RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 TSHZ2Q9NRE2 1034 aa12.65□□□□□ -0.38
COL4A6-208ENST00000538570 LMOD2Q6P5Q4 547 aa12.64□□□□□ -0.39
COL4A6-208ENST00000538570 SPRYD3Q8NCJ5 442 aa12.63□□□□□ -0.39
COL4A6-208ENST00000538570 ANO8Q9HCE9 1232 aaPredicted RBP12.62□□□□□ -0.39
COL4A6-208ENST00000538570 BAZ1AQ9NRL2 1556 aaPredicted RBP12.62□□□□□ -0.39
COL4A6-208ENST00000538570 TMF1P82094 1093 aa12.62□□□□□ -0.39
COL4A6-208ENST00000538570 SIN3AQ96ST3 1273 aa12.61□□□□□ -0.39
COL4A6-208ENST00000538570 CLSTN1O94985 981 aa12.61□□□□□ -0.39
COL4A6-208ENST00000538570 TNIKQ9UKE5 1360 aa12.6□□□□□ -0.39
COL4A6-208ENST00000538570 GNL2Q13823 731 aaKnown RBP12.59□□□□□ -0.39
COL4A6-208ENST00000538570 CEP164Q9UPV0 1460 aa12.59□□□□□ -0.39
COL4A6-208ENST00000538570 GBP4Q96PP9 640 aa12.59□□□□□ -0.39
COL4A6-208ENST00000538570 KIAA2012Q0VF49 1180 aa12.58□□□□□ -0.4
COL4A6-208ENST00000538570 MYO15BQ96JP2 1530 aa12.56□□□□□ -0.4
COL4A6-208ENST00000538570 CCER2I3L3R5 266 aa12.56□□□□□ -0.4
COL4A6-208ENST00000538570 KIAA1211Q6ZU35 1233 aa12.56□□□□□ -0.4
COL4A6-208ENST00000538570 MORC1Q86VD1 984 aa12.55□□□□□ -0.4
COL4A6-208ENST00000538570 CECR2Q9BXF3 1484 aa12.55□□□□□ -0.4
COL4A6-208ENST00000538570 GZF1Q9H116 711 aaPredicted RBP12.54□□□□□ -0.4
COL4A6-208ENST00000538570 IPO8O15397 1037 aaKnown RBP12.54□□□□□ -0.4
COL4A6-208ENST00000538570 DCAF11Q8TEB1 546 aa12.54□□□□□ -0.4
COL4A6-208ENST00000538570 HTATSF1O43719 755 aaKnown RBP12.54□□□□□ -0.4
COL4A6-208ENST00000538570 PDE4CQ08493 712 aa12.53□□□□□ -0.4
COL4A6-208ENST00000538570 NCBP3Q53F19 620 aaKnown RBP12.53□□□□□ -0.4
COL4A6-208ENST00000538570 RTF1Q92541 710 aaKnown RBP12.53□□□□□ -0.4
COL4A6-208ENST00000538570 ISY1Q9ULR0 285 aaKnown RBP12.53□□□□□ -0.4
COL4A6-208ENST00000538570 SYAP1Q96A49 352 aaPredicted RBP12.53□□□□□ -0.4
COL4A6-208ENST00000538570 GOLGA6L3A6NEY3 463 aa12.53□□□□□ -0.4
COL4A6-208ENST00000538570 NOC3LQ8WTT2 800 aaKnown RBP12.52□□□□□ -0.4
COL4A6-208ENST00000538570 SRPK2P78362 688 aaKnown RBP12.52□□□□□ -0.41
COL4A6-208ENST00000538570 KANK1Q14678 1352 aa12.52□□□□□ -0.41
COL4A6-208ENST00000538570 SETQ01105 290 aaPredicted RBP12.51□□□□□ -0.41
COL4A6-208ENST00000538570 TPM4P67936 248 aa12.51□□□□□ -0.41
COL4A6-208ENST00000538570 APBB1O00213 710 aa12.5□□□□□ -0.41
COL4A6-208ENST00000538570 IPO9Q96P70 1041 aaKnown RBP12.5□□□□□ -0.41
COL4A6-208ENST00000538570 RWDD1Q9H446 243 aaPredicted RBP12.5□□□□□ -0.41
COL4A6-208ENST00000538570 KTN1Q86UP2 1357 aaKnown RBP12.5□□□□□ -0.41
COL4A6-208ENST00000538570 CCNB3Q8WWL7 1395 aa12.5□□□□□ -0.41
COL4A6-208ENST00000538570 SOX12O15370 315 aa12.49□□□□□ -0.41
COL4A6-208ENST00000538570 HDGFP51858 240 aaKnown RBP12.49□□□□□ -0.41
COL4A6-208ENST00000538570 ERCC6Q03468 1493 aa12.49□□□□□ -0.41
COL4A6-208ENST00000538570 TCERG1O14776 1098 aaKnown RBP12.49□□□□□ -0.41
COL4A6-208ENST00000538570 ZNF771Q7L3S4 317 aaPredicted RBP12.48□□□□□ -0.41
COL4A6-208ENST00000538570 CALD1Q05682 793 aaKnown RBP12.48□□□□□ -0.41
COL4A6-208ENST00000538570 SLKQ9H2G2 1235 aaPredicted RBP12.48□□□□□ -0.41
COL4A6-208ENST00000538570 ITPRIPQ8IWB1 547 aa12.47□□□□□ -0.41
COL4A6-208ENST00000538570 RCAN3Q9UKA8 241 aa12.47□□□□□ -0.41
COL4A6-208ENST00000538570 HSPA5P11021 654 aaKnown RBP12.46□□□□□ -0.41
COL4A6-208ENST00000538570 USP35Q9P2H5 1018 aa12.46□□□□□ -0.41
COL4A6-208ENST00000538570 GOLGA6L1Q8N7Z2 621 aa12.45□□□□□ -0.42
COL4A6-208ENST00000538570 PMFBP1Q8TBY8 1022 aa12.45□□□□□ -0.42
COL4A6-208ENST00000538570 HDGFL2Q7Z4V5 671 aaPredicted RBP12.45□□□□□ -0.42
COL4A6-208ENST00000538570 CSPP1Q1MSJ5 1256 aa12.45□□□□□ -0.42
COL4A6-208ENST00000538570 FHAD1B1AJZ9 1412 aa12.44□□□□□ -0.42
COL4A6-208ENST00000538570 CARMIL1Q5VZK9 1371 aa12.44□□□□□ -0.42
COL4A6-208ENST00000538570 CCDC34Q96HJ3 373 aa12.44□□□□□ -0.42
COL4A6-208ENST00000538570 SAFB2Q14151 953 aaKnown RBP eCLIP12.43□□□□□ -0.42
COL4A6-208ENST00000538570 HSP90B1P14625 803 aaKnown RBP12.43□□□□□ -0.42
COL4A6-208ENST00000538570 MFAP1P55081 439 aaKnown RBP12.43□□□□□ -0.42
COL4A6-208ENST00000538570 GPATCH3Q96I76 525 aa12.42□□□□□ -0.42
COL4A6-208ENST00000538570 CUX2O14529 1486 aa12.42□□□□□ -0.42
COL4A6-208ENST00000538570 RALBP1Q15311 655 aa12.42□□□□□ -0.42
COL4A6-208ENST00000538570 U2AF1L5P0DN76 240 aaPredicted RBP12.41□□□□□ -0.42
COL4A6-208ENST00000538570 TRHP20396 242 aaPredicted RBP12.41□□□□□ -0.42
COL4A6-208ENST00000538570 U2AF1Q01081 240 aaKnown RBP eCLIP12.41□□□□□ -0.42
COL4A6-208ENST00000538570 SETD5Q9C0A6 1442 aa12.4□□□□□ -0.42
COL4A6-208ENST00000538570 CHMP4AQ9BY43 222 aa12.4□□□□□ -0.42
COL4A6-208ENST00000538570 SOGA1O94964 1423 aa12.39□□□□□ -0.43
COL4A6-208ENST00000538570 TRIM6-TRIM34B2RNG4 842 aa12.39□□□□□ -0.43
COL4A6-208ENST00000538570 PHF14O94880 888 aa12.39□□□□□ -0.43
COL4A6-208ENST00000538570 GSE1Q14687 1217 aa12.39□□□□□ -0.43
COL4A6-208ENST00000538570 GORABQ5T7V8 394 aa12.38□□□□□ -0.43
COL4A6-208ENST00000538570 HMMRO75330 724 aa12.38□□□□□ -0.43
COL4A6-208ENST00000538570 STK31Q9BXU1 1019 aa12.38□□□□□ -0.43
COL4A6-208ENST00000538570 MROH2BQ7Z745 1585 aa12.38□□□□□ -0.43
COL4A6-208ENST00000538570 STK26Q9P289 416 aa12.38□□□□□ -0.43
COL4A6-208ENST00000538570 ROCK2O75116 1388 aaKnown RBP12.37□□□□□ -0.43
COL4A6-208ENST00000538570 SPAG9O60271 1321 aaKnown RBP12.37□□□□□ -0.43
COL4A6-208ENST00000538570 SMC4Q9NTJ3 1288 aa12.37□□□□□ -0.43
COL4A6-208ENST00000538570 HDAC5Q9UQL6 1122 aa12.37□□□□□ -0.43
COL4A6-208ENST00000538570 CCDC88BA6NC98 1476 aa12.36□□□□□ -0.43
COL4A6-208ENST00000538570 ZNF330Q9Y3S2 320 aaPredicted RBP12.36□□□□□ -0.43
COL4A6-208ENST00000538570 RASSF8Q8NHQ8 419 aa12.36□□□□□ -0.43
COL4A6-208ENST00000538570 PATL2C9JE40 543 aaKnown RBP12.36□□□□□ -0.43
COL4A6-208ENST00000538570 EIF4G1Q04637 1599 aaKnown RBP12.36□□□□□ -0.43
COL4A6-208ENST00000538570 TPM3P06753 285 aa12.36□□□□□ -0.43
COL4A6-208ENST00000538570 PKD2Q13563 968 aa12.35□□□□□ -0.43
COL4A6-208ENST00000538570 ARHGAP35Q9NRY4 1499 aa12.35□□□□□ -0.43
COL4A6-208ENST00000538570 MLECQ14165 292 aa12.35□□□□□ -0.43
COL4A6-208ENST00000538570 SMARCA2P51531 1590 aa12.35□□□□□ -0.43
COL4A6-208ENST00000538570 PRM3Q9NNZ6 103 aa12.35□□□□□ -0.43
COL4A6-208ENST00000538570 PAK3O75914 559 aaPredicted RBP12.35□□□□□ -0.43
COL4A6-208ENST00000538570 TAF7LQ5H9L4 462 aa12.34□□□□□ -0.43
COL4A6-208ENST00000538570 CHMP3Q9Y3E7 222 aa12.34□□□□□ -0.43
COL4A6-208ENST00000538570 CSB-PGBD3P0DP91 1061 aa12.34□□□□□ -0.43
COL4A6-208ENST00000538570 FOXD4L1Q9NU39 408 aa12.34□□□□□ -0.43
COL4A6-208ENST00000538570 ST18O60284 1047 aa12.34□□□□□ -0.43
COL4A6-208ENST00000538570 CREBRFQ8IUR6 639 aa12.34□□□□□ -0.43
COL4A6-208ENST00000538570 UBE2Q2Q8WVN8 375 aa12.34□□□□□ -0.43
COL4A6-208ENST00000538570 TMX4Q9H1E5 349 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms