RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 ZMYM4Q5VZL5 1548 aa14.5□□□□□ -0.09
CD44-232ENST00000531118 ATP10BO94823 1461 aa14.5□□□□□ -0.09
CD44-232ENST00000531118 CFAP74Q9C0B2 1584 aa14.49□□□□□ -0.09
CD44-232ENST00000531118 RAPGEF6Q8TEU7 1601 aa14.48□□□□□ -0.09
CD44-232ENST00000531118 SLC4A2P04920 1241 aa14.48□□□□□ -0.09
CD44-232ENST00000531118 EFCAB5A4FU69 1503 aa14.46□□□□□ -0.09
CD44-232ENST00000531118 ZFYVE16Q7Z3T8 1539 aa14.46□□□□□ -0.09
CD44-232ENST00000531118 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.46□□□□□ -0.09
CD44-232ENST00000531118 FOXD4L1Q9NU39 408 aa14.46□□□□□ -0.09
CD44-232ENST00000531118 ARID3CA6NKF2 412 aa14.45□□□□□ -0.1
CD44-232ENST00000531118 POGZQ7Z3K3 1410 aa14.45□□□□□ -0.1
CD44-232ENST00000531118 STRCQ7RTU9 1775 aa14.45□□□□□ -0.1
CD44-232ENST00000531118 DENND4BO75064 1496 aaPredicted RBP14.44□□□□□ -0.1
CD44-232ENST00000531118 SAMD9Q5K651 1589 aa14.44□□□□□ -0.1
CD44-232ENST00000531118 FHOD3Q2V2M9 1422 aa14.44□□□□□ -0.1
CD44-232ENST00000531118 AKNAQ7Z591 1439 aa14.44□□□□□ -0.1
CD44-232ENST00000531118 ARHGEF12Q9NZN5 1544 aa14.41□□□□□ -0.1
CD44-232ENST00000531118 YEATS2Q9ULM3 1422 aa14.41□□□□□ -0.1
CD44-232ENST00000531118 HECW1Q76N89 1606 aa14.39□□□□□ -0.11
CD44-232ENST00000531118 PRXQ9BXM0 1461 aa14.38□□□□□ -0.11
CD44-232ENST00000531118 NUP153P49790 1475 aaKnown RBP14.38□□□□□ -0.11
CD44-232ENST00000531118 ZBTB22O15209 634 aa14.37□□□□□ -0.11
CD44-232ENST00000531118 MAGI2Q86UL8 1455 aa14.37□□□□□ -0.11
CD44-232ENST00000531118 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.36□□□□□ -0.11
CD44-232ENST00000531118 CSRNP3Q8WYN3 585 aa14.34□□□□□ -0.11
CD44-232ENST00000531118 LTBP4Q8N2S1 1624 aa14.33□□□□□ -0.12
CD44-232ENST00000531118 IQSEC2Q5JU85 1478 aa14.32□□□□□ -0.12
CD44-232ENST00000531118 C9orf84Q5VXU9 1444 aa14.31□□□□□ -0.12
CD44-232ENST00000531118 UHRF1BP1Q6BDS2 1440 aa14.31□□□□□ -0.12
CD44-232ENST00000531118 P3H3Q8IVL6 736 aa14.3□□□□□ -0.12
CD44-232ENST00000531118 SETD1BQ9UPS6 1966 aaKnown RBP14.3□□□□□ -0.12
CD44-232ENST00000531118 MLECQ14165 292 aa14.29□□□□□ -0.12
CD44-232ENST00000531118 PTPRTO14522 1441 aa14.29□□□□□ -0.12
CD44-232ENST00000531118 C3P01024 1663 aa14.28□□□□□ -0.12
CD44-232ENST00000531118 FAM9AQ8IZU1 332 aaPredicted RBP14.28□□□□□ -0.12
CD44-232ENST00000531118 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.27□□□□□ -0.13
CD44-232ENST00000531118 HNRNPUL2Q1KMD3 747 aaKnown RBP14.27□□□□□ -0.13
CD44-232ENST00000531118 ATP10AO60312 1499 aa14.26□□□□□ -0.13
CD44-232ENST00000531118 MYCNP04198 464 aaPredicted RBP14.26□□□□□ -0.13
CD44-232ENST00000531118 MYO5CQ9NQX4 1742 aa14.26□□□□□ -0.13
CD44-232ENST00000531118 KDM5CP41229 1560 aa14.23□□□□□ -0.13
CD44-232ENST00000531118 DIP2CQ9Y2E4 1556 aa14.23□□□□□ -0.13
CD44-232ENST00000531118 SCAPERQ9BY12 1400 aa14.23□□□□□ -0.13
CD44-232ENST00000531118 REREQ9P2R6 1566 aa14.22□□□□□ -0.13
CD44-232ENST00000531118 CEBPAP49715 358 aaPredicted RBP14.22□□□□□ -0.13
CD44-232ENST00000531118 U3KPZ7 1027 aaPredicted RBP14.22□□□□□ -0.13
CD44-232ENST00000531118 RNF39Q9H2S5 420 aa14.21□□□□□ -0.13
CD44-232ENST00000531118 ABCA6Q8N139 1617 aa14.21□□□□□ -0.13
CD44-232ENST00000531118 NCOA1Q15788 1441 aa14.21□□□□□ -0.13
CD44-232ENST00000531118 CDK13Q14004 1512 aaKnown RBP14.2□□□□□ -0.14
CD44-232ENST00000531118 ZNF518AQ6AHZ1 1483 aa14.18□□□□□ -0.14
CD44-232ENST00000531118 PLCH2O75038 1416 aa14.18□□□□□ -0.14
CD44-232ENST00000531118 PLEKHD1A6NEE1 506 aa14.18□□□□□ -0.14
CD44-232ENST00000531118 MED1Q15648 1581 aaPredicted RBP14.17□□□□□ -0.14
CD44-232ENST00000531118 KIF14Q15058 1648 aa14.15□□□□□ -0.14
CD44-232ENST00000531118 CAMSAP1Q5T5Y3 1602 aa14.15□□□□□ -0.14
CD44-232ENST00000531118 ZNF142P52746 1687 aaPredicted RBP14.15□□□□□ -0.14
CD44-232ENST00000531118 AGLP35573 1532 aa14.15□□□□□ -0.14
CD44-232ENST00000531118 MROH2AA6NES4 1674 aa14.14□□□□□ -0.15
CD44-232ENST00000531118 SUPT6HQ7KZ85 1726 aaKnown RBP14.12□□□□□ -0.15
CD44-232ENST00000531118 MYO3AQ8NEV4 1616 aa14.12□□□□□ -0.15
CD44-232ENST00000531118 TRAPPC8Q9Y2L5 1435 aa14.11□□□□□ -0.15
CD44-232ENST00000531118 ITSN2Q9NZM3 1697 aa14.1□□□□□ -0.15
CD44-232ENST00000531118 ARHGAP5Q13017 1502 aa14.1□□□□□ -0.15
CD44-232ENST00000531118 CDC42BPBQ9Y5S2 1711 aa14.08□□□□□ -0.16
CD44-232ENST00000531118 C1QBPQ07021 282 aaKnown RBP14.08□□□□□ -0.16
CD44-232ENST00000531118 SAMD1Q6SPF0 538 aaPredicted RBP14.08□□□□□ -0.16
CD44-232ENST00000531118 ABCC1P33527 1531 aa14.08□□□□□ -0.16
CD44-232ENST00000531118 CNTLNQ9NXG0 1405 aa14.07□□□□□ -0.16
CD44-232ENST00000531118 MLH3Q9UHC1 1453 aa14.07□□□□□ -0.16
CD44-232ENST00000531118 ZNF335Q9H4Z2 1342 aaPredicted RBP14.07□□□□□ -0.16
CD44-232ENST00000531118 PREX2Q70Z35 1606 aa14.07□□□□□ -0.16
CD44-232ENST00000531118 NPATQ14207 1427 aa14.07□□□□□ -0.16
CD44-232ENST00000531118 KIDINS220Q9ULH0 1771 aa14.06□□□□□ -0.16
CD44-232ENST00000531118 PLA2R1Q13018 1463 aa14.06□□□□□ -0.16
CD44-232ENST00000531118 UBAP1LF5GYI3 381 aa14.06□□□□□ -0.16
CD44-232ENST00000531118 CEP170BQ9Y4F5 1589 aaPredicted RBP14.05□□□□□ -0.16
CD44-232ENST00000531118 EFCAB2Q5VUJ9 269 aa14.05□□□□□ -0.16
CD44-232ENST00000531118 RANGAP1P46060 587 aaPredicted RBP14.04□□□□□ -0.16
CD44-232ENST00000531118 TCOF1Q13428 1488 aaKnown RBP14.04□□□□□ -0.16
CD44-232ENST00000531118 LRRIQ1Q96JM4 1722 aa14.04□□□□□ -0.16
CD44-232ENST00000531118 APLP2Q06481 763 aa14.03□□□□□ -0.16
CD44-232ENST00000531118 POLR1AO95602 1720 aaPredicted RBP14.02□□□□□ -0.16
CD44-232ENST00000531118 CLTCQ00610 1675 aaKnown RBP14.02□□□□□ -0.16
CD44-232ENST00000531118 TROQ12816 1431 aaPredicted RBP14.01□□□□□ -0.17
CD44-232ENST00000531118 AFAP1Q8N556 730 aa14.01□□□□□ -0.17
CD44-232ENST00000531118 ATXN8OSP0DMR3 200 aa14□□□□□ -0.17
CD44-232ENST00000531118 ESF1Q9H501 851 aaKnown RBP14□□□□□ -0.17
CD44-232ENST00000531118 NCKAP5LQ9HCH0 1330 aa13.98□□□□□ -0.17
CD44-232ENST00000531118 MYT1LQ9UL68 1186 aa13.98□□□□□ -0.17
CD44-232ENST00000531118 CLIP1P30622 1438 aa13.98□□□□□ -0.17
CD44-232ENST00000531118 PLXNC1O60486 1568 aa13.97□□□□□ -0.17
CD44-232ENST00000531118 CDC42BPAQ5VT25 1732 aa13.97□□□□□ -0.17
CD44-232ENST00000531118 EEA1Q15075 1411 aa13.97□□□□□ -0.17
CD44-232ENST00000531118 SAMD9LQ8IVG5 1584 aa13.96□□□□□ -0.17
CD44-232ENST00000531118 CPS1P31327 1500 aa13.96□□□□□ -0.17
CD44-232ENST00000531118 HSPA1LP34931 641 aa13.96□□□□□ -0.17
CD44-232ENST00000531118 FMN1Q68DA7 1419 aa13.96□□□□□ -0.18
CD44-232ENST00000531118 NEURL4Q96JN8 1562 aa13.96□□□□□ -0.18
CD44-232ENST00000531118 ALKQ9UM73 1620 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms