RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 PREX1Q8TCU6 1659 aa26.22■■□□□ 1.79
CHMP4A-207ENST00000533523 ARHGEF12Q9NZN5 1544 aa26.22■■□□□ 1.79
CHMP4A-207ENST00000533523 POGZQ7Z3K3 1410 aa26.16■■□□□ 1.78
CHMP4A-207ENST00000533523 MYO5CQ9NQX4 1742 aa26.15■■□□□ 1.78
CHMP4A-207ENST00000533523 EHMT2Q96KQ7 1210 aa26.15■■□□□ 1.78
CHMP4A-207ENST00000533523 MAGI2Q86UL8 1455 aa26.14■■□□□ 1.78
CHMP4A-207ENST00000533523 MLECQ14165 292 aa26.11■■□□□ 1.77
CHMP4A-207ENST00000533523 FMN1Q68DA7 1419 aa26.07■■□□□ 1.76
CHMP4A-207ENST00000533523 SCAPERQ9BY12 1400 aa26.06■■□□□ 1.76
CHMP4A-207ENST00000533523 UBTFP17480 764 aaKnown RBP26.06■■□□□ 1.76
CHMP4A-207ENST00000533523 ATP1B4Q9UN42 357 aaPredicted RBP26.06■■□□□ 1.76
CHMP4A-207ENST00000533523 KIF14Q15058 1648 aa26.06■■□□□ 1.76
CHMP4A-207ENST00000533523 ARHGAP35Q9NRY4 1499 aa26.05■■□□□ 1.76
CHMP4A-207ENST00000533523 CEBPAP49715 358 aaPredicted RBP26.05■■□□□ 1.76
CHMP4A-207ENST00000533523 PLCH2O75038 1416 aa26.05■■□□□ 1.76
CHMP4A-207ENST00000533523 LRRIQ1Q96JM4 1722 aa26.04■■□□□ 1.76
CHMP4A-207ENST00000533523 ATP10AO60312 1499 aa26.04■■□□□ 1.76
CHMP4A-207ENST00000533523 DISP3Q9P2K9 1392 aa26.03■■□□□ 1.76
CHMP4A-207ENST00000533523 C9orf84Q5VXU9 1444 aa26.03■■□□□ 1.76
CHMP4A-207ENST00000533523 SPATA31D1Q6ZQQ2 1576 aa26.03■■□□□ 1.76
CHMP4A-207ENST00000533523 C3P01024 1663 aa26.02■■□□□ 1.76
CHMP4A-207ENST00000533523 KDM5CP41229 1560 aa26.01■■□□□ 1.75
CHMP4A-207ENST00000533523 DIP2CQ9Y2E4 1556 aa26■■□□□ 1.75
CHMP4A-207ENST00000533523 ABCA6Q8N139 1617 aa25.99■■□□□ 1.75
CHMP4A-207ENST00000533523 LTBP4Q8N2S1 1624 aa25.99■■□□□ 1.75
CHMP4A-207ENST00000533523 SOCS7O14512 581 aa25.98■■□□□ 1.75
CHMP4A-207ENST00000533523 ARHGAP5Q13017 1502 aa25.96■■□□□ 1.75
CHMP4A-207ENST00000533523 TROQ12816 1431 aaPredicted RBP25.94■■□□□ 1.74
CHMP4A-207ENST00000533523 CDK11AQ9UQ88 783 aaPredicted RBP25.93■■□□□ 1.74
CHMP4A-207ENST00000533523 CLIP1P30622 1438 aa25.93■■□□□ 1.74
CHMP4A-207ENST00000533523 SETD1BQ9UPS6 1966 aaKnown RBP25.92■■□□□ 1.74
CHMP4A-207ENST00000533523 REREQ9P2R6 1566 aa25.91■■□□□ 1.74
CHMP4A-207ENST00000533523 EFCAB2Q5VUJ9 269 aa25.91■■□□□ 1.74
CHMP4A-207ENST00000533523 CDC42BPBQ9Y5S2 1711 aa25.91■■□□□ 1.74
CHMP4A-207ENST00000533523 ZNF518AQ6AHZ1 1483 aa25.91■■□□□ 1.74
CHMP4A-207ENST00000533523 UHRF1BP1Q6BDS2 1440 aa25.88■■□□□ 1.73
CHMP4A-207ENST00000533523 CHIC1Q5VXU3 224 aa25.88■■□□□ 1.73
CHMP4A-207ENST00000533523 PREX2Q70Z35 1606 aa25.88■■□□□ 1.73
CHMP4A-207ENST00000533523 PTPRTO14522 1441 aa25.86■■□□□ 1.73
CHMP4A-207ENST00000533523 AFAP1Q8N556 730 aa25.83■■□□□ 1.73
CHMP4A-207ENST00000533523 ITSN2Q9NZM3 1697 aa25.83■■□□□ 1.73
CHMP4A-207ENST00000533523 CCDC18Q5T9S5 1454 aa25.82■■□□□ 1.72
CHMP4A-207ENST00000533523 KIDINS220Q9ULH0 1771 aa25.81■■□□□ 1.72
CHMP4A-207ENST00000533523 NCOA1Q15788 1441 aa25.8■■□□□ 1.72
CHMP4A-207ENST00000533523 ABCC1P33527 1531 aa25.79■■□□□ 1.72
CHMP4A-207ENST00000533523 MYT1LQ9UL68 1186 aa25.79■■□□□ 1.72
CHMP4A-207ENST00000533523 CDC42BPAQ5VT25 1732 aa25.79■■□□□ 1.72
CHMP4A-207ENST00000533523 AGLP35573 1532 aa25.78■■□□□ 1.72
CHMP4A-207ENST00000533523 CASKIN1Q8WXD9 1431 aa25.77■■□□□ 1.72
CHMP4A-207ENST00000533523 TRAPPC8Q9Y2L5 1435 aa25.77■■□□□ 1.72
CHMP4A-207ENST00000533523 MLH3Q9UHC1 1453 aa25.77■■□□□ 1.72
CHMP4A-207ENST00000533523 IQSEC2Q5JU85 1478 aa25.73■■□□□ 1.71
CHMP4A-207ENST00000533523 DMRT2Q9Y5R5 561 aa25.72■■□□□ 1.71
CHMP4A-207ENST00000533523 FYCO1Q9BQS8 1478 aa25.72■■□□□ 1.71
CHMP4A-207ENST00000533523 CAMSAP1Q5T5Y3 1602 aa25.71■■□□□ 1.71
CHMP4A-207ENST00000533523 MROH2AA6NES4 1674 aa25.7■■□□□ 1.7
CHMP4A-207ENST00000533523 ZNF142P52746 1687 aaPredicted RBP25.66■■□□□ 1.7
CHMP4A-207ENST00000533523 MYO3AQ8NEV4 1616 aa25.64■■□□□ 1.7
CHMP4A-207ENST00000533523 SAMD9LQ8IVG5 1584 aa25.64■■□□□ 1.69
CHMP4A-207ENST00000533523 SYCP2Q9BX26 1530 aa25.63■■□□□ 1.69
CHMP4A-207ENST00000533523 CLTCQ00610 1675 aaKnown RBP25.61■■□□□ 1.69
CHMP4A-207ENST00000533523 SUPT6HQ7KZ85 1726 aaKnown RBP25.6■■□□□ 1.69
CHMP4A-207ENST00000533523 ZNF335Q9H4Z2 1342 aaPredicted RBP25.6■■□□□ 1.69
CHMP4A-207ENST00000533523 ESF1Q9H501 851 aaKnown RBP25.58■■□□□ 1.69
CHMP4A-207ENST00000533523 PLXNC1O60486 1568 aa25.57■■□□□ 1.68
CHMP4A-207ENST00000533523 NPATQ14207 1427 aa25.56■■□□□ 1.68
CHMP4A-207ENST00000533523 ZNF777Q9ULD5 760 aaPredicted RBP25.56■■□□□ 1.68
CHMP4A-207ENST00000533523 CNTLNQ9NXG0 1405 aa25.55■■□□□ 1.68
CHMP4A-207ENST00000533523 NCKAP5LQ9HCH0 1330 aa25.55■■□□□ 1.68
CHMP4A-207ENST00000533523 TCOF1Q13428 1488 aaKnown RBP25.54■■□□□ 1.68
CHMP4A-207ENST00000533523 CEP170BQ9Y4F5 1589 aaPredicted RBP25.53■■□□□ 1.68
CHMP4A-207ENST00000533523 ATP7AQ04656 1500 aa25.53■■□□□ 1.68
CHMP4A-207ENST00000533523 GPATCH8Q9UKJ3 1502 aaKnown RBP25.53■■□□□ 1.68
CHMP4A-207ENST00000533523 INO80Q9ULG1 1556 aaPredicted RBP25.52■■□□□ 1.68
CHMP4A-207ENST00000533523 ZMYM3Q14202 1370 aa25.49■■□□□ 1.67
CHMP4A-207ENST00000533523 MED1Q15648 1581 aaPredicted RBP25.48■■□□□ 1.67
CHMP4A-207ENST00000533523 PLA2R1Q13018 1463 aa25.48■■□□□ 1.67
CHMP4A-207ENST00000533523 PTPRKQ15262 1439 aa25.48■■□□□ 1.67
CHMP4A-207ENST00000533523 PLEKHH2Q8IVE3 1493 aa25.47■■□□□ 1.67
CHMP4A-207ENST00000533523 SPAG9O60271 1321 aaKnown RBP25.47■■□□□ 1.67
CHMP4A-207ENST00000533523 ALKQ9UM73 1620 aa25.46■■□□□ 1.67
CHMP4A-207ENST00000533523 CCNB3Q8WWL7 1395 aa25.45■■□□□ 1.67
CHMP4A-207ENST00000533523 NEURL4Q96JN8 1562 aa25.45■■□□□ 1.66
CHMP4A-207ENST00000533523 MTUS2Q5JR59 1369 aa25.44■■□□□ 1.66
CHMP4A-207ENST00000533523 HNRNPMP52272 730 aaKnown RBP eCLIP25.44■■□□□ 1.66
CHMP4A-207ENST00000533523 TIAM1Q13009 1591 aa25.44■■□□□ 1.66
CHMP4A-207ENST00000533523 ADGBQ8N7X0 1667 aa25.43■■□□□ 1.66
CHMP4A-207ENST00000533523 UBAP1LF5GYI3 381 aa25.43■■□□□ 1.66
CHMP4A-207ENST00000533523 CFDP1Q9UEE9 299 aaPredicted RBP25.42■■□□□ 1.66
CHMP4A-207ENST00000533523 KIAA1107Q9UPP5 1409 aa25.42■■□□□ 1.66
CHMP4A-207ENST00000533523 DNMT1P26358 1616 aaKnown RBP25.41■■□□□ 1.66
CHMP4A-207ENST00000533523 EHBP1L1Q8N3D4 1523 aa25.41■■□□□ 1.66
CHMP4A-207ENST00000533523 A2MP01023 1474 aa25.4■■□□□ 1.66
CHMP4A-207ENST00000533523 POLR1AO95602 1720 aaPredicted RBP25.4■■□□□ 1.66
CHMP4A-207ENST00000533523 HSPA1LP34931 641 aa25.33■■□□□ 1.65
CHMP4A-207ENST00000533523 A2ML1A8K2U0 1454 aa25.31■■□□□ 1.64
CHMP4A-207ENST00000533523 VWDEQ8N2E2 1590 aa25.31■■□□□ 1.64
CHMP4A-207ENST00000533523 PKD2Q13563 968 aa25.3■■□□□ 1.64
CHMP4A-207ENST00000533523 STRCP1A6NGW2 1772 aa25.29■■□□□ 1.64
CHMP4A-207ENST00000533523 GGT6Q6P531 493 aa25.28■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms