RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 THOC2Q8NI27 1593 aaKnown RBP14.27□□□□□ -0.12
RTN3-208ENST00000537981 MRC2Q9UBG0 1479 aa14.27□□□□□ -0.12
RTN3-208ENST00000537981 URB2Q14146 1524 aaKnown RBP14.25□□□□□ -0.13
RTN3-208ENST00000537981 HSP90AA2PQ14568 343 aaPredicted RBP14.24□□□□□ -0.13
RTN3-208ENST00000537981 PRKRIP1Q9H875 184 aaPredicted RBP14.24□□□□□ -0.13
RTN3-208ENST00000537981 ARID4BQ4LE39 1312 aaPredicted RBP14.24□□□□□ -0.13
RTN3-208ENST00000537981 RNF123Q5XPI4 1314 aa14.24□□□□□ -0.13
RTN3-208ENST00000537981 FAM50AQ14320 339 aaKnown RBP14.23□□□□□ -0.13
RTN3-208ENST00000537981 EXOC6Q8TAG9 804 aa14.23□□□□□ -0.13
RTN3-208ENST00000537981 NAP1L5Q96NT1 182 aaPredicted RBP14.23□□□□□ -0.13
RTN3-208ENST00000537981 TONSLQ96HA7 1378 aa14.22□□□□□ -0.13
RTN3-208ENST00000537981 HSPA5P11021 654 aaKnown RBP14.22□□□□□ -0.13
RTN3-208ENST00000537981 SMG6Q86US8 1419 aaKnown RBP14.22□□□□□ -0.13
RTN3-208ENST00000537981 NUDCQ9Y266 331 aa14.21□□□□□ -0.13
RTN3-208ENST00000537981 RBM10P98175 930 aaKnown RBP14.2□□□□□ -0.14
RTN3-208ENST00000537981 POGKQ9P215 609 aa14.19□□□□□ -0.14
RTN3-208ENST00000537981 PRDM2Q13029 1718 aa14.19□□□□□ -0.14
RTN3-208ENST00000537981 WDR62O43379 1518 aa14.19□□□□□ -0.14
RTN3-208ENST00000537981 KDM5BQ9UGL1 1544 aa14.18□□□□□ -0.14
RTN3-208ENST00000537981 TCERG1O14776 1098 aaKnown RBP14.17□□□□□ -0.14
RTN3-208ENST00000537981 PDIA4P13667 645 aaKnown RBP14.17□□□□□ -0.14
RTN3-208ENST00000537981 CNTLNQ9NXG0 1405 aa14.17□□□□□ -0.14
RTN3-208ENST00000537981 PHLDB1Q86UU1 1377 aa14.17□□□□□ -0.14
RTN3-208ENST00000537981 TOPBP1Q92547 1522 aa14.16□□□□□ -0.14
RTN3-208ENST00000537981 CHMP4AQ9BY43 222 aa14.16□□□□□ -0.14
RTN3-208ENST00000537981 HSP90AA1P07900 732 aaKnown RBP14.13□□□□□ -0.15
RTN3-208ENST00000537981 NCOA2Q15596 1464 aa14.13□□□□□ -0.15
RTN3-208ENST00000537981 RRP9O43818 475 aaKnown RBP14.13□□□□□ -0.15
RTN3-208ENST00000537981 AAMPQ13685 434 aa14.13□□□□□ -0.15
RTN3-208ENST00000537981 FHAD1B1AJZ9 1412 aa14.13□□□□□ -0.15
RTN3-208ENST00000537981 CUX1P39880 1505 aa14.11□□□□□ -0.15
RTN3-208ENST00000537981 RAD54L2Q9Y4B4 1467 aa14.1□□□□□ -0.15
RTN3-208ENST00000537981 IGSF3O75054 1194 aa14.1□□□□□ -0.15
RTN3-208ENST00000537981 DNMBPQ6XZF7 1577 aa14.09□□□□□ -0.15
RTN3-208ENST00000537981 PANK2Q9BZ23 570 aa14.09□□□□□ -0.15
RTN3-208ENST00000537981 RGS3P49796 1198 aa14.08□□□□□ -0.15
RTN3-208ENST00000537981 DDRGK1Q96HY6 314 aa14.08□□□□□ -0.15
RTN3-208ENST00000537981 PNNQ9H307 717 aaKnown RBP14.08□□□□□ -0.15
RTN3-208ENST00000537981 POLA1P09884 1462 aaPredicted RBP14.08□□□□□ -0.16
RTN3-208ENST00000537981 PPP4R3CPQ6ZMV5 832 aa14.07□□□□□ -0.16
RTN3-208ENST00000537981 ARHGAP35Q9NRY4 1499 aa14.07□□□□□ -0.16
RTN3-208ENST00000537981 ZNF608Q9ULD9 1512 aaPredicted RBP14.07□□□□□ -0.16
RTN3-208ENST00000537981 RRP1P56182 461 aaKnown RBP14.07□□□□□ -0.16
RTN3-208ENST00000537981 FGD5Q6ZNL6 1462 aa14.07□□□□□ -0.16
RTN3-208ENST00000537981 FGD1P98174 961 aa14.06□□□□□ -0.16
RTN3-208ENST00000537981 FOXD4L1Q9NU39 408 aa14.06□□□□□ -0.16
RTN3-208ENST00000537981 PRDM4Q9UKN5 801 aa14.06□□□□□ -0.16
RTN3-208ENST00000537981 PLIN1O60240 522 aa14.06□□□□□ -0.16
RTN3-208ENST00000537981 MS4A1P11836 297 aa14.06□□□□□ -0.16
RTN3-208ENST00000537981 AQRO60306 1485 aaKnown RBP eCLIP14.05□□□□□ -0.162e-7■■■■□ 19.7
RTN3-208ENST00000537981 SAMD1Q6SPF0 538 aaPredicted RBP14.05□□□□□ -0.16
RTN3-208ENST00000537981 CCDC7Q96M83 1385 aa14.05□□□□□ -0.16
RTN3-208ENST00000537981 TDRD9Q8NDG6 1382 aaKnown RBP14.05□□□□□ -0.16
RTN3-208ENST00000537981 PAXIP1Q6ZW49 1069 aaPredicted RBP14.04□□□□□ -0.16
RTN3-208ENST00000537981 TIAM1Q13009 1591 aa14.02□□□□□ -0.16
RTN3-208ENST00000537981 CFAP44Q96MT7 982 aa14.02□□□□□ -0.17
RTN3-208ENST00000537981 XRCC6P12956 609 aaKnown RBP eCLIP14.01□□□□□ -0.17
RTN3-208ENST00000537981 EIF4G2P78344 907 aaKnown RBP eCLIP14.01□□□□□ -0.17
RTN3-208ENST00000537981 PDE4CQ08493 712 aa14.01□□□□□ -0.17
RTN3-208ENST00000537981 ERBB4Q15303 1308 aa14□□□□□ -0.17
RTN3-208ENST00000537981 PRXQ9BXM0 1461 aa14□□□□□ -0.17
RTN3-208ENST00000537981 CLCN1P35523 988 aa14□□□□□ -0.17
RTN3-208ENST00000537981 NCOA1Q15788 1441 aa14□□□□□ -0.17
RTN3-208ENST00000537981 IFT140Q96RY7 1462 aa14□□□□□ -0.17
RTN3-208ENST00000537981 ERICH3Q5RHP9 1530 aa13.99□□□□□ -0.17
RTN3-208ENST00000537981 KIF7Q2M1P5 1343 aa13.98□□□□□ -0.17
RTN3-208ENST00000537981 CDK11BP21127 795 aaKnown RBP13.98□□□□□ -0.17
RTN3-208ENST00000537981 CCDC18Q5T9S5 1454 aa13.98□□□□□ -0.17
RTN3-208ENST00000537981 LRRC9Q6ZRR7 1453 aa13.98□□□□□ -0.17
RTN3-208ENST00000537981 C8orf34Q49A92 452 aa13.98□□□□□ -0.17
RTN3-208ENST00000537981 POLR3GLQ9BT43 218 aa13.96□□□□□ -0.17
RTN3-208ENST00000537981 SLKQ9H2G2 1235 aaPredicted RBP13.96□□□□□ -0.17
RTN3-208ENST00000537981 RCAN3Q9UKA8 241 aa13.96□□□□□ -0.17
RTN3-208ENST00000537981 MAP3K1Q13233 1512 aa13.96□□□□□ -0.17
RTN3-208ENST00000537981 GZF1Q9H116 711 aaPredicted RBP13.96□□□□□ -0.18
RTN3-208ENST00000537981 DHX37Q8IY37 1157 aaKnown RBP13.95□□□□□ -0.18
RTN3-208ENST00000537981 CRBNQ96SW2 442 aa13.95□□□□□ -0.18
RTN3-208ENST00000537981 TOP2BQ02880 1626 aa13.95□□□□□ -0.18
RTN3-208ENST00000537981 TARBP1Q13395 1621 aaKnown RBP13.95□□□□□ -0.18
RTN3-208ENST00000537981 PTPRKQ15262 1439 aa13.95□□□□□ -0.18
RTN3-208ENST00000537981 C20orf194Q5TEA3 1177 aa13.94□□□□□ -0.18
RTN3-208ENST00000537981 CNKSR2Q8WXI2 1034 aa13.94□□□□□ -0.18
RTN3-208ENST00000537981 BCL11BQ9C0K0 894 aaPredicted RBP13.94□□□□□ -0.18
RTN3-208ENST00000537981 PNISRQ8TF01 805 aaKnown RBP13.93□□□□□ -0.18
RTN3-208ENST00000537981 CDCA7LQ96GN5 454 aa13.93□□□□□ -0.18
RTN3-208ENST00000537981 DHX29Q7Z478 1369 aaKnown RBP13.93□□□□□ -0.18
RTN3-208ENST00000537981 ATP1B4Q9UN42 357 aaPredicted RBP13.93□□□□□ -0.18
RTN3-208ENST00000537981 ARID3AQ99856 593 aa13.92□□□□□ -0.18
RTN3-208ENST00000537981 FOXD1Q16676 465 aa13.91□□□□□ -0.18
RTN3-208ENST00000537981 EIF4G3O43432 1585 aaKnown RBP13.91□□□□□ -0.18
RTN3-208ENST00000537981 TRHP20396 242 aaPredicted RBP13.91□□□□□ -0.18
RTN3-208ENST00000537981 NBPF8Q3BBV2 869 aa13.91□□□□□ -0.18
RTN3-208ENST00000537981 UACAQ9BZF9 1416 aa13.91□□□□□ -0.18
RTN3-208ENST00000537981 BIVM-ERCC5R4GMW8 1640 aa13.9□□□□□ -0.18
RTN3-208ENST00000537981 L3MBTL2Q969R5 705 aa13.9□□□□□ -0.18
RTN3-208ENST00000537981 CALD1Q05682 793 aaKnown RBP13.89□□□□□ -0.19
RTN3-208ENST00000537981 L1TD1Q5T7N2 865 aaKnown RBP13.89□□□□□ -0.19
RTN3-208ENST00000537981 DENND4BO75064 1496 aaPredicted RBP13.88□□□□□ -0.19
RTN3-208ENST00000537981 P3H3Q8IVL6 736 aa13.88□□□□□ -0.19
RTN3-208ENST00000537981 ZHX1Q9UKY1 873 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms