RNA–Protein interactions for RNA: ENST00000539449.2

RTN4IP1-204, Transcript of reticulon 4 interacting protein 1, humanhuman

TSL 2 BASIC

Gene RTN4IP1, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4IP1-204ENST00000539449 HECW1Q76N89 1606 aa14.26□□□□□ -0.13
RTN4IP1-204ENST00000539449 MAP3K1Q13233 1512 aa14.26□□□□□ -0.13
RTN4IP1-204ENST00000539449 ARID4BQ4LE39 1312 aaPredicted RBP14.26□□□□□ -0.13
RTN4IP1-204ENST00000539449 ARID3CA6NKF2 412 aa14.26□□□□□ -0.13
RTN4IP1-204ENST00000539449 NUP153P49790 1475 aaKnown RBP14.25□□□□□ -0.13
RTN4IP1-204ENST00000539449 CDK13Q14004 1512 aaKnown RBP14.25□□□□□ -0.13
RTN4IP1-204ENST00000539449 LRRC9Q6ZRR7 1453 aa14.22□□□□□ -0.13
RTN4IP1-204ENST00000539449 RAPGEF3O95398 923 aa14.2□□□□□ -0.14
RTN4IP1-204ENST00000539449 CCDC18Q5T9S5 1454 aa14.18□□□□□ -0.14
RTN4IP1-204ENST00000539449 TRIM26Q12899 539 aaPredicted RBP14.18□□□□□ -0.14
RTN4IP1-204ENST00000539449 PHLDB1Q86UU1 1377 aa14.18□□□□□ -0.14
RTN4IP1-204ENST00000539449 ATP10BO94823 1461 aa14.18□□□□□ -0.14
RTN4IP1-204ENST00000539449 PCGF6Q9BYE7 350 aa14.17□□□□□ -0.14
RTN4IP1-204ENST00000539449 FRMPD1Q5SYB0 1578 aa14.17□□□□□ -0.14
RTN4IP1-204ENST00000539449 STRCQ7RTU9 1775 aa14.14□□□□□ -0.15
RTN4IP1-204ENST00000539449 ARHGEF40Q8TER5 1519 aa14.13□□□□□ -0.15
RTN4IP1-204ENST00000539449 YEATS2Q9ULM3 1422 aa14.13□□□□□ -0.15
RTN4IP1-204ENST00000539449 MTUS2Q5JR59 1369 aa14.12□□□□□ -0.15
RTN4IP1-204ENST00000539449 EHBP1L1Q8N3D4 1523 aa14.12□□□□□ -0.15
RTN4IP1-204ENST00000539449 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.12□□□□□ -0.15
RTN4IP1-204ENST00000539449 HNRNPUL2Q1KMD3 747 aaKnown RBP14.12□□□□□ -0.15
RTN4IP1-204ENST00000539449 DMRT2Q9Y5R5 561 aa14.12□□□□□ -0.15
RTN4IP1-204ENST00000539449 ABCA9Q8IUA7 1624 aa14.12□□□□□ -0.15
RTN4IP1-204ENST00000539449 PREX1Q8TCU6 1659 aa14.11□□□□□ -0.15
RTN4IP1-204ENST00000539449 NEO1Q92859 1461 aa14.11□□□□□ -0.15
RTN4IP1-204ENST00000539449 SUPT6HQ7KZ85 1726 aaKnown RBP14.1□□□□□ -0.15
RTN4IP1-204ENST00000539449 FER1L4A9Z1Z3 1794 aa14.09□□□□□ -0.15
RTN4IP1-204ENST00000539449 POGZQ7Z3K3 1410 aa14.09□□□□□ -0.15
RTN4IP1-204ENST00000539449 TTC37Q6PGP7 1564 aa14.09□□□□□ -0.15
RTN4IP1-204ENST00000539449 NCOA2Q15596 1464 aa14.08□□□□□ -0.16
RTN4IP1-204ENST00000539449 SIGLEC1Q9BZZ2 1709 aa14.08□□□□□ -0.16
RTN4IP1-204ENST00000539449 KIF14Q15058 1648 aa14.08□□□□□ -0.16
RTN4IP1-204ENST00000539449 FANCAO15360 1455 aa14.07□□□□□ -0.16
RTN4IP1-204ENST00000539449 TROQ12816 1431 aaPredicted RBP14.07□□□□□ -0.16
RTN4IP1-204ENST00000539449 IQSEC2Q5JU85 1478 aa14.06□□□□□ -0.16
RTN4IP1-204ENST00000539449 LTBP4Q8N2S1 1624 aa14.05□□□□□ -0.16
RTN4IP1-204ENST00000539449 RICTORQ6R327 1708 aa14.05□□□□□ -0.16
RTN4IP1-204ENST00000539449 PLEKHD1A6NEE1 506 aa14.04□□□□□ -0.16
RTN4IP1-204ENST00000539449 CDK11AQ9UQ88 783 aaPredicted RBP14.04□□□□□ -0.16
RTN4IP1-204ENST00000539449 RRBP1Q9P2E9 1410 aaKnown RBP14.04□□□□□ -0.16
RTN4IP1-204ENST00000539449 PTPRTO14522 1441 aa14.03□□□□□ -0.16
RTN4IP1-204ENST00000539449 AKNAQ7Z591 1439 aa14.02□□□□□ -0.16
RTN4IP1-204ENST00000539449 MLECQ14165 292 aa14.02□□□□□ -0.17
RTN4IP1-204ENST00000539449 DENND4BO75064 1496 aaPredicted RBP14□□□□□ -0.17
RTN4IP1-204ENST00000539449 MYOM3Q5VTT5 1437 aa13.99□□□□□ -0.17
RTN4IP1-204ENST00000539449 CCNB3Q8WWL7 1395 aa13.99□□□□□ -0.17
RTN4IP1-204ENST00000539449 FGD6Q6ZV73 1430 aa13.98□□□□□ -0.17
RTN4IP1-204ENST00000539449 CDC42BPAQ5VT25 1732 aa13.98□□□□□ -0.17
RTN4IP1-204ENST00000539449 ZFYVE16Q7Z3T8 1539 aa13.98□□□□□ -0.17
RTN4IP1-204ENST00000539449 UHRF1BP1Q6BDS2 1440 aa13.98□□□□□ -0.17
RTN4IP1-204ENST00000539449 ZMYM4Q5VZL5 1548 aa13.97□□□□□ -0.17
RTN4IP1-204ENST00000539449 SETD1BQ9UPS6 1966 aaKnown RBP13.97□□□□□ -0.17
RTN4IP1-204ENST00000539449 CEBPAP49715 358 aaPredicted RBP13.97□□□□□ -0.17
RTN4IP1-204ENST00000539449 MED1Q15648 1581 aaPredicted RBP13.96□□□□□ -0.17
RTN4IP1-204ENST00000539449 ARHGEF12Q9NZN5 1544 aa13.96□□□□□ -0.17
RTN4IP1-204ENST00000539449 GPATCH8Q9UKJ3 1502 aaKnown RBP13.96□□□□□ -0.17
RTN4IP1-204ENST00000539449 PTPN23Q9H3S7 1636 aa13.96□□□□□ -0.17
RTN4IP1-204ENST00000539449 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.95□□□□□ -0.18
RTN4IP1-204ENST00000539449 FAM50AQ14320 339 aaKnown RBP13.95□□□□□ -0.18
RTN4IP1-204ENST00000539449 UBAP1LF5GYI3 381 aa13.94□□□□□ -0.18
RTN4IP1-204ENST00000539449 CDC42BPBQ9Y5S2 1711 aa13.94□□□□□ -0.18
RTN4IP1-204ENST00000539449 ITSN2Q9NZM3 1697 aa13.93□□□□□ -0.18
RTN4IP1-204ENST00000539449 TCOF1Q13428 1488 aaKnown RBP13.93□□□□□ -0.18
RTN4IP1-204ENST00000539449 ZNF644Q9H582 1327 aaPredicted RBP13.92□□□□□ -0.18
RTN4IP1-204ENST00000539449 ITGAEP38570 1179 aa13.92□□□□□ -0.18
RTN4IP1-204ENST00000539449 MAGI2Q86UL8 1455 aa13.92□□□□□ -0.18
RTN4IP1-204ENST00000539449 CFAP74Q9C0B2 1584 aa13.92□□□□□ -0.18
RTN4IP1-204ENST00000539449 MIA2Q96PC5 1412 aa13.9□□□□□ -0.18
RTN4IP1-204ENST00000539449 MYO5CQ9NQX4 1742 aa13.9□□□□□ -0.18
RTN4IP1-204ENST00000539449 PREX2Q70Z35 1606 aa13.9□□□□□ -0.19
RTN4IP1-204ENST00000539449 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.89□□□□□ -0.19
RTN4IP1-204ENST00000539449 PTPRKQ15262 1439 aa13.89□□□□□ -0.19
RTN4IP1-204ENST00000539449 CFDP1Q9UEE9 299 aaPredicted RBP13.87□□□□□ -0.19
RTN4IP1-204ENST00000539449 ZNF777Q9ULD5 760 aaPredicted RBP13.87□□□□□ -0.19
RTN4IP1-204ENST00000539449 NCOA1Q15788 1441 aa13.86□□□□□ -0.19
RTN4IP1-204ENST00000539449 CAMSAP2Q08AD1 1489 aa13.86□□□□□ -0.19
RTN4IP1-204ENST00000539449 SAMD9LQ8IVG5 1584 aa13.85□□□□□ -0.19
RTN4IP1-204ENST00000539449 ATP10AO60312 1499 aa13.85□□□□□ -0.19
RTN4IP1-204ENST00000539449 C9orf84Q5VXU9 1444 aa13.84□□□□□ -0.19
RTN4IP1-204ENST00000539449 HSPA1LP34931 641 aa13.84□□□□□ -0.19
RTN4IP1-204ENST00000539449 C3P01024 1663 aa13.84□□□□□ -0.19
RTN4IP1-204ENST00000539449 ZNF335Q9H4Z2 1342 aaPredicted RBP13.84□□□□□ -0.19
RTN4IP1-204ENST00000539449 PLCH2O75038 1416 aa13.83□□□□□ -0.2
RTN4IP1-204ENST00000539449 ARHGAP5Q13017 1502 aa13.83□□□□□ -0.2
RTN4IP1-204ENST00000539449 DNMT1P26358 1616 aaKnown RBP13.82□□□□□ -0.2
RTN4IP1-204ENST00000539449 ABCC5O15440 1437 aa13.81□□□□□ -0.2
RTN4IP1-204ENST00000539449 DAPK1P53355 1430 aa13.8□□□□□ -0.2
RTN4IP1-204ENST00000539449 CROCC2H7BZ55 1655 aa13.79□□□□□ -0.2
RTN4IP1-204ENST00000539449 HNRNPMP52272 730 aaKnown RBP eCLIP13.79□□□□□ -0.2
RTN4IP1-204ENST00000539449 CHIC2Q9UKJ5 165 aa13.79□□□□□ -0.2
RTN4IP1-204ENST00000539449 SCAPERQ9BY12 1400 aa13.79□□□□□ -0.2
RTN4IP1-204ENST00000539449 CAMSAP1Q5T5Y3 1602 aa13.79□□□□□ -0.2
RTN4IP1-204ENST00000539449 SCAF1Q9H7N4 1312 aaKnown RBP13.78□□□□□ -0.2
RTN4IP1-204ENST00000539449 TRAPPC8Q9Y2L5 1435 aa13.78□□□□□ -0.2
RTN4IP1-204ENST00000539449 MBD5Q9P267 1494 aa13.78□□□□□ -0.2
RTN4IP1-204ENST00000539449 ARHGEF5Q12774 1597 aa13.76□□□□□ -0.21
RTN4IP1-204ENST00000539449 SYCP2Q9BX26 1530 aa13.76□□□□□ -0.21
RTN4IP1-204ENST00000539449 PIP4K2BP78356 416 aa13.76□□□□□ -0.21
RTN4IP1-204ENST00000539449 EFCAB2Q5VUJ9 269 aa13.76□□□□□ -0.21
RTN4IP1-204ENST00000539449 NCKAP5LQ9HCH0 1330 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms