RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 ZNF644Q9H582 1327 aaPredicted RBP18.54■□□□□ 0.56
LDLR-203ENST00000535915 ROCK1Q13464 1354 aa18.54■□□□□ 0.56
LDLR-203ENST00000535915 CCER2I3L3R5 266 aa18.53■□□□□ 0.56
LDLR-203ENST00000535915 FBLN2P98095 1184 aa18.53■□□□□ 0.56
LDLR-203ENST00000535915 ABCC5O15440 1437 aa18.53■□□□□ 0.56
LDLR-203ENST00000535915 ITSN2Q9NZM3 1697 aa18.51■□□□□ 0.55
LDLR-203ENST00000535915 PLB1Q6P1J6 1458 aa18.5■□□□□ 0.55
LDLR-203ENST00000535915 PRG4Q92954 1404 aaPredicted RBP18.5■□□□□ 0.55
LDLR-203ENST00000535915 FOXD1Q16676 465 aa18.5■□□□□ 0.55
LDLR-203ENST00000535915 TROQ12816 1431 aaPredicted RBP18.5■□□□□ 0.55
LDLR-203ENST00000535915 CARMIL2Q6F5E8 1435 aa18.47■□□□□ 0.55
LDLR-203ENST00000535915 CAMSAP2Q08AD1 1489 aa18.46■□□□□ 0.55
LDLR-203ENST00000535915 KIF14Q15058 1648 aa18.46■□□□□ 0.55
LDLR-203ENST00000535915 ADCY10Q96PN6 1610 aa18.46■□□□□ 0.55
LDLR-203ENST00000535915 HSPA5P11021 654 aaKnown RBP18.46■□□□□ 0.55
LDLR-203ENST00000535915 CFDP1Q9UEE9 299 aaPredicted RBP18.46■□□□□ 0.55
LDLR-203ENST00000535915 ADGBQ8N7X0 1667 aa18.45■□□□□ 0.54
LDLR-203ENST00000535915 L3MBTL2Q969R5 705 aa18.45■□□□□ 0.54
LDLR-203ENST00000535915 JPH4Q96JJ6 628 aa18.45■□□□□ 0.54
LDLR-203ENST00000535915 NUP160Q12769 1436 aa18.44■□□□□ 0.54
LDLR-203ENST00000535915 ANKRD30BQ9BXX2 1392 aa18.43■□□□□ 0.54
LDLR-203ENST00000535915 EIF4G2P78344 907 aaKnown RBP eCLIP18.43■□□□□ 0.54
LDLR-203ENST00000535915 SLC4A1APQ9BWU0 796 aaKnown RBP18.43■□□□□ 0.54
LDLR-203ENST00000535915 GPATCH8Q9UKJ3 1502 aaKnown RBP18.43■□□□□ 0.54
LDLR-203ENST00000535915 RPRD2Q5VT52 1461 aaKnown RBP18.42■□□□□ 0.54
LDLR-203ENST00000535915 ZNF777Q9ULD5 760 aaPredicted RBP18.42■□□□□ 0.54
LDLR-203ENST00000535915 CROCC2H7BZ55 1655 aa18.41■□□□□ 0.54
LDLR-203ENST00000535915 WASHC2AQ641Q2 1341 aa18.41■□□□□ 0.54
LDLR-203ENST00000535915 NCOA1Q15788 1441 aa18.38■□□□□ 0.53
LDLR-203ENST00000535915 CDC42BPAQ5VT25 1732 aa18.37■□□□□ 0.53
LDLR-203ENST00000535915 TEX14Q8IWB6 1497 aa18.37■□□□□ 0.53
LDLR-203ENST00000535915 ABCA8O94911 1581 aa18.36■□□□□ 0.53
LDLR-203ENST00000535915 PZPP20742 1482 aa18.35■□□□□ 0.53
LDLR-203ENST00000535915 PLEKHD1A6NEE1 506 aa18.34■□□□□ 0.53
LDLR-203ENST00000535915 ADGRL2O95490 1459 aa18.34■□□□□ 0.53
LDLR-203ENST00000535915 NBPF8Q3BBV2 869 aa18.33■□□□□ 0.53
LDLR-203ENST00000535915 FKBP8Q14318 412 aa18.33■□□□□ 0.52
LDLR-203ENST00000535915 ANKRD30AQ9BXX3 1397 aa18.32■□□□□ 0.52
LDLR-203ENST00000535915 CNTLNQ9NXG0 1405 aa18.31■□□□□ 0.52
LDLR-203ENST00000535915 ATP10BO94823 1461 aa18.31■□□□□ 0.52
LDLR-203ENST00000535915 POLR1AO95602 1720 aaPredicted RBP18.3■□□□□ 0.52
LDLR-203ENST00000535915 BCANQ96GW7 911 aa18.3■□□□□ 0.52
LDLR-203ENST00000535915 NEFLP07196 543 aa18.29■□□□□ 0.52
LDLR-203ENST00000535915 CCDC7Q96M83 1385 aa18.29■□□□□ 0.52
LDLR-203ENST00000535915 C11orf95C9JLR9 678 aaPredicted RBP18.28■□□□□ 0.52
LDLR-203ENST00000535915 ABCC10Q5T3U5 1492 aa18.28■□□□□ 0.52
LDLR-203ENST00000535915 KIAA1107Q9UPP5 1409 aa18.28■□□□□ 0.52
LDLR-203ENST00000535915 ANKRD50Q9ULJ7 1429 aa18.27■□□□□ 0.52
LDLR-203ENST00000535915 HNRNPUQ00839 825 aaKnown RBP eCLIP18.25■□□□□ 0.51
LDLR-203ENST00000535915 PKD2Q13563 968 aa18.25■□□□□ 0.51
LDLR-203ENST00000535915 SHANK2Q9UPX8 1470 aa18.24■□□□□ 0.51
LDLR-203ENST00000535915 C9orf84Q5VXU9 1444 aa18.24■□□□□ 0.51
LDLR-203ENST00000535915 SPATA31E1Q6ZUB1 1445 aa18.24■□□□□ 0.51
LDLR-203ENST00000535915 PTPRGP23470 1445 aa18.22■□□□□ 0.51
LDLR-203ENST00000535915 TSPY4P0CV99 314 aa18.21■□□□□ 0.51
LDLR-203ENST00000535915 TSPY10P0CW01 314 aa18.21■□□□□ 0.51
LDLR-203ENST00000535915 MBD5Q9P267 1494 aa18.21■□□□□ 0.51
LDLR-203ENST00000535915 CHD1O14646 1710 aa18.21■□□□□ 0.51
LDLR-203ENST00000535915 KIF7Q2M1P5 1343 aa18.2■□□□□ 0.5
LDLR-203ENST00000535915 NUP155O75694 1391 aa18.2■□□□□ 0.5
LDLR-203ENST00000535915 ZNF326Q5BKZ1 582 aaKnown RBP18.19■□□□□ 0.5
LDLR-203ENST00000535915 PRKRIP1Q9H875 184 aaPredicted RBP18.19■□□□□ 0.5
LDLR-203ENST00000535915 TSHZ2Q9NRE2 1034 aa18.19■□□□□ 0.5
LDLR-203ENST00000535915 CDC42BPBQ9Y5S2 1711 aa18.18■□□□□ 0.5
LDLR-203ENST00000535915 ARHGEF5Q12774 1597 aa18.18■□□□□ 0.5
LDLR-203ENST00000535915 HNRNPMP52272 730 aaKnown RBP eCLIP18.18■□□□□ 0.5
LDLR-203ENST00000535915 CCDC184Q52MB2 194 aa18.17■□□□□ 0.5
LDLR-203ENST00000535915 PREX2Q70Z35 1606 aa18.16■□□□□ 0.5
LDLR-203ENST00000535915 KIF15Q9NS87 1388 aa18.15■□□□□ 0.5
LDLR-203ENST00000535915 SAMD9LQ8IVG5 1584 aa18.14■□□□□ 0.5
LDLR-203ENST00000535915 KDM5DQ9BY66 1539 aa18.14■□□□□ 0.49
LDLR-203ENST00000535915 USP47Q96K76 1375 aa18.14■□□□□ 0.49
LDLR-203ENST00000535915 BCL11AQ9H165 835 aa18.14■□□□□ 0.49
LDLR-203ENST00000535915 BCORL1Q5H9F3 1711 aa18.13■□□□□ 0.49
LDLR-203ENST00000535915 MRS2Q9HD23 443 aa18.13■□□□□ 0.49
LDLR-203ENST00000535915 KDM5CP41229 1560 aa18.12■□□□□ 0.49
LDLR-203ENST00000535915 CCDC141Q6ZP82 1450 aa18.12■□□□□ 0.49
LDLR-203ENST00000535915 FAM9BQ8IZU0 186 aa18.11■□□□□ 0.49
LDLR-203ENST00000535915 POLR3GLQ9BT43 218 aa18.09■□□□□ 0.49
LDLR-203ENST00000535915 SHROOM2Q13796 1616 aa18.09■□□□□ 0.49
LDLR-203ENST00000535915 ARHGEF12Q9NZN5 1544 aa18.09■□□□□ 0.49
LDLR-203ENST00000535915 UHRF1BP1Q6BDS2 1440 aa18.08■□□□□ 0.49
LDLR-203ENST00000535915 RALGAPBQ86X10 1494 aa18.07■□□□□ 0.48
LDLR-203ENST00000535915 TTC37Q6PGP7 1564 aa18.07■□□□□ 0.48
LDLR-203ENST00000535915 RSPH4AQ5TD94 716 aa18.07■□□□□ 0.48
LDLR-203ENST00000535915 ARHGAP5Q13017 1502 aa18.06■□□□□ 0.48
LDLR-203ENST00000535915 SYCP2Q9BX26 1530 aa18.06■□□□□ 0.48
LDLR-203ENST00000535915 ANP32EQ9BTT0 268 aa18.05■□□□□ 0.48
LDLR-203ENST00000535915 FAM135AQ9P2D6 1515 aa18.05■□□□□ 0.48
LDLR-203ENST00000535915 KDM2AQ9Y2K7 1162 aa18.05■□□□□ 0.48
LDLR-203ENST00000535915 MYO5CQ9NQX4 1742 aa18.05■□□□□ 0.48
LDLR-203ENST00000535915 CARD11Q9BXL7 1154 aa18.04■□□□□ 0.48
LDLR-203ENST00000535915 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.04■□□□□ 0.485e-12■□□□□ 9.5
LDLR-203ENST00000535915 ARID4BQ4LE39 1312 aaPredicted RBP18.03■□□□□ 0.48
LDLR-203ENST00000535915 DHX29Q7Z478 1369 aaKnown RBP18.03■□□□□ 0.48
LDLR-203ENST00000535915 CNGB1Q14028 1251 aaPredicted RBP18.02■□□□□ 0.48
LDLR-203ENST00000535915 DCAF11Q8TEB1 546 aa18.02■□□□□ 0.48
LDLR-203ENST00000535915 ERCC6L2Q5T890 1561 aa18.02■□□□□ 0.48
LDLR-203ENST00000535915 IRX6P78412 446 aaPredicted RBP18.02■□□□□ 0.47
LDLR-203ENST00000535915 ABCC2Q92887 1545 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms