RNA–Protein interactions for RNA: ENST00000538492.5

RAB40C-204, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RAB40C, Length 2,569 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-204ENST00000538492 MPHOSPH9Q99550 1183 aa35.34■■■■□ 3.25
RAB40C-204ENST00000538492 ABCC5O15440 1437 aa35.33■■■■□ 3.25
RAB40C-204ENST00000538492 DNMT1P26358 1616 aaKnown RBP35.33■■■■□ 3.25
RAB40C-204ENST00000538492 NUP160Q12769 1436 aa35.3■■■■□ 3.24
RAB40C-204ENST00000538492 TROQ12816 1431 aaPredicted RBP35.3■■■■□ 3.24
RAB40C-204ENST00000538492 CARMIL2Q6F5E8 1435 aa35.3■■■■□ 3.24
RAB40C-204ENST00000538492 FOXD1Q16676 465 aa35.29■■■■□ 3.24
RAB40C-204ENST00000538492 ROCK1Q13464 1354 aa35.27■■■■□ 3.24
RAB40C-204ENST00000538492 CFDP1Q9UEE9 299 aaPredicted RBP35.23■■■■□ 3.23
RAB40C-204ENST00000538492 KIF14Q15058 1648 aa35.22■■■■□ 3.23
RAB40C-204ENST00000538492 CAMSAP2Q08AD1 1489 aa35.19■■■■□ 3.22
RAB40C-204ENST00000538492 ZNF777Q9ULD5 760 aaPredicted RBP35.19■■■■□ 3.22
RAB40C-204ENST00000538492 GPATCH8Q9UKJ3 1502 aaKnown RBP35.16■■■■□ 3.22
RAB40C-204ENST00000538492 ITSN2Q9NZM3 1697 aa35.16■■■■□ 3.22
RAB40C-204ENST00000538492 ANP32CO43423 234 aa35.15■■■■□ 3.22
RAB40C-204ENST00000538492 ADCY10Q96PN6 1610 aa35.12■■■■□ 3.21
RAB40C-204ENST00000538492 L3MBTL2Q969R5 705 aa35.11■■■■□ 3.21
RAB40C-204ENST00000538492 SLC4A1APQ9BWU0 796 aaKnown RBP35.09■■■■□ 3.21
RAB40C-204ENST00000538492 ANKRD30BQ9BXX2 1392 aa35.07■■■■□ 3.2
RAB40C-204ENST00000538492 HSPA5P11021 654 aaKnown RBP35.06■■■■□ 3.2
RAB40C-204ENST00000538492 ABCA8O94911 1581 aa35.05■■■■□ 3.2
RAB40C-204ENST00000538492 PLEKHD1A6NEE1 506 aa35.05■■■■□ 3.2
RAB40C-204ENST00000538492 NCOA1Q15788 1441 aa35.03■■■■□ 3.2
RAB40C-204ENST00000538492 CCER2I3L3R5 266 aa35.02■■■■□ 3.2
RAB40C-204ENST00000538492 SUPT16HQ9Y5B9 1047 aaKnown RBP35.01■■■■□ 3.19
RAB40C-204ENST00000538492 ATP10BO94823 1461 aa35.01■■■■□ 3.19
RAB40C-204ENST00000538492 ADGBQ8N7X0 1667 aa35.01■■■■□ 3.19
RAB40C-204ENST00000538492 RPRD2Q5VT52 1461 aaKnown RBP35■■■■□ 3.19
RAB40C-204ENST00000538492 CROCC2H7BZ55 1655 aa34.97■■■■□ 3.19
RAB40C-204ENST00000538492 EIF4G2P78344 907 aaKnown RBP eCLIP34.97■■■■□ 3.191e-6■■■■□ 25.9
RAB40C-204ENST00000538492 CDC42BPAQ5VT25 1732 aa34.96■■■■□ 3.19
RAB40C-204ENST00000538492 WASHC2AQ641Q2 1341 aa34.95■■■■□ 3.19
RAB40C-204ENST00000538492 PZPP20742 1482 aa34.94■■■■□ 3.18
RAB40C-204ENST00000538492 ADGRL2O95490 1459 aa34.92■■■■□ 3.18
RAB40C-204ENST00000538492 ABCC10Q5T3U5 1492 aa34.91■■■■□ 3.18
RAB40C-204ENST00000538492 TEX14Q8IWB6 1497 aa34.91■■■■□ 3.18
RAB40C-204ENST00000538492 ANKRD30AQ9BXX3 1397 aa34.9■■■■□ 3.18
RAB40C-204ENST00000538492 NBPF8Q3BBV2 869 aa34.9■■■■□ 3.18
RAB40C-204ENST00000538492 PTPRGP23470 1445 aa34.87■■■■□ 3.17
RAB40C-204ENST00000538492 CHD1O14646 1710 aa34.82■■■■□ 3.16
RAB40C-204ENST00000538492 ANKRD50Q9ULJ7 1429 aa34.82■■■■□ 3.16
RAB40C-204ENST00000538492 PKD2Q13563 968 aa34.78■■■■□ 3.16
RAB40C-204ENST00000538492 C9orf84Q5VXU9 1444 aa34.78■■■■□ 3.16
RAB40C-204ENST00000538492 C11orf95C9JLR9 678 aaPredicted RBP34.78■■■■□ 3.16
RAB40C-204ENST00000538492 KIAA1107Q9UPP5 1409 aa34.77■■■■□ 3.16
RAB40C-204ENST00000538492 HNRNPMP52272 730 aaKnown RBP eCLIP34.75■■■■□ 3.15
RAB40C-204ENST00000538492 TSPY4P0CV99 314 aa34.73■■■■□ 3.15
RAB40C-204ENST00000538492 TSPY10P0CW01 314 aa34.73■■■■□ 3.15
RAB40C-204ENST00000538492 SHANK2Q9UPX8 1470 aa34.73■■■■□ 3.15
RAB40C-204ENST00000538492 CCDC7Q96M83 1385 aa34.69■■■■□ 3.14
RAB40C-204ENST00000538492 CNTLNQ9NXG0 1405 aa34.68■■■■□ 3.14
RAB40C-204ENST00000538492 NUP155O75694 1391 aa34.68■■■■□ 3.14
RAB40C-204ENST00000538492 ZNF326Q5BKZ1 582 aaKnown RBP34.65■■■■□ 3.14
RAB40C-204ENST00000538492 SPATA31E1Q6ZUB1 1445 aa34.64■■■■□ 3.14
RAB40C-204ENST00000538492 CDC42BPBQ9Y5S2 1711 aa34.63■■■■□ 3.13
RAB40C-204ENST00000538492 KIF15Q9NS87 1388 aa34.62■■■■□ 3.13
RAB40C-204ENST00000538492 MBD5Q9P267 1494 aa34.62■■■■□ 3.13
RAB40C-204ENST00000538492 SAMD9LQ8IVG5 1584 aa34.61■■■■□ 3.13
RAB40C-204ENST00000538492 ARHGEF5Q12774 1597 aa34.6■■■■□ 3.13
RAB40C-204ENST00000538492 FKBP8Q14318 412 aa34.59■■■■□ 3.13
RAB40C-204ENST00000538492 SHROOM2Q13796 1616 aa34.59■■■■□ 3.13
RAB40C-204ENST00000538492 PREX2Q70Z35 1606 aa34.59■■■■□ 3.13
RAB40C-204ENST00000538492 KIF7Q2M1P5 1343 aa34.57■■■■□ 3.12
RAB40C-204ENST00000538492 ERCC6L2Q5T890 1561 aa34.57■■■■□ 3.12
RAB40C-204ENST00000538492 BCANQ96GW7 911 aa34.56■■■■□ 3.12
RAB40C-204ENST00000538492 CCDC141Q6ZP82 1450 aa34.54■■■■□ 3.12
RAB40C-204ENST00000538492 HNRNPUQ00839 825 aaKnown RBP eCLIP34.54■■■■□ 3.12
RAB40C-204ENST00000538492 POLR1AO95602 1720 aaPredicted RBP34.51■■■■□ 3.12
RAB40C-204ENST00000538492 TTC37Q6PGP7 1564 aa34.51■■■■□ 3.11
RAB40C-204ENST00000538492 CCDC184Q52MB2 194 aa34.5■■■■□ 3.11
RAB40C-204ENST00000538492 KDM5DQ9BY66 1539 aa34.5■■■■□ 3.11
RAB40C-204ENST00000538492 PRKRIP1Q9H875 184 aaPredicted RBP34.49■■■■□ 3.11
RAB40C-204ENST00000538492 ARHGAP5Q13017 1502 aa34.47■■■■□ 3.11
RAB40C-204ENST00000538492 USP47Q96K76 1375 aa34.47■■■■□ 3.11
RAB40C-204ENST00000538492 SYCP2Q9BX26 1530 aa34.46■■■■□ 3.11
RAB40C-204ENST00000538492 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.46■■■■□ 3.112e-6■■■□□ 16.1
RAB40C-204ENST00000538492 ABCC2Q92887 1545 aa34.44■■■■□ 3.1
RAB40C-204ENST00000538492 NEFLP07196 543 aa34.44■■■■□ 3.1
RAB40C-204ENST00000538492 RSPH4AQ5TD94 716 aa34.43■■■■□ 3.1
RAB40C-204ENST00000538492 POLR3GLQ9BT43 218 aa34.4■■■■□ 3.1
RAB40C-204ENST00000538492 KDM2AQ9Y2K7 1162 aa34.39■■■■□ 3.1
RAB40C-204ENST00000538492 BCORL1Q5H9F3 1711 aa34.39■■■■□ 3.1
RAB40C-204ENST00000538492 FAM135AQ9P2D6 1515 aa34.37■■■■□ 3.09
RAB40C-204ENST00000538492 KDM5CP41229 1560 aa34.37■■■■□ 3.09
RAB40C-204ENST00000538492 UHRF1BP1Q6BDS2 1440 aa34.36■■■■□ 3.09
RAB40C-204ENST00000538492 MYO5CQ9NQX4 1742 aa34.35■■■■□ 3.09
RAB40C-204ENST00000538492 MRS2Q9HD23 443 aa34.35■■■■□ 3.09
RAB40C-204ENST00000538492 ARHGEF12Q9NZN5 1544 aa34.34■■■■□ 3.09
RAB40C-204ENST00000538492 FAM9BQ8IZU0 186 aa34.33■■■■□ 3.09
RAB40C-204ENST00000538492 DCAF11Q8TEB1 546 aa34.33■■■■□ 3.09
RAB40C-204ENST00000538492 RALGAPBQ86X10 1494 aa34.33■■■■□ 3.09
RAB40C-204ENST00000538492 CARD11Q9BXL7 1154 aa34.32■■■■□ 3.08
RAB40C-204ENST00000538492 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.3■■■■□ 3.08
RAB40C-204ENST00000538492 CNGB1Q14028 1251 aaPredicted RBP34.29■■■■□ 3.08
RAB40C-204ENST00000538492 MAST1Q9Y2H9 1570 aa34.28■■■■□ 3.08
RAB40C-204ENST00000538492 ZCCHC11Q5TAX3 1644 aaKnown RBP34.25■■■■□ 3.07
RAB40C-204ENST00000538492 CLASP1Q7Z460 1538 aa34.24■■■■□ 3.07
RAB40C-204ENST00000538492 TSHZ2Q9NRE2 1034 aa34.23■■■■□ 3.07
RAB40C-204ENST00000538492 DHX29Q7Z478 1369 aaKnown RBP34.22■■■■□ 3.07
RAB40C-204ENST00000538492 PLEKHH2Q8IVE3 1493 aa34.22■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms