RNA–Protein interactions for RNA: ENST00000538239.5

LRP6-203, Transcript of LDL receptor related protein 6, humanhuman

TSL 1 (best)

Gene LRP6, Length 7,812 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP6-203ENST00000538239 VPS8Q8N3P4 1428 aa7□□□□□ -1.29
LRP6-203ENST00000538239 SETD5Q9C0A6 1442 aa7□□□□□ -1.29
LRP6-203ENST00000538239 ANP32BQ92688 251 aaKnown RBP7□□□□□ -1.29
LRP6-203ENST00000538239 FRAT1Q92837 279 aaPredicted RBP7□□□□□ -1.29
LRP6-203ENST00000538239 OS9Q13438 667 aaPredicted RBP6.99□□□□□ -1.29
LRP6-203ENST00000538239 NUTM2FA1L443 756 aa6.99□□□□□ -1.29
LRP6-203ENST00000538239 PNNQ9H307 717 aaKnown RBP6.99□□□□□ -1.29
LRP6-203ENST00000538239 TULP1O00294 542 aaPredicted RBP6.99□□□□□ -1.29
LRP6-203ENST00000538239 ROCK2O75116 1388 aaKnown RBP6.99□□□□□ -1.29
LRP6-203ENST00000538239 PTPRGP23470 1445 aa6.99□□□□□ -1.29
LRP6-203ENST00000538239 ZNF330Q9Y3S2 320 aaPredicted RBP6.99□□□□□ -1.29
LRP6-203ENST00000538239 CCDC18Q5T9S5 1454 aa6.98□□□□□ -1.29
LRP6-203ENST00000538239 FAM69CQ0P6D2 419 aa6.98□□□□□ -1.29
LRP6-203ENST00000538239 PRDM2Q13029 1718 aa6.98□□□□□ -1.29
LRP6-203ENST00000538239 GOLGA2Q08379 1002 aa6.98□□□□□ -1.29
LRP6-203ENST00000538239 RTF1Q92541 710 aaKnown RBP6.98□□□□□ -1.29
LRP6-203ENST00000538239 MPHOSPH9Q99550 1183 aa6.98□□□□□ -1.29
LRP6-203ENST00000538239 RAD54L2Q9Y4B4 1467 aa6.97□□□□□ -1.29
LRP6-203ENST00000538239 TPRNQ4KMQ1 711 aa6.96□□□□□ -1.29
LRP6-203ENST00000538239 CASC1Q6TDU7 716 aa6.96□□□□□ -1.3
LRP6-203ENST00000538239 NGDNQ8NEJ9 315 aaKnown RBP6.96□□□□□ -1.3
LRP6-203ENST00000538239 GAPVD1Q14C86 1478 aa6.96□□□□□ -1.3
LRP6-203ENST00000538239 FGD5Q6ZNL6 1462 aa6.96□□□□□ -1.3
LRP6-203ENST00000538239 HSPA5P11021 654 aaKnown RBP6.96□□□□□ -1.3
LRP6-203ENST00000538239 AQRO60306 1485 aaKnown RBP eCLIP6.95□□□□□ -1.31e-6■■■■□ 26.1
LRP6-203ENST00000538239 LTV1Q96GA3 475 aaPredicted RBP6.94□□□□□ -1.3
LRP6-203ENST00000538239 RAB3GAP2Q9H2M9 1393 aa6.93□□□□□ -1.3
LRP6-203ENST00000538239 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.93□□□□□ -1.32e-6■■■■□ 22.4
LRP6-203ENST00000538239 RUSC2Q8N2Y8 1516 aa6.93□□□□□ -1.3
LRP6-203ENST00000538239 NBR1Q14596 966 aa6.93□□□□□ -1.3
LRP6-203ENST00000538239 EIF3AQ14152 1382 aaKnown RBP6.93□□□□□ -1.3
LRP6-203ENST00000538239 SUPT16HQ9Y5B9 1047 aaKnown RBP6.93□□□□□ -1.3
LRP6-203ENST00000538239 CDK11BP21127 795 aaKnown RBP6.93□□□□□ -1.3
LRP6-203ENST00000538239 TRAK1Q9UPV9 953 aa6.93□□□□□ -1.3
LRP6-203ENST00000538239 CC2D2AQ9P2K1 1620 aa6.92□□□□□ -1.3
LRP6-203ENST00000538239 RSPH4AQ5TD94 716 aa6.92□□□□□ -1.3
LRP6-203ENST00000538239 NAP1L2Q9ULW6 460 aaPredicted RBP6.92□□□□□ -1.3
LRP6-203ENST00000538239 MEX3CQ5U5Q3 659 aaKnown RBP6.92□□□□□ -1.3
LRP6-203ENST00000538239 U2AF1L5P0DN76 240 aaPredicted RBP6.91□□□□□ -1.3
LRP6-203ENST00000538239 U2AF1Q01081 240 aaKnown RBP eCLIP6.91□□□□□ -1.3
LRP6-203ENST00000538239 KTN1Q86UP2 1357 aaKnown RBP6.91□□□□□ -1.3
LRP6-203ENST00000538239 AMPHP49418 695 aa6.91□□□□□ -1.3
LRP6-203ENST00000538239 ISY1Q9ULR0 285 aaKnown RBP6.91□□□□□ -1.3
LRP6-203ENST00000538239 RGS3P49796 1198 aa6.9□□□□□ -1.3
LRP6-203ENST00000538239 NESP48681 1621 aa6.9□□□□□ -1.3
LRP6-203ENST00000538239 NCLP19338 710 aaKnown RBP6.9□□□□□ -1.3
LRP6-203ENST00000538239 KCNJ4P48050 445 aa6.9□□□□□ -1.3
LRP6-203ENST00000538239 TERF2IPQ9NYB0 399 aa6.9□□□□□ -1.31
LRP6-203ENST00000538239 EVA1CP58658 441 aa6.9□□□□□ -1.31
LRP6-203ENST00000538239 FGD1P98174 961 aa6.89□□□□□ -1.31
LRP6-203ENST00000538239 BECN1Q14457 450 aa6.89□□□□□ -1.31
LRP6-203ENST00000538239 APBB1O00213 710 aa6.89□□□□□ -1.31
LRP6-203ENST00000538239 TMX4Q9H1E5 349 aaPredicted RBP6.89□□□□□ -1.31
LRP6-203ENST00000538239 CHMP4BQ9H444 224 aaKnown RBP6.89□□□□□ -1.31
LRP6-203ENST00000538239 MS4A1P11836 297 aa6.88□□□□□ -1.31
LRP6-203ENST00000538239 CHMP3Q9Y3E7 222 aa6.88□□□□□ -1.31
LRP6-203ENST00000538239 CCDC144AA2RUR9 1427 aa6.87□□□□□ -1.31
LRP6-203ENST00000538239 MRC2Q9UBG0 1479 aa6.87□□□□□ -1.31
LRP6-203ENST00000538239 L3MBTL2Q969R5 705 aa6.87□□□□□ -1.31
LRP6-203ENST00000538239 MINK1Q8N4C8 1332 aaPredicted RBP6.87□□□□□ -1.31
LRP6-203ENST00000538239 MSH5O43196 834 aa6.86□□□□□ -1.31
LRP6-203ENST00000538239 CCDC146Q8IYE0 955 aa6.86□□□□□ -1.31
LRP6-203ENST00000538239 NCAPD3P42695 1498 aa6.86□□□□□ -1.31
LRP6-203ENST00000538239 ZRSR1Q15695 479 aaKnown RBP6.86□□□□□ -1.31
LRP6-203ENST00000538239 DDRGK1Q96HY6 314 aa6.86□□□□□ -1.31
LRP6-203ENST00000538239 G3V3G9 751 aa6.85□□□□□ -1.31
LRP6-203ENST00000538239 DCAF8Q5TAQ9 597 aa6.85□□□□□ -1.31
LRP6-203ENST00000538239 TIMELESSQ9UNS1 1208 aa6.85□□□□□ -1.31
LRP6-203ENST00000538239 IGF1RP08069 1367 aa6.85□□□□□ -1.31
LRP6-203ENST00000538239 VGFO15240 615 aaPredicted RBP6.85□□□□□ -1.31
LRP6-203ENST00000538239 UACAQ9BZF9 1416 aa6.85□□□□□ -1.31
LRP6-203ENST00000538239 ARHGAP5Q13017 1502 aa6.85□□□□□ -1.31
LRP6-203ENST00000538239 TAF7LQ5H9L4 462 aa6.85□□□□□ -1.31
LRP6-203ENST00000538239 GRIN2BQ13224 1484 aa6.85□□□□□ -1.31
LRP6-203ENST00000538239 CALD1Q05682 793 aaKnown RBP6.85□□□□□ -1.31
LRP6-203ENST00000538239 PHF23Q9BUL5 403 aaPredicted RBP6.85□□□□□ -1.31
LRP6-203ENST00000538239 PRG4Q92954 1404 aaPredicted RBP6.84□□□□□ -1.31
LRP6-203ENST00000538239 PSME1Q06323 249 aa6.84□□□□□ -1.31
LRP6-203ENST00000538239 GOLGA6L22H0YM25 854 aa6.84□□□□□ -1.31
LRP6-203ENST00000538239 ITPRIPQ8IWB1 547 aa6.84□□□□□ -1.31
LRP6-203ENST00000538239 STK31Q9BXU1 1019 aa6.84□□□□□ -1.31
LRP6-203ENST00000538239 ZNF644Q9H582 1327 aaPredicted RBP6.83□□□□□ -1.32
LRP6-203ENST00000538239 COG3Q96JB2 828 aa6.83□□□□□ -1.32
LRP6-203ENST00000538239 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.83□□□□□ -1.32
LRP6-203ENST00000538239 EIF5BO60841 1220 aaKnown RBP6.83□□□□□ -1.32
LRP6-203ENST00000538239 ATF3P18847 181 aa6.83□□□□□ -1.32
LRP6-203ENST00000538239 GTF2E1P29083 439 aaPredicted RBP6.83□□□□□ -1.32
LRP6-203ENST00000538239 SLC4A10Q6U841 1118 aa6.83□□□□□ -1.32
LRP6-203ENST00000538239 RALBP1Q15311 655 aa6.83□□□□□ -1.32
LRP6-203ENST00000538239 HSP90AB1P08238 724 aaKnown RBP6.83□□□□□ -1.32
LRP6-203ENST00000538239 GORABQ5T7V8 394 aa6.82□□□□□ -1.32
LRP6-203ENST00000538239 SYTL4Q96C24 671 aaPredicted RBP6.82□□□□□ -1.32
LRP6-203ENST00000538239 IPO8O15397 1037 aaKnown RBP6.82□□□□□ -1.32
LRP6-203ENST00000538239 C1orf141Q5JVX7 400 aa6.82□□□□□ -1.32
LRP6-203ENST00000538239 B4GALNT3Q6L9W6 998 aa6.82□□□□□ -1.32
LRP6-203ENST00000538239 CLSTN1O94985 981 aa6.82□□□□□ -1.32
LRP6-203ENST00000538239 EVC2Q86UK5 1308 aa6.82□□□□□ -1.32
LRP6-203ENST00000538239 SNAPC4Q5SXM2 1469 aa6.82□□□□□ -1.32
LRP6-203ENST00000538239 IFT140Q96RY7 1462 aa6.82□□□□□ -1.32
LRP6-203ENST00000538239 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms