RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 CFAP43Q8NDM7 1665 aa15.41■□□□□ 0.06
TRIM3-211ENST00000532542 PKD2Q13563 968 aa15.4■□□□□ 0.06
TRIM3-211ENST00000532542 KDM2AQ9Y2K7 1162 aa15.39■□□□□ 0.05
TRIM3-211ENST00000532542 SAMD9Q5K651 1589 aa15.39■□□□□ 0.05
TRIM3-211ENST00000532542 NUP155O75694 1391 aa15.38■□□□□ 0.05
TRIM3-211ENST00000532542 FOXD1Q16676 465 aa15.38■□□□□ 0.05
TRIM3-211ENST00000532542 PLB1Q6P1J6 1458 aa15.38■□□□□ 0.05
TRIM3-211ENST00000532542 OSCARQ8IYS5 282 aa15.37■□□□□ 0.05
TRIM3-211ENST00000532542 KIAA0556O60303 1618 aa15.35■□□□□ 0.05
TRIM3-211ENST00000532542 PTPN23Q9H3S7 1636 aa15.34■□□□□ 0.05
TRIM3-211ENST00000532542 NAIPQ13075 1403 aa15.33■□□□□ 0.04
TRIM3-211ENST00000532542 NUP160Q12769 1436 aa15.32■□□□□ 0.04
TRIM3-211ENST00000532542 RAPGEF6Q8TEU7 1601 aa15.32■□□□□ 0.04
TRIM3-211ENST00000532542 L3MBTL2Q969R5 705 aa15.31■□□□□ 0.04
TRIM3-211ENST00000532542 DAPK1P53355 1430 aa15.31■□□□□ 0.04
TRIM3-211ENST00000532542 RGL3Q3MIN7 710 aa15.31■□□□□ 0.04
TRIM3-211ENST00000532542 NUP153P49790 1475 aaKnown RBP15.3■□□□□ 0.04
TRIM3-211ENST00000532542 ROCK1Q13464 1354 aa15.3■□□□□ 0.04
TRIM3-211ENST00000532542 DISP1Q96F81 1524 aa15.29■□□□□ 0.04
TRIM3-211ENST00000532542 SPAG9O60271 1321 aaKnown RBP15.28■□□□□ 0.04
TRIM3-211ENST00000532542 CARD11Q9BXL7 1154 aa15.28■□□□□ 0.04
TRIM3-211ENST00000532542 ANKRD50Q9ULJ7 1429 aa15.28■□□□□ 0.04
TRIM3-211ENST00000532542 CHGAP10645 457 aaKnown RBP15.27■□□□□ 0.04
TRIM3-211ENST00000532542 KANK1Q14678 1352 aa15.27■□□□□ 0.04
TRIM3-211ENST00000532542 HSPA5P11021 654 aaKnown RBP15.27■□□□□ 0.03
TRIM3-211ENST00000532542 KIF15Q9NS87 1388 aa15.26■□□□□ 0.03
TRIM3-211ENST00000532542 DCAF11Q8TEB1 546 aa15.25■□□□□ 0.03
TRIM3-211ENST00000532542 AKNAQ7Z591 1439 aa15.23■□□□□ 0.03
TRIM3-211ENST00000532542 ARHGAP5Q13017 1502 aa15.23■□□□□ 0.03
TRIM3-211ENST00000532542 ABCC5O15440 1437 aa15.23■□□□□ 0.03
TRIM3-211ENST00000532542 KIF14Q15058 1648 aa15.23■□□□□ 0.03
TRIM3-211ENST00000532542 C9orf84Q5VXU9 1444 aa15.22■□□□□ 0.03
TRIM3-211ENST00000532542 CAMSAP2Q08AD1 1489 aa15.22■□□□□ 0.03
TRIM3-211ENST00000532542 PLEKHH2Q8IVE3 1493 aa15.21■□□□□ 0.03
TRIM3-211ENST00000532542 TCOF1Q13428 1488 aaKnown RBP15.21■□□□□ 0.03
TRIM3-211ENST00000532542 CEP170Q5SW79 1584 aa15.21■□□□□ 0.03
TRIM3-211ENST00000532542 ARHGEF11O15085 1522 aa15.2■□□□□ 0.02
TRIM3-211ENST00000532542 PTPRKQ15262 1439 aa15.2■□□□□ 0.02
TRIM3-211ENST00000532542 ATP10BO94823 1461 aa15.2■□□□□ 0.02
TRIM3-211ENST00000532542 ESF1Q9H501 851 aaKnown RBP15.2■□□□□ 0.02
TRIM3-211ENST00000532542 GPATCH8Q9UKJ3 1502 aaKnown RBP15.19■□□□□ 0.02
TRIM3-211ENST00000532542 SCAF1Q9H7N4 1312 aaKnown RBP15.19■□□□□ 0.02
TRIM3-211ENST00000532542 HNRNPUQ00839 825 aaKnown RBP eCLIP15.18■□□□□ 0.02
TRIM3-211ENST00000532542 MRS2Q9HD23 443 aa15.18■□□□□ 0.02
TRIM3-211ENST00000532542 CCER2I3L3R5 266 aa15.18■□□□□ 0.02
TRIM3-211ENST00000532542 KIF3BO15066 747 aa15.16■□□□□ 0.02
TRIM3-211ENST00000532542 FAM9BQ8IZU0 186 aa15.15■□□□□ 0.02
TRIM3-211ENST00000532542 CCDC144AA2RUR9 1427 aa15.15■□□□□ 0.02
TRIM3-211ENST00000532542 STAG3Q9UJ98 1225 aa15.15■□□□□ 0.02
TRIM3-211ENST00000532542 NCOA1Q15788 1441 aa15.15■□□□□ 0.02
TRIM3-211ENST00000532542 MAPKBP1O60336 1514 aa15.13■□□□□ 0.01
TRIM3-211ENST00000532542 ITSN2Q9NZM3 1697 aa15.13■□□□□ 0.01
TRIM3-211ENST00000532542 CCDC141Q6ZP82 1450 aa15.13■□□□□ 0.01
TRIM3-211ENST00000532542 TMC1Q8TDI8 760 aa15.13■□□□□ 0.01
TRIM3-211ENST00000532542 KIAA1107Q9UPP5 1409 aa15.13■□□□□ 0.01
TRIM3-211ENST00000532542 MAGI3Q5TCQ9 1506 aa15.12■□□□□ 0.01
TRIM3-211ENST00000532542 CDCA8Q53HL2 280 aa15.12■□□□□ 0.01
TRIM3-211ENST00000532542 ROCK2O75116 1388 aaKnown RBP15.1■□□□□ 0.01
TRIM3-211ENST00000532542 GGT6Q6P531 493 aa15.1■□□□□ 0.01
TRIM3-211ENST00000532542 AFAP1Q8N556 730 aa15.08■□□□□ 0
TRIM3-211ENST00000532542 CYB5RLQ6IPT4 315 aa15.08■□□□□ 0
TRIM3-211ENST00000532542 SLC24A1O60721 1099 aa15.07■□□□□ 0
TRIM3-211ENST00000532542 ANKRD30BQ9BXX2 1392 aa15.07■□□□□ 0
TRIM3-211ENST00000532542 TMF1P82094 1093 aa15.05■□□□□ 0
TRIM3-211ENST00000532542 BCANQ96GW7 911 aa15.04■□□□□ -0
TRIM3-211ENST00000532542 USP47Q96K76 1375 aa15.03■□□□□ -0
TRIM3-211ENST00000532542 ABCC2Q92887 1545 aa15.02■□□□□ -0
TRIM3-211ENST00000532542 DNMT1P26358 1616 aaKnown RBP15.02■□□□□ -0
TRIM3-211ENST00000532542 ABCA8O94911 1581 aa15.02□□□□□ -0.01
TRIM3-211ENST00000532542 FKBP8Q14318 412 aa15.01□□□□□ -0.01
TRIM3-211ENST00000532542 WASHC2CQ9Y4E1 1318 aa15□□□□□ -0.01
TRIM3-211ENST00000532542 PLCH2O75038 1416 aa14.99□□□□□ -0.01
TRIM3-211ENST00000532542 STAC3Q96MF2 364 aa14.99□□□□□ -0.01
TRIM3-211ENST00000532542 SHANK2Q9UPX8 1470 aa14.99□□□□□ -0.01
TRIM3-211ENST00000532542 RPRD2Q5VT52 1461 aaKnown RBP14.99□□□□□ -0.01
TRIM3-211ENST00000532542 KNSTRNQ9Y448 316 aa14.99□□□□□ -0.01
TRIM3-211ENST00000532542 ST20-MTHFSA0A0A6YYL1 179 aa14.98□□□□□ -0.01
TRIM3-211ENST00000532542 NBPF8Q3BBV2 869 aa14.98□□□□□ -0.01
TRIM3-211ENST00000532542 SCAPERQ9BY12 1400 aa14.98□□□□□ -0.01
TRIM3-211ENST00000532542 CCDC7Q96M83 1385 aa14.96□□□□□ -0.01
TRIM3-211ENST00000532542 ARID4BQ4LE39 1312 aaPredicted RBP14.96□□□□□ -0.01
TRIM3-211ENST00000532542 ADGRL2O95490 1459 aa14.95□□□□□ -0.02
TRIM3-211ENST00000532542 CHD1O14646 1710 aa14.95□□□□□ -0.02
TRIM3-211ENST00000532542 WASHC2AQ641Q2 1341 aa14.95□□□□□ -0.02
TRIM3-211ENST00000532542 EIF3AQ14152 1382 aaKnown RBP14.94□□□□□ -0.02
TRIM3-211ENST00000532542 WDR43Q15061 677 aaKnown RBP eCLIP14.93□□□□□ -0.02
TRIM3-211ENST00000532542 KIF7Q2M1P5 1343 aa14.93□□□□□ -0.02
TRIM3-211ENST00000532542 ABCC10Q5T3U5 1492 aa14.92□□□□□ -0.02
TRIM3-211ENST00000532542 SYCP2Q9BX26 1530 aa14.92□□□□□ -0.02
TRIM3-211ENST00000532542 FAM69CQ0P6D2 419 aa14.92□□□□□ -0.02
TRIM3-211ENST00000532542 GCC2Q8IWJ2 1684 aa14.92□□□□□ -0.02
TRIM3-211ENST00000532542 FANCAO15360 1455 aa14.92□□□□□ -0.02
TRIM3-211ENST00000532542 ADGRL1O94910 1474 aa14.92□□□□□ -0.02
TRIM3-211ENST00000532542 WDR7Q9Y4E6 1490 aa14.92□□□□□ -0.02
TRIM3-211ENST00000532542 RALBP1Q15311 655 aa14.91□□□□□ -0.02
TRIM3-211ENST00000532542 PRKRIP1Q9H875 184 aaPredicted RBP14.91□□□□□ -0.02
TRIM3-211ENST00000532542 CD109Q6YHK3 1445 aa14.91□□□□□ -0.02
TRIM3-211ENST00000532542 CNTLNQ9NXG0 1405 aa14.91□□□□□ -0.02
TRIM3-211ENST00000532542 KTN1Q86UP2 1357 aaKnown RBP14.9□□□□□ -0.02
TRIM3-211ENST00000532542 ASXL2Q76L83 1435 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms