RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, human

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSTF3-208	ENST00000528865	DNMT1	P26358	1616 aa	Known RBP	11.71	□□□□□ -0.54
CSTF3-208	ENST00000528865	GRIN2A	Q12879	1464 aa		11.7	□□□□□ -0.54
CSTF3-208	ENST00000528865	RPRD2	Q5VT52	1461 aa	Known RBP	11.7	□□□□□ -0.54
CSTF3-208	ENST00000528865	FKBP8	Q14318	412 aa		11.7	□□□□□ -0.54
CSTF3-208	ENST00000528865	RAPGEF6	Q8TEU7	1601 aa		11.69	□□□□□ -0.54
CSTF3-208	ENST00000528865	TRO	Q12816	1431 aa	Predicted RBP	11.69	□□□□□ -0.54
CSTF3-208	ENST00000528865	NCOA1	Q15788	1441 aa		11.68	□□□□□ -0.54
CSTF3-208	ENST00000528865	MAGI1	Q96QZ7	1491 aa	Predicted RBP	11.67	□□□□□ -0.54
CSTF3-208	ENST00000528865	TEX14	Q8IWB6	1497 aa		11.66	□□□□□ -0.54
CSTF3-208	ENST00000528865	NEFL	P07196	543 aa		11.66	□□□□□ -0.54
CSTF3-208	ENST00000528865	SPATA31E1	Q6ZUB1	1445 aa		11.66	□□□□□ -0.54
CSTF3-208	ENST00000528865	CNTLN	Q9NXG0	1405 aa		11.66	□□□□□ -0.54
CSTF3-208	ENST00000528865	CCDC7	Q96M83	1385 aa		11.66	□□□□□ -0.54
CSTF3-208	ENST00000528865	ZNF644	Q9H582	1327 aa	Predicted RBP	11.65	□□□□□ -0.54
CSTF3-208	ENST00000528865	ADGRL2	O95490	1459 aa		11.65	□□□□□ -0.54
CSTF3-208	ENST00000528865	NBPF8	Q3BBV2	869 aa		11.65	□□□□□ -0.54
CSTF3-208	ENST00000528865	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.65	□□□□□ -0.55
CSTF3-208	ENST00000528865	C11orf95	C9JLR9	678 aa	Predicted RBP	11.64	□□□□□ -0.55
CSTF3-208	ENST00000528865	SYNJ2	O15056	1496 aa		11.63	□□□□□ -0.55
CSTF3-208	ENST00000528865	PZP	P20742	1482 aa		11.63	□□□□□ -0.55
CSTF3-208	ENST00000528865	PRG4	Q92954	1404 aa	Predicted RBP	11.63	□□□□□ -0.55
CSTF3-208	ENST00000528865	ADCY10	Q96PN6	1610 aa		11.63	□□□□□ -0.55
CSTF3-208	ENST00000528865	EIF4G3	O43432	1585 aa	Known RBP	11.62	□□□□□ -0.55
CSTF3-208	ENST00000528865	NUP160	Q12769	1436 aa		11.62	□□□□□ -0.55
CSTF3-208	ENST00000528865	FOXD1	Q16676	465 aa		11.62	□□□□□ -0.55
CSTF3-208	ENST00000528865	ERICH6B	Q5W0A0	696 aa		11.62	□□□□□ -0.55
CSTF3-208	ENST00000528865	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.62	□□□□□ -0.55
CSTF3-208	ENST00000528865	ARID3C	A6NKF2	412 aa		11.61	□□□□□ -0.55
CSTF3-208	ENST00000528865	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.61	□□□□□ -0.55
CSTF3-208	ENST00000528865	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.61	□□□□□ -0.55
CSTF3-208	ENST00000528865	CAMSAP2	Q08AD1	1489 aa		11.61	□□□□□ -0.55
CSTF3-208	ENST00000528865	KIAA1107	Q9UPP5	1409 aa		11.6	□□□□□ -0.55
CSTF3-208	ENST00000528865	CEP170	Q5SW79	1584 aa		11.6	□□□□□ -0.55
CSTF3-208	ENST00000528865	MBD5	Q9P267	1494 aa		11.6	□□□□□ -0.55
CSTF3-208	ENST00000528865	JPH4	Q96JJ6	628 aa		11.6	□□□□□ -0.55
CSTF3-208	ENST00000528865	CARMIL2	Q6F5E8	1435 aa		11.6	□□□□□ -0.55
CSTF3-208	ENST00000528865	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.59	□□□□□ -0.55
CSTF3-208	ENST00000528865	ITSN2	Q9NZM3	1697 aa		11.59	□□□□□ -0.55
CSTF3-208	ENST00000528865	ANKRD30A	Q9BXX3	1397 aa		11.58	□□□□□ -0.56
CSTF3-208	ENST00000528865	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.58	□□□□□ -0.56
CSTF3-208	ENST00000528865	BCAN	Q96GW7	911 aa		11.58	□□□□□ -0.56
CSTF3-208	ENST00000528865	ADGB	Q8N7X0	1667 aa		11.58	□□□□□ -0.56
CSTF3-208	ENST00000528865	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.58	□□□□□ -0.56
CSTF3-208	ENST00000528865	PLB1	Q6P1J6	1458 aa		11.57	□□□□□ -0.56
CSTF3-208	ENST00000528865	ABCA8	O94911	1581 aa		11.57	□□□□□ -0.56
CSTF3-208	ENST00000528865	KIF7	Q2M1P5	1343 aa		11.57	□□□□□ -0.56
CSTF3-208	ENST00000528865	ABCC10	Q5T3U5	1492 aa		11.57	□□□□□ -0.56
CSTF3-208	ENST00000528865	UHRF1BP1	Q6BDS2	1440 aa		11.56	□□□□□ -0.56
CSTF3-208	ENST00000528865	SHANK2	Q9UPX8	1470 aa		11.56	□□□□□ -0.56
CSTF3-208	ENST00000528865	PLEKHD1	A6NEE1	506 aa		11.55	□□□□□ -0.56
CSTF3-208	ENST00000528865	CCDC184	Q52MB2	194 aa		11.55	□□□□□ -0.56
CSTF3-208	ENST00000528865	ATP10B	O94823	1461 aa		11.54	□□□□□ -0.56
CSTF3-208	ENST00000528865	CROCC2	H7BZ55	1655 aa		11.54	□□□□□ -0.56
CSTF3-208	ENST00000528865	POLR1A	O95602	1720 aa	Predicted RBP	11.54	□□□□□ -0.56
CSTF3-208	ENST00000528865	KIF14	Q15058	1648 aa		11.53	□□□□□ -0.56
CSTF3-208	ENST00000528865	ANKRD50	Q9ULJ7	1429 aa		11.53	□□□□□ -0.56
CSTF3-208	ENST00000528865	KDM5D	Q9BY66	1539 aa		11.53	□□□□□ -0.56
CSTF3-208	ENST00000528865	ZBED9	Q6R2W3	1325 aa		11.53	□□□□□ -0.56
CSTF3-208	ENST00000528865	PKD2	Q13563	968 aa		11.52	□□□□□ -0.57
CSTF3-208	ENST00000528865	RBM19	Q9Y4C8	960 aa	Known RBP	11.52	□□□□□ -0.57
CSTF3-208	ENST00000528865	DHX29	Q7Z478	1369 aa	Known RBP	11.52	□□□□□ -0.57
CSTF3-208	ENST00000528865	PTPRG	P23470	1445 aa		11.52	□□□□□ -0.57
CSTF3-208	ENST00000528865	ERCC6	Q03468	1493 aa		11.51	□□□□□ -0.57
CSTF3-208	ENST00000528865	ANP32E	Q9BTT0	268 aa		11.51	□□□□□ -0.57
CSTF3-208	ENST00000528865	RSPH4A	Q5TD94	716 aa		11.5	□□□□□ -0.57
CSTF3-208	ENST00000528865	MRS2	Q9HD23	443 aa		11.5	□□□□□ -0.57
CSTF3-208	ENST00000528865	ARHGEF5	Q12774	1597 aa		11.5	□□□□□ -0.57
CSTF3-208	ENST00000528865	PPP4R2	Q9NY27	417 aa		11.49	□□□□□ -0.57
CSTF3-208	ENST00000528865	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.49	□□□□□ -0.57
CSTF3-208	ENST00000528865	ROCK2	O75116	1388 aa	Known RBP	11.49	□□□□□ -0.57
CSTF3-208	ENST00000528865	C9orf84	Q5VXU9	1444 aa		11.49	□□□□□ -0.57
CSTF3-208	ENST00000528865	RALGAPB	Q86X10	1494 aa		11.49	□□□□□ -0.57
CSTF3-208	ENST00000528865	ARHGEF12	Q9NZN5	1544 aa		11.49	□□□□□ -0.57
CSTF3-208	ENST00000528865	USP47	Q96K76	1375 aa		11.48	□□□□□ -0.57
CSTF3-208	ENST00000528865	CDC42BPA	Q5VT25	1732 aa		11.48	□□□□□ -0.57
CSTF3-208	ENST00000528865	NUP155	O75694	1391 aa		11.47	□□□□□ -0.57
CSTF3-208	ENST00000528865	TSPY4	P0CV99	314 aa		11.47	□□□□□ -0.57
CSTF3-208	ENST00000528865	TSPY10	P0CW01	314 aa		11.47	□□□□□ -0.57
CSTF3-208	ENST00000528865	KDM5C	P41229	1560 aa		11.46	□□□□□ -0.57
CSTF3-208	ENST00000528865	FAM9B	Q8IZU0	186 aa		11.46	□□□□□ -0.57
CSTF3-208	ENST00000528865	BCORL1	Q5H9F3	1711 aa		11.46	□□□□□ -0.58
CSTF3-208	ENST00000528865	FBLN2	P98095	1184 aa		11.45	□□□□□ -0.58
CSTF3-208	ENST00000528865	SMG6	Q86US8	1419 aa	Known RBP	11.44	□□□□□ -0.58
CSTF3-208	ENST00000528865	RNF123	Q5XPI4	1314 aa		11.44	□□□□□ -0.58
CSTF3-208	ENST00000528865	KTN1	Q86UP2	1357 aa	Known RBP	11.42	□□□□□ -0.58
CSTF3-208	ENST00000528865	KIF15	Q9NS87	1388 aa		11.42	□□□□□ -0.58
CSTF3-208	ENST00000528865	FANCI	Q9NVI1	1328 aa		11.42	□□□□□ -0.58
CSTF3-208	ENST00000528865	PNISR	Q8TF01	805 aa	Known RBP	11.42	□□□□□ -0.58
CSTF3-208	ENST00000528865	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
CSTF3-208	ENST00000528865	CCDC141	Q6ZP82	1450 aa		11.4	□□□□□ -0.58
CSTF3-208	ENST00000528865	CARD11	Q9BXL7	1154 aa		11.4	□□□□□ -0.58
CSTF3-208	ENST00000528865	MAST1	Q9Y2H9	1570 aa		11.4	□□□□□ -0.58
CSTF3-208	ENST00000528865	IRX6	P78412	446 aa	Predicted RBP	11.39	□□□□□ -0.59
CSTF3-208	ENST00000528865	RALBP1	Q15311	655 aa		11.39	□□□□□ -0.59
CSTF3-208	ENST00000528865	NUDC	Q9Y266	331 aa		11.39	□□□□□ -0.59
CSTF3-208	ENST00000528865	SAMD9L	Q8IVG5	1584 aa		11.38	□□□□□ -0.59
CSTF3-208	ENST00000528865	LRPPRC	P42704	1394 aa	Known RBP	11.38	□□□□□ -0.59
CSTF3-208	ENST00000528865	GPRASP1	Q5JY77	1395 aa		11.38	□□□□□ -0.59
CSTF3-208	ENST00000528865	FAM135A	Q9P2D6	1515 aa		11.37	□□□□□ -0.59
CSTF3-208	ENST00000528865	PREX2	Q70Z35	1606 aa		11.37	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms