RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 RAPGEF6Q8TEU7 1601 aa16.09■□□□□ 0.17
SYNE1-234ENST00000536990 RBM19Q9Y4C8 960 aaKnown RBP16.08■□□□□ 0.17
SYNE1-234ENST00000536990 DAPK1P53355 1430 aa16.08■□□□□ 0.16
SYNE1-234ENST00000536990 ROCK1Q13464 1354 aa16.07■□□□□ 0.16
SYNE1-234ENST00000536990 HNRNPUQ00839 825 aaKnown RBP eCLIP16.05■□□□□ 0.16
SYNE1-234ENST00000536990 CHMP7Q8WUX9 453 aaPredicted RBP16.05■□□□□ 0.16
SYNE1-234ENST00000536990 DNMT1P26358 1616 aaKnown RBP16.05■□□□□ 0.16
SYNE1-234ENST00000536990 ERCC6Q03468 1493 aa16.05■□□□□ 0.16
SYNE1-234ENST00000536990 ABCC5O15440 1437 aa16.05■□□□□ 0.16
SYNE1-234ENST00000536990 ZNF644Q9H582 1327 aaPredicted RBP16.04■□□□□ 0.16
SYNE1-234ENST00000536990 MAGI1Q96QZ7 1491 aaPredicted RBP16.04■□□□□ 0.16
SYNE1-234ENST00000536990 EIF4G2P78344 907 aaKnown RBP eCLIP16.03■□□□□ 0.16
SYNE1-234ENST00000536990 FOXD1Q16676 465 aa16.03■□□□□ 0.16
SYNE1-234ENST00000536990 CNTLNQ9NXG0 1405 aa16.02■□□□□ 0.16
SYNE1-234ENST00000536990 L3MBTL2Q969R5 705 aa16.02■□□□□ 0.15
SYNE1-234ENST00000536990 TROQ12816 1431 aaPredicted RBP16.01■□□□□ 0.15
SYNE1-234ENST00000536990 SYNJ2O15056 1496 aa16■□□□□ 0.15
SYNE1-234ENST00000536990 FBLN2P98095 1184 aa16■□□□□ 0.15
SYNE1-234ENST00000536990 NCOA1Q15788 1441 aa16■□□□□ 0.15
SYNE1-234ENST00000536990 PRG4Q92954 1404 aaPredicted RBP16■□□□□ 0.15
SYNE1-234ENST00000536990 CEP170Q5SW79 1584 aa15.99■□□□□ 0.15
SYNE1-234ENST00000536990 ANKRD30BQ9BXX2 1392 aa15.99■□□□□ 0.15
SYNE1-234ENST00000536990 CFDP1Q9UEE9 299 aaPredicted RBP15.98■□□□□ 0.15
SYNE1-234ENST00000536990 SLC4A1APQ9BWU0 796 aaKnown RBP15.98■□□□□ 0.15
SYNE1-234ENST00000536990 PLB1Q6P1J6 1458 aa15.98■□□□□ 0.15
SYNE1-234ENST00000536990 C11orf95C9JLR9 678 aaPredicted RBP15.97■□□□□ 0.15
SYNE1-234ENST00000536990 CCDC7Q96M83 1385 aa15.97■□□□□ 0.15
SYNE1-234ENST00000536990 CARMIL2Q6F5E8 1435 aa15.97■□□□□ 0.15
SYNE1-234ENST00000536990 CCDC184Q52MB2 194 aa15.97■□□□□ 0.15
SYNE1-234ENST00000536990 RPRD2Q5VT52 1461 aaKnown RBP15.97■□□□□ 0.15
SYNE1-234ENST00000536990 ITSN2Q9NZM3 1697 aa15.96■□□□□ 0.15
SYNE1-234ENST00000536990 JPH4Q96JJ6 628 aa15.96■□□□□ 0.15
SYNE1-234ENST00000536990 CAMSAP2Q08AD1 1489 aa15.95■□□□□ 0.14
SYNE1-234ENST00000536990 TEX14Q8IWB6 1497 aa15.95■□□□□ 0.14
SYNE1-234ENST00000536990 PRKRIP1Q9H875 184 aaPredicted RBP15.94■□□□□ 0.14
SYNE1-234ENST00000536990 GPATCH8Q9UKJ3 1502 aaKnown RBP15.94■□□□□ 0.14
SYNE1-234ENST00000536990 IRX6P78412 446 aaPredicted RBP15.93■□□□□ 0.14
SYNE1-234ENST00000536990 NBPF8Q3BBV2 869 aa15.93■□□□□ 0.14
SYNE1-234ENST00000536990 ZNF777Q9ULD5 760 aaPredicted RBP15.93■□□□□ 0.14
SYNE1-234ENST00000536990 ERICH6BQ5W0A0 696 aa15.92■□□□□ 0.14
SYNE1-234ENST00000536990 NUP160Q12769 1436 aa15.92■□□□□ 0.14
SYNE1-234ENST00000536990 SPATA31E1Q6ZUB1 1445 aa15.92■□□□□ 0.14
SYNE1-234ENST00000536990 ADCY10Q96PN6 1610 aa15.92■□□□□ 0.14
SYNE1-234ENST00000536990 POLR1AO95602 1720 aaPredicted RBP15.92■□□□□ 0.14
SYNE1-234ENST00000536990 KIF14Q15058 1648 aa15.92■□□□□ 0.14
SYNE1-234ENST00000536990 ADGBQ8N7X0 1667 aa15.91■□□□□ 0.14
SYNE1-234ENST00000536990 MSH5O43196 834 aa15.89■□□□□ 0.13
SYNE1-234ENST00000536990 PZPP20742 1482 aa15.89■□□□□ 0.13
SYNE1-234ENST00000536990 PLEKHD1A6NEE1 506 aa15.88■□□□□ 0.13
SYNE1-234ENST00000536990 ADGRL2O95490 1459 aa15.88■□□□□ 0.13
SYNE1-234ENST00000536990 ANKRD30AQ9BXX3 1397 aa15.87■□□□□ 0.13
SYNE1-234ENST00000536990 KIF7Q2M1P5 1343 aa15.87■□□□□ 0.13
SYNE1-234ENST00000536990 FANCIQ9NVI1 1328 aa15.87■□□□□ 0.13
SYNE1-234ENST00000536990 ZBED9Q6R2W3 1325 aa15.87■□□□□ 0.13
SYNE1-234ENST00000536990 CROCC2H7BZ55 1655 aa15.86■□□□□ 0.13
SYNE1-234ENST00000536990 MRS2Q9HD23 443 aa15.86■□□□□ 0.13
SYNE1-234ENST00000536990 PPP4R2Q9NY27 417 aa15.86■□□□□ 0.13
SYNE1-234ENST00000536990 FAM9BQ8IZU0 186 aa15.85■□□□□ 0.13
SYNE1-234ENST00000536990 KIAA1107Q9UPP5 1409 aa15.84■□□□□ 0.13
SYNE1-234ENST00000536990 ABCA8O94911 1581 aa15.84■□□□□ 0.13
SYNE1-234ENST00000536990 ATP10BO94823 1461 aa15.83■□□□□ 0.12
SYNE1-234ENST00000536990 MBD5Q9P267 1494 aa15.82■□□□□ 0.12
SYNE1-234ENST00000536990 CDC42BPAQ5VT25 1732 aa15.82■□□□□ 0.12
SYNE1-234ENST00000536990 PKD2Q13563 968 aa15.82■□□□□ 0.12
SYNE1-234ENST00000536990 ANKRD50Q9ULJ7 1429 aa15.82■□□□□ 0.12
SYNE1-234ENST00000536990 ABCC10Q5T3U5 1492 aa15.8■□□□□ 0.12
SYNE1-234ENST00000536990 DHX29Q7Z478 1369 aaKnown RBP15.79■□□□□ 0.12
SYNE1-234ENST00000536990 TSPY4P0CV99 314 aa15.78■□□□□ 0.12
SYNE1-234ENST00000536990 TSPY10P0CW01 314 aa15.78■□□□□ 0.12
SYNE1-234ENST00000536990 SHANK2Q9UPX8 1470 aa15.78■□□□□ 0.12
SYNE1-234ENST00000536990 C9orf84Q5VXU9 1444 aa15.78■□□□□ 0.12
SYNE1-234ENST00000536990 BCORL1Q5H9F3 1711 aa15.78■□□□□ 0.12
SYNE1-234ENST00000536990 NUP155O75694 1391 aa15.76■□□□□ 0.11
SYNE1-234ENST00000536990 ZNF326Q5BKZ1 582 aaKnown RBP15.76■□□□□ 0.11
SYNE1-234ENST00000536990 PTPRGP23470 1445 aa15.75■□□□□ 0.11
SYNE1-234ENST00000536990 B4GALNT3Q6L9W6 998 aa15.74■□□□□ 0.11
SYNE1-234ENST00000536990 USP47Q96K76 1375 aa15.74■□□□□ 0.11
SYNE1-234ENST00000536990 HNRNPMP52272 730 aaKnown RBP eCLIP15.73■□□□□ 0.11
SYNE1-234ENST00000536990 SMG6Q86US8 1419 aaKnown RBP15.73■□□□□ 0.11
SYNE1-234ENST00000536990 KDM5CP41229 1560 aa15.73■□□□□ 0.11
SYNE1-234ENST00000536990 KIF15Q9NS87 1388 aa15.71■□□□□ 0.11
SYNE1-234ENST00000536990 ARHGEF5Q12774 1597 aa15.7■□□□□ 0.1
SYNE1-234ENST00000536990 ARID4BQ4LE39 1312 aaPredicted RBP15.7■□□□□ 0.1
SYNE1-234ENST00000536990 BCL11AQ9H165 835 aa15.7■□□□□ 0.1
SYNE1-234ENST00000536990 KDM5DQ9BY66 1539 aa15.7■□□□□ 0.1
SYNE1-234ENST00000536990 UHRF1BP1Q6BDS2 1440 aa15.69■□□□□ 0.1
SYNE1-234ENST00000536990 POLR3GLQ9BT43 218 aa15.69■□□□□ 0.1
SYNE1-234ENST00000536990 RNF123Q5XPI4 1314 aa15.69■□□□□ 0.1
SYNE1-234ENST00000536990 RALGAPBQ86X10 1494 aa15.67■□□□□ 0.1
SYNE1-234ENST00000536990 RSPH4AQ5TD94 716 aa15.67■□□□□ 0.1
SYNE1-234ENST00000536990 NUDCQ9Y266 331 aa15.67■□□□□ 0.1
SYNE1-234ENST00000536990 CCDC141Q6ZP82 1450 aa15.66■□□□□ 0.1
SYNE1-234ENST00000536990 CDC42BPBQ9Y5S2 1711 aa15.66■□□□□ 0.1
SYNE1-234ENST00000536990 ARHGEF12Q9NZN5 1544 aa15.66■□□□□ 0.1
SYNE1-234ENST00000536990 CARD11Q9BXL7 1154 aa15.65■□□□□ 0.1
SYNE1-234ENST00000536990 PREX2Q70Z35 1606 aa15.65■□□□□ 0.1
SYNE1-234ENST00000536990 SAMD9LQ8IVG5 1584 aa15.65■□□□□ 0.1
SYNE1-234ENST00000536990 KDM2AQ9Y2K7 1162 aa15.65■□□□□ 0.1
SYNE1-234ENST00000536990 ERICH6Q7L0X2 663 aa15.64■□□□□ 0.09
SYNE1-234ENST00000536990 ROCK2O75116 1388 aaKnown RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms