RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 MAGI2Q86UL8 1455 aa23.41■■□□□ 1.34
SMARCA4-206ENST00000538456 SCAPERQ9BY12 1400 aa23.4■■□□□ 1.34
SMARCA4-206ENST00000538456 MYO5CQ9NQX4 1742 aa23.39■■□□□ 1.33
SMARCA4-206ENST00000538456 ATP1B4Q9UN42 357 aaPredicted RBP23.38■■□□□ 1.33
SMARCA4-206ENST00000538456 PLCH2O75038 1416 aa23.38■■□□□ 1.33
SMARCA4-206ENST00000538456 KIF14Q15058 1648 aa23.33■■□□□ 1.32
SMARCA4-206ENST00000538456 UBTFP17480 764 aaKnown RBP23.32■■□□□ 1.32
SMARCA4-206ENST00000538456 FMN1Q68DA7 1419 aa23.32■■□□□ 1.32
SMARCA4-206ENST00000538456 ATP10AO60312 1499 aa23.3■■□□□ 1.32
SMARCA4-206ENST00000538456 C9orf84Q5VXU9 1444 aa23.3■■□□□ 1.32
SMARCA4-206ENST00000538456 ARHGEF12Q9NZN5 1544 aa23.29■■□□□ 1.32
SMARCA4-206ENST00000538456 ARHGAP35Q9NRY4 1499 aa23.29■■□□□ 1.32
SMARCA4-206ENST00000538456 EFCAB2Q5VUJ9 269 aa23.28■■□□□ 1.32
SMARCA4-206ENST00000538456 PREX1Q8TCU6 1659 aa23.27■■□□□ 1.32
SMARCA4-206ENST00000538456 ARHGAP5Q13017 1502 aa23.26■■□□□ 1.31
SMARCA4-206ENST00000538456 CDK11AQ9UQ88 783 aaPredicted RBP23.25■■□□□ 1.31
SMARCA4-206ENST00000538456 LRRIQ1Q96JM4 1722 aa23.25■■□□□ 1.31
SMARCA4-206ENST00000538456 ZNF518AQ6AHZ1 1483 aa23.24■■□□□ 1.31
SMARCA4-206ENST00000538456 CEBPAP49715 358 aaPredicted RBP23.22■■□□□ 1.31
SMARCA4-206ENST00000538456 CERKQ8TCT0 537 aa23.22■■□□□ 1.31
SMARCA4-206ENST00000538456 TROQ12816 1431 aaPredicted RBP23.22■■□□□ 1.31
SMARCA4-206ENST00000538456 KDM5CP41229 1560 aa23.22■■□□□ 1.31
SMARCA4-206ENST00000538456 CLIP1P30622 1438 aa23.2■■□□□ 1.3
SMARCA4-206ENST00000538456 AFAP1Q8N556 730 aa23.2■■□□□ 1.3
SMARCA4-206ENST00000538456 MYT1LQ9UL68 1186 aa23.2■■□□□ 1.3
SMARCA4-206ENST00000538456 DIP2CQ9Y2E4 1556 aa23.18■■□□□ 1.3
SMARCA4-206ENST00000538456 CDC42BPBQ9Y5S2 1711 aa23.18■■□□□ 1.3
SMARCA4-206ENST00000538456 ABCA6Q8N139 1617 aa23.15■■□□□ 1.3
SMARCA4-206ENST00000538456 STRCQ7RTU9 1775 aa23.14■■□□□ 1.3
SMARCA4-206ENST00000538456 PREX2Q70Z35 1606 aa23.13■■□□□ 1.29
SMARCA4-206ENST00000538456 UHRF1BP1Q6BDS2 1440 aa23.12■■□□□ 1.29
SMARCA4-206ENST00000538456 REREQ9P2R6 1566 aa23.1■■□□□ 1.29
SMARCA4-206ENST00000538456 C3P01024 1663 aa23.1■■□□□ 1.29
SMARCA4-206ENST00000538456 ABCC1P33527 1531 aa23.1■■□□□ 1.29
SMARCA4-206ENST00000538456 ITSN2Q9NZM3 1697 aa23.09■■□□□ 1.29
SMARCA4-206ENST00000538456 SETD1BQ9UPS6 1966 aaKnown RBP23.09■■□□□ 1.29
SMARCA4-206ENST00000538456 MLH3Q9UHC1 1453 aa23.08■■□□□ 1.29
SMARCA4-206ENST00000538456 TRAPPC8Q9Y2L5 1435 aa23.08■■□□□ 1.28
SMARCA4-206ENST00000538456 CCDC18Q5T9S5 1454 aa23.05■■□□□ 1.28
SMARCA4-206ENST00000538456 CDC42BPAQ5VT25 1732 aa23.05■■□□□ 1.28
SMARCA4-206ENST00000538456 CHIC1Q5VXU3 224 aa23.04■■□□□ 1.28
SMARCA4-206ENST00000538456 DMRT2Q9Y5R5 561 aa23.04■■□□□ 1.28
SMARCA4-206ENST00000538456 CASKIN1Q8WXD9 1431 aa23.03■■□□□ 1.28
SMARCA4-206ENST00000538456 ESF1Q9H501 851 aaKnown RBP23.03■■□□□ 1.28
SMARCA4-206ENST00000538456 KIDINS220Q9ULH0 1771 aa23.03■■□□□ 1.28
SMARCA4-206ENST00000538456 AGLP35573 1532 aa23.03■■□□□ 1.28
SMARCA4-206ENST00000538456 SAMD9LQ8IVG5 1584 aa22.96■■□□□ 1.27
SMARCA4-206ENST00000538456 PTPRTO14522 1441 aa22.95■■□□□ 1.26
SMARCA4-206ENST00000538456 FYCO1Q9BQS8 1478 aa22.95■■□□□ 1.26
SMARCA4-206ENST00000538456 ZNF777Q9ULD5 760 aaPredicted RBP22.95■■□□□ 1.26
SMARCA4-206ENST00000538456 SYCP2Q9BX26 1530 aa22.94■■□□□ 1.26
SMARCA4-206ENST00000538456 CNTLNQ9NXG0 1405 aa22.94■■□□□ 1.26
SMARCA4-206ENST00000538456 SUPT6HQ7KZ85 1726 aaKnown RBP22.93■■□□□ 1.26
SMARCA4-206ENST00000538456 DISP3Q9P2K9 1392 aa22.92■■□□□ 1.26
SMARCA4-206ENST00000538456 MROH2AA6NES4 1674 aa22.9■■□□□ 1.26
SMARCA4-206ENST00000538456 NCOA1Q15788 1441 aa22.9■■□□□ 1.26
SMARCA4-206ENST00000538456 LTBP4Q8N2S1 1624 aa22.88■■□□□ 1.25
SMARCA4-206ENST00000538456 GPATCH8Q9UKJ3 1502 aaKnown RBP22.87■■□□□ 1.25
SMARCA4-206ENST00000538456 SPAG9O60271 1321 aaKnown RBP22.87■■□□□ 1.25
SMARCA4-206ENST00000538456 CAMSAP1Q5T5Y3 1602 aa22.87■■□□□ 1.25
SMARCA4-206ENST00000538456 ATP7AQ04656 1500 aa22.87■■□□□ 1.25
SMARCA4-206ENST00000538456 CLTCQ00610 1675 aaKnown RBP22.87■■□□□ 1.25
SMARCA4-206ENST00000538456 HNRNPMP52272 730 aaKnown RBP eCLIP22.86■■□□□ 1.25
SMARCA4-206ENST00000538456 NPATQ14207 1427 aa22.85■■□□□ 1.25
SMARCA4-206ENST00000538456 ILDR2Q71H61 639 aa22.84■■□□□ 1.25
SMARCA4-206ENST00000538456 INO80Q9ULG1 1556 aaPredicted RBP22.84■■□□□ 1.25
SMARCA4-206ENST00000538456 ZMYM3Q14202 1370 aa22.83■■□□□ 1.25
SMARCA4-206ENST00000538456 PLXNC1O60486 1568 aa22.82■■□□□ 1.24
SMARCA4-206ENST00000538456 SPATA31D1Q6ZQQ2 1576 aa22.82■■□□□ 1.24
SMARCA4-206ENST00000538456 MYO3AQ8NEV4 1616 aa22.82■■□□□ 1.24
SMARCA4-206ENST00000538456 CFDP1Q9UEE9 299 aaPredicted RBP22.8■■□□□ 1.24
SMARCA4-206ENST00000538456 A2MP01023 1474 aa22.79■■□□□ 1.24
SMARCA4-206ENST00000538456 PLEKHH2Q8IVE3 1493 aa22.79■■□□□ 1.24
SMARCA4-206ENST00000538456 CCNB3Q8WWL7 1395 aa22.79■■□□□ 1.24
SMARCA4-206ENST00000538456 ZNF142P52746 1687 aaPredicted RBP22.79■■□□□ 1.24
SMARCA4-206ENST00000538456 IQSEC2Q5JU85 1478 aa22.79■■□□□ 1.24
SMARCA4-206ENST00000538456 KIAA1107Q9UPP5 1409 aa22.78■■□□□ 1.24
SMARCA4-206ENST00000538456 NCKAP5LQ9HCH0 1330 aa22.78■■□□□ 1.24
SMARCA4-206ENST00000538456 CEP170BQ9Y4F5 1589 aaPredicted RBP22.76■■□□□ 1.23
SMARCA4-206ENST00000538456 ADGBQ8N7X0 1667 aa22.75■■□□□ 1.23
SMARCA4-206ENST00000538456 GGT6Q6P531 493 aa22.75■■□□□ 1.23
SMARCA4-206ENST00000538456 MTUS2Q5JR59 1369 aa22.75■■□□□ 1.23
SMARCA4-206ENST00000538456 ZNF335Q9H4Z2 1342 aaPredicted RBP22.74■■□□□ 1.23
SMARCA4-206ENST00000538456 PTPRKQ15262 1439 aa22.73■■□□□ 1.23
SMARCA4-206ENST00000538456 SOCS7O14512 581 aa22.72■■□□□ 1.23
SMARCA4-206ENST00000538456 TIAM1Q13009 1591 aa22.72■■□□□ 1.23
SMARCA4-206ENST00000538456 ZNF644Q9H582 1327 aaPredicted RBP22.7■■□□□ 1.22
SMARCA4-206ENST00000538456 PLA2R1Q13018 1463 aa22.7■■□□□ 1.22
SMARCA4-206ENST00000538456 TCOF1Q13428 1488 aaKnown RBP22.67■■□□□ 1.22
SMARCA4-206ENST00000538456 PKD2Q13563 968 aa22.66■■□□□ 1.22
SMARCA4-206ENST00000538456 EHBP1L1Q8N3D4 1523 aa22.66■■□□□ 1.22
SMARCA4-206ENST00000538456 UBAP1LF5GYI3 381 aa22.65■■□□□ 1.22
SMARCA4-206ENST00000538456 MBD5Q9P267 1494 aa22.64■■□□□ 1.21
SMARCA4-206ENST00000538456 DNMT1P26358 1616 aaKnown RBP22.62■■□□□ 1.21
SMARCA4-206ENST00000538456 A2ML1A8K2U0 1454 aa22.61■■□□□ 1.21
SMARCA4-206ENST00000538456 PPP6R1Q9UPN7 881 aa22.61■■□□□ 1.21
SMARCA4-206ENST00000538456 POLR1AO95602 1720 aaPredicted RBP22.6■■□□□ 1.21
SMARCA4-206ENST00000538456 RTEL1-TNFRSF6BF6WH68 1400 aa22.58■■□□□ 1.21
SMARCA4-206ENST00000538456 CEP162Q5TB80 1403 aa22.57■■□□□ 1.2
SMARCA4-206ENST00000538456 DHX29Q7Z478 1369 aaKnown RBP22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms