE1-237ENST00000539504 PNISRQ8TF01 805 aaKnown RBP15.07■□□□□ 0
SYNE1-237ENST00000539504 ABCC5O15440 1437 aa15.06■□□□□ 0
SYNE1-237ENST00000539504 DHX29Q7Z478 1369 aaKnown RBP15.06■□□□□ 0
SYNE1-237ENST00000539504 ROCK1Q13464 1354 aa15.05■□□□□ -0
SYNE1-237ENST00000539504 EXOC6Q8TAG9 804 aa15.03■□□□□ -0
SYNE1-237ENST00000539504 LAS1LQ9Y4W2 734 aaKnown RBP15.02■□□□□ -0
SYNE1-237ENST00000539504 PDS5BQ9NTI5 1447 aa15.02□□□□□ -0.01
SYNE1-237ENST00000539504 RNF123Q5XPI4 1314 aa15.02□□□□□ -0.01
SYNE1-237ENST00000539504 ABCA5Q8WWZ7 1642 aa15.01□□□□□ -0.01
SYNE1-237ENST00000539504 LAMC3Q9Y6N6 1575 aa15.01□□□□□ -0.01
SYNE1-237ENST00000539504 RRP1P56182 461 aaKnown RBP15.01□□□□□ -0.01
SYNE1-237ENST00000539504 ST20-MTHFSA0A0A6YYL1 179 aa15□□□□□ -0.01
SYNE1-237ENST00000539504 RCAN3Q9UKA8 241 aa15□□□□□ -0.01
SYNE1-237ENST00000539504 KIF15Q9NS87 1388 aa14.98□□□□□ -0.01
SYNE1-237ENST00000539504 IQGAP2Q13576 1575 aa14.98□□□□□ -0.01
SYNE1-237ENST00000539504 ROCK2O75116 1388 aaKnown RBP14.98□□□□□ -0.01
SYNE1-237ENST00000539504 DCAF11Q8TEB1 546 aa14.98□□□□□ -0.01
SYNE1-237ENST00000539504 MYBBP1AQ9BQG0 1328 aaKnown RBP14.97□□□□□ -0.01
SYNE1-237ENST00000539504 ARID4BQ4LE39 1312 aaPredicted RBP14.97□□□□□ -0.01
SYNE1-237ENST00000539504 TCERG1O14776 1098 aaKnown RBP14.97□□□□□ -0.01
SYNE1-237ENST00000539504 KIAA1107Q9UPP5 1409 aa14.96□□□□□ -0.01
SYNE1-237ENST00000539504 NEFMP07197 916 aa14.96□□□□□ -0.01
SYNE1-237ENST00000539504 PDE4AP27815 886 aa14.96□□□□□ -0.01
SYNE1-237ENST00000539504 RALBP1Q15311 655 aa14.96□□□□□ -0.01
SYNE1-237ENST00000539504 NUP155O75694 1391 aa14.95□□□□□ -0.02
SYNE1-237ENST00000539504 DNAJC5BQ9UF47 199 aa14.95□□□□□ -0.02
SYNE1-237ENST00000539504 PZPP20742 1482 aa14.95□□□□□ -0.02
SYNE1-237ENST00000539504 WDR62O43379 1518 aa14.94□□□□□ -0.02
SYNE1-237ENST00000539504 ANKRD30AQ9BXX3 1397 aa14.93□□□□□ -0.02
SYNE1-237ENST00000539504 RTN4Q9NQC3 1192 aaKnown RBP14.93□□□□□ -0.02
SYNE1-237ENST00000539504 PRG4Q92954 1404 aaPredicted RBP14.93□□□□□ -0.02
SYNE1-237ENST00000539504 KIF21AQ7Z4S6 1674 aa14.93□□□□□ -0.02
SYNE1-237ENST00000539504 PLIN1O60240 522 aa14.93□□□□□ -0.02
SYNE1-237ENST00000539504 BRD4O60885 1362 aaPredicted RBP14.92□□□□□ -0.02
SYNE1-237ENST00000539504 CDCA7LQ96GN5 454 aa14.92□□□□□ -0.02
SYNE1-237ENST00000539504 NLRP13Q86W25 1043 aa14.91□□□□□ -0.02
SYNE1-237ENST00000539504 DNMT1P26358 1616 aaKnown RBP14.91□□□□□ -0.02
SYNE1-237ENST00000539504 RGL3Q3MIN7 710 aa14.91□□□□□ -0.02
SYNE1-237ENST00000539504 TSPY4P0CV99 314 aa14.9□□□□□ -0.02
SYNE1-237ENST00000539504 TSPY10P0CW01 314 aa14.9□□□□□ -0.02
SYNE1-237ENST00000539504 FBLN2P98095 1184 aa14.9□□□□□ -0.02
SYNE1-237ENST00000539504 CC2D1BQ5T0F9 858 aaKnown RBP14.9□□□□□ -0.02
SYNE1-237ENST00000539504 BCORL1Q5H9F3 1711 aa14.89□□□□□ -0.03
SYNE1-237ENST00000539504 ANKRD50Q9ULJ7 1429 aa14.89□□□□□ -0.03
SYNE1-237ENST00000539504 KTN1Q86UP2 1357 aaKnown RBP14.89□□□□□ -0.03
SYNE1-237ENST00000539504 DAXXQ9UER7 740 aaPredicted RBP14.89□□□□□ -0.03
SYNE1-237ENST00000539504 CAMSAP2Q08AD1 1489 aa14.88□□□□□ -0.03
SYNE1-237ENST00000539504 SKAP1Q86WV1 359 aa14.88□□□□□ -0.03
SYNE1-237ENST00000539504 BACH2Q9BYV9 841 aa14.88□□□□□ -0.03
SYNE1-237ENST00000539504 NUP153P49790 1475 aaKnown RBP14.88□□□□□ -0.03
SYNE1-237ENST00000539504 IL27Q8NEV9 243 aa14.87□□□□□ -0.03
SYNE1-237ENST00000539504 PDE3BQ13370 1112 aa14.87□□□□□ -0.03
SYNE1-237ENST00000539504 LRPPRCP42704 1394 aaKnown RBP14.87□□□□□ -0.03
SYNE1-237ENST00000539504 PPM1GO15355 546 aaPredicted RBP14.86□□□□□ -0.03
SYNE1-237ENST00000539504 MBD5Q9P267 1494 aa14.86□□□□□ -0.03
SYNE1-237ENST00000539504 TROQ12816 1431 aaPredicted RBP14.86□□□□□ -0.03
SYNE1-237ENST00000539504 MS4A1P11836 297 aa14.85□□□□□ -0.03
SYNE1-237ENST00000539504 PLEKHD1A6NEE1 506 aa14.85□□□□□ -0.03
SYNE1-237ENST00000539504 CRBNQ96SW2 442 aa14.85□□□□□ -0.03
SYNE1-237ENST00000539504 RALGAPBQ86X10 1494 aa14.83□□□□□ -0.03
SYNE1-237ENST00000539504 KDM5CP41229 1560 aa14.83□□□□□ -0.04
SYNE1-237ENST00000539504 POLR1AO95602 1720 aaPredicted RBP14.83□□□□□ -0.04
SYNE1-237ENST00000539504 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms