RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 CAMSAP2Q08AD1 1489 aa21.38■■□□□ 1.01
ECHDC1-220ENST00000528402 RRP7BPQ9NSQ0 103 aa21.37■■□□□ 1.01
ECHDC1-220ENST00000528402 CHIC2Q9UKJ5 165 aa21.36■■□□□ 1.01
ECHDC1-220ENST00000528402 ABCC2Q92887 1545 aa21.36■■□□□ 1.01
ECHDC1-220ENST00000528402 CDC42BPAQ5VT25 1732 aa21.35■■□□□ 1.01
ECHDC1-220ENST00000528402 UHRF1BP1LA0JNW5 1464 aa21.35■■□□□ 1.01
ECHDC1-220ENST00000528402 ADGBQ8N7X0 1667 aa21.32■■□□□ 1
ECHDC1-220ENST00000528402 ADGRL2O95490 1459 aa21.32■■□□□ 1
ECHDC1-220ENST00000528402 RSPH4AQ5TD94 716 aa21.31■■□□□ 1
ECHDC1-220ENST00000528402 ZNF644Q9H582 1327 aaPredicted RBP21.31■■□□□ 1
ECHDC1-220ENST00000528402 SIN3AQ96ST3 1273 aa21.29■■□□□ 1
ECHDC1-220ENST00000528402 CROCC2H7BZ55 1655 aa21.29■■□□□ 1
ECHDC1-220ENST00000528402 NEUROD1Q13562 356 aa21.29■■□□□ 1
ECHDC1-220ENST00000528402 SHANK2Q9UPX8 1470 aa21.28■■□□□ 1
ECHDC1-220ENST00000528402 ANKRD30AQ9BXX3 1397 aa21.27■■□□□ 1
ECHDC1-220ENST00000528402 TRIM52Q96A61 297 aa21.27■■□□□ 1
ECHDC1-220ENST00000528402 ERCC6L2Q5T890 1561 aa21.27■□□□□ 0.99
ECHDC1-220ENST00000528402 NCOA1Q15788 1441 aa21.26■□□□□ 0.99
ECHDC1-220ENST00000528402 PPP1R15AO75807 674 aaPredicted RBP21.26■□□□□ 0.99
ECHDC1-220ENST00000528402 ARHGEF5Q12774 1597 aa21.25■□□□□ 0.99
ECHDC1-220ENST00000528402 ZNF777Q9ULD5 760 aaPredicted RBP21.25■□□□□ 0.99
ECHDC1-220ENST00000528402 TONSLQ96HA7 1378 aa21.24■□□□□ 0.99
ECHDC1-220ENST00000528402 MPHOSPH9Q99550 1183 aa21.23■□□□□ 0.99
ECHDC1-220ENST00000528402 PREX2Q70Z35 1606 aa21.23■□□□□ 0.99
ECHDC1-220ENST00000528402 TSPY4P0CV99 314 aa21.22■□□□□ 0.99
ECHDC1-220ENST00000528402 TSPY10P0CW01 314 aa21.22■□□□□ 0.99
ECHDC1-220ENST00000528402 KDM5BQ9UGL1 1544 aa21.22■□□□□ 0.99
ECHDC1-220ENST00000528402 KDM6BO15054 1643 aa21.22■□□□□ 0.99
ECHDC1-220ENST00000528402 PLEKHH2Q8IVE3 1493 aa21.19■□□□□ 0.98
ECHDC1-220ENST00000528402 CDC42BPBQ9Y5S2 1711 aa21.19■□□□□ 0.98
ECHDC1-220ENST00000528402 ZCCHC11Q5TAX3 1644 aaKnown RBP21.17■□□□□ 0.98
ECHDC1-220ENST00000528402 C9orf84Q5VXU9 1444 aa21.16■□□□□ 0.98
ECHDC1-220ENST00000528402 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.16■□□□□ 0.98
ECHDC1-220ENST00000528402 MYO5CQ9NQX4 1742 aa21.15■□□□□ 0.98
ECHDC1-220ENST00000528402 MBD5Q9P267 1494 aa21.15■□□□□ 0.98
ECHDC1-220ENST00000528402 KIAA1107Q9UPP5 1409 aa21.14■□□□□ 0.98
ECHDC1-220ENST00000528402 DENND4BO75064 1496 aaPredicted RBP21.14■□□□□ 0.97
ECHDC1-220ENST00000528402 CCDC141Q6ZP82 1450 aa21.14■□□□□ 0.97
ECHDC1-220ENST00000528402 OSCARQ8IYS5 282 aa21.12■□□□□ 0.97
ECHDC1-220ENST00000528402 SAMD9LQ8IVG5 1584 aa21.12■□□□□ 0.97
ECHDC1-220ENST00000528402 ANKRD50Q9ULJ7 1429 aa21.12■□□□□ 0.97
ECHDC1-220ENST00000528402 ARHGAP5Q13017 1502 aa21.1■□□□□ 0.97
ECHDC1-220ENST00000528402 TTC37Q6PGP7 1564 aa21.1■□□□□ 0.97
ECHDC1-220ENST00000528402 MAST1Q9Y2H9 1570 aa21.1■□□□□ 0.97
ECHDC1-220ENST00000528402 ANKRD30BQ9BXX2 1392 aa21.1■□□□□ 0.97
ECHDC1-220ENST00000528402 SLC4A1APQ9BWU0 796 aaKnown RBP21.1■□□□□ 0.97
ECHDC1-220ENST00000528402 PLCH2O75038 1416 aa21.09■□□□□ 0.97
ECHDC1-220ENST00000528402 ARAP3Q8WWN8 1544 aa21.08■□□□□ 0.97
ECHDC1-220ENST00000528402 HNRNPMP52272 730 aaKnown RBP eCLIP21.08■□□□□ 0.973e-8■■■■■ 29
ECHDC1-220ENST00000528402 EFCAB2Q5VUJ9 269 aa21.06■□□□□ 0.96
ECHDC1-220ENST00000528402 PZPP20742 1482 aa21.05■□□□□ 0.96
ECHDC1-220ENST00000528402 KDM5DQ9BY66 1539 aa21.04■□□□□ 0.96
ECHDC1-220ENST00000528402 RPRD2Q5VT52 1461 aaKnown RBP21.04■□□□□ 0.96
ECHDC1-220ENST00000528402 MIER1Q8N108 512 aa21.04■□□□□ 0.96
ECHDC1-220ENST00000528402 KIF15Q9NS87 1388 aa21.03■□□□□ 0.96
ECHDC1-220ENST00000528402 KCNH8Q96L42 1107 aa21.03■□□□□ 0.96
ECHDC1-220ENST00000528402 CENPBP07199 599 aaPredicted RBP21.02■□□□□ 0.96
ECHDC1-220ENST00000528402 SYCP2Q9BX26 1530 aa21■□□□□ 0.95
ECHDC1-220ENST00000528402 WDR7Q9Y4E6 1490 aa20.99■□□□□ 0.95
ECHDC1-220ENST00000528402 PLXNC1O60486 1568 aa20.98■□□□□ 0.95
ECHDC1-220ENST00000528402 NUP155O75694 1391 aa20.97■□□□□ 0.95
ECHDC1-220ENST00000528402 NPM1P06748 294 aaKnown RBP eCLIP20.94■□□□□ 0.94
ECHDC1-220ENST00000528402 PKD2Q13563 968 aa20.94■□□□□ 0.94
ECHDC1-220ENST00000528402 L3MBTL2Q969R5 705 aa20.94■□□□□ 0.94
ECHDC1-220ENST00000528402 ABCC1P33527 1531 aa20.93■□□□□ 0.94
ECHDC1-220ENST00000528402 DUOX2Q9NRD8 1548 aa20.92■□□□□ 0.94
ECHDC1-220ENST00000528402 ABCA9Q8IUA7 1624 aa20.92■□□□□ 0.94
ECHDC1-220ENST00000528402 FOXD1Q16676 465 aa20.92■□□□□ 0.94
ECHDC1-220ENST00000528402 RTEL1-TNFRSF6BF6WH68 1400 aa20.92■□□□□ 0.94
ECHDC1-220ENST00000528402 TEX14Q8IWB6 1497 aa20.89■□□□□ 0.93
ECHDC1-220ENST00000528402 ERBINQ96RT1 1412 aa20.89■□□□□ 0.93
ECHDC1-220ENST00000528402 UNC13BO14795 1591 aa20.88■□□□□ 0.93
ECHDC1-220ENST00000528402 ARHGEF12Q9NZN5 1544 aa20.88■□□□□ 0.93
ECHDC1-220ENST00000528402 ASXL2Q76L83 1435 aa20.87■□□□□ 0.93
ECHDC1-220ENST00000528402 EIF4G2P78344 907 aaKnown RBP eCLIP20.85■□□□□ 0.93
ECHDC1-220ENST00000528402 FAM135AQ9P2D6 1515 aa20.84■□□□□ 0.93
ECHDC1-220ENST00000528402 FANCAO15360 1455 aa20.81■□□□□ 0.92
ECHDC1-220ENST00000528402 SPAG9O60271 1321 aaKnown RBP20.81■□□□□ 0.92
ECHDC1-220ENST00000528402 IQGAP3Q86VI3 1631 aa20.8■□□□□ 0.92
ECHDC1-220ENST00000528402 TRAPPC8Q9Y2L5 1435 aa20.8■□□□□ 0.92
ECHDC1-220ENST00000528402 MAGI2Q86UL8 1455 aa20.8■□□□□ 0.92
ECHDC1-220ENST00000528402 DDX10Q13206 875 aaKnown RBP20.79■□□□□ 0.92
ECHDC1-220ENST00000528402 HSPA5P11021 654 aaKnown RBP20.77■□□□□ 0.91
ECHDC1-220ENST00000528402 CFAP74Q9C0B2 1584 aa20.77■□□□□ 0.91
ECHDC1-220ENST00000528402 UHRF1BP1Q6BDS2 1440 aa20.76■□□□□ 0.91
ECHDC1-220ENST00000528402 NBPF8Q3BBV2 869 aa20.74■□□□□ 0.91
ECHDC1-220ENST00000528402 ZFYVE16Q7Z3T8 1539 aa20.74■□□□□ 0.91
ECHDC1-220ENST00000528402 ADGRL1O94910 1474 aa20.74■□□□□ 0.91
ECHDC1-220ENST00000528402 ATP10AO60312 1499 aa20.73■□□□□ 0.91
ECHDC1-220ENST00000528402 SCAPERQ9BY12 1400 aa20.72■□□□□ 0.91
ECHDC1-220ENST00000528402 INO80Q9ULG1 1556 aaPredicted RBP20.71■□□□□ 0.91
ECHDC1-220ENST00000528402 ANP32CO43423 234 aa20.7■□□□□ 0.9
ECHDC1-220ENST00000528402 AFAP1Q8N556 730 aa20.7■□□□□ 0.9
ECHDC1-220ENST00000528402 HIRIP3Q9BW71 556 aaPredicted RBP20.7■□□□□ 0.9
ECHDC1-220ENST00000528402 CCDC144AA2RUR9 1427 aa20.7■□□□□ 0.9
ECHDC1-220ENST00000528402 ATP7AQ04656 1500 aa20.7■□□□□ 0.9
ECHDC1-220ENST00000528402 CCER2I3L3R5 266 aa20.7■□□□□ 0.9
ECHDC1-220ENST00000528402 CD109Q6YHK3 1445 aa20.68■□□□□ 0.9
ECHDC1-220ENST00000528402 SPATA31E1Q6ZUB1 1445 aa20.68■□□□□ 0.9
ECHDC1-220ENST00000528402 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.68■□□□□ 0.92e-7■■■□□ 17
Retrieved 100 of 20,778 RNA–protein pairs in 153.4 ms