RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 TSHZ2Q9NRE2 1034 aa15.51■□□□□ 0.07
HDAC9-228ENST00000524023 EIF4G2P78344 907 aaKnown RBP eCLIP15.49■□□□□ 0.07
HDAC9-228ENST00000524023 L3MBTL2Q969R5 705 aa15.49■□□□□ 0.07
HDAC9-228ENST00000524023 FOXD1Q16676 465 aa15.49■□□□□ 0.07
HDAC9-228ENST00000524023 CDK11AQ9UQ88 783 aaPredicted RBP15.49■□□□□ 0.07
HDAC9-228ENST00000524023 ANKRD30BQ9BXX2 1392 aa15.49■□□□□ 0.07
HDAC9-228ENST00000524023 ZNF644Q9H582 1327 aaPredicted RBP15.48■□□□□ 0.07
HDAC9-228ENST00000524023 BCANQ96GW7 911 aa15.48■□□□□ 0.07
HDAC9-228ENST00000524023 RPRD2Q5VT52 1461 aaKnown RBP15.47■□□□□ 0.07
HDAC9-228ENST00000524023 NEFLP07196 543 aa15.46■□□□□ 0.07
HDAC9-228ENST00000524023 TROQ12816 1431 aaPredicted RBP15.45■□□□□ 0.06
HDAC9-228ENST00000524023 MAGI1Q96QZ7 1491 aaPredicted RBP15.44■□□□□ 0.06
HDAC9-228ENST00000524023 PRG4Q92954 1404 aaPredicted RBP15.44■□□□□ 0.06
HDAC9-228ENST00000524023 TEX14Q8IWB6 1497 aa15.43■□□□□ 0.06
HDAC9-228ENST00000524023 CNTLNQ9NXG0 1405 aa15.43■□□□□ 0.06
HDAC9-228ENST00000524023 ITSN2Q9NZM3 1697 aa15.43■□□□□ 0.06
HDAC9-228ENST00000524023 CEP170Q5SW79 1584 aa15.43■□□□□ 0.06
HDAC9-228ENST00000524023 CAMSAP2Q08AD1 1489 aa15.42■□□□□ 0.06
HDAC9-228ENST00000524023 NCOA1Q15788 1441 aa15.42■□□□□ 0.06
HDAC9-228ENST00000524023 SLC4A1APQ9BWU0 796 aaKnown RBP15.42■□□□□ 0.06
HDAC9-228ENST00000524023 ADCY10Q96PN6 1610 aa15.41■□□□□ 0.06
HDAC9-228ENST00000524023 ADGBQ8N7X0 1667 aa15.41■□□□□ 0.06
HDAC9-228ENST00000524023 NBPF8Q3BBV2 869 aa15.41■□□□□ 0.06
HDAC9-228ENST00000524023 PLB1Q6P1J6 1458 aa15.41■□□□□ 0.06
HDAC9-228ENST00000524023 SYNJ2O15056 1496 aa15.4■□□□□ 0.06
HDAC9-228ENST00000524023 CCDC7Q96M83 1385 aa15.4■□□□□ 0.06
HDAC9-228ENST00000524023 GPATCH8Q9UKJ3 1502 aaKnown RBP15.4■□□□□ 0.06
HDAC9-228ENST00000524023 KIF14Q15058 1648 aa15.39■□□□□ 0.05
HDAC9-228ENST00000524023 C11orf95C9JLR9 678 aaPredicted RBP15.39■□□□□ 0.05
HDAC9-228ENST00000524023 CHMP7Q8WUX9 453 aaPredicted RBP15.39■□□□□ 0.05
HDAC9-228ENST00000524023 CFDP1Q9UEE9 299 aaPredicted RBP15.39■□□□□ 0.05
HDAC9-228ENST00000524023 PZPP20742 1482 aa15.39■□□□□ 0.05
HDAC9-228ENST00000524023 HNRNPUQ00839 825 aaKnown RBP eCLIP15.39■□□□□ 0.05
HDAC9-228ENST00000524023 CROCC2H7BZ55 1655 aa15.38■□□□□ 0.05
HDAC9-228ENST00000524023 ERCC6Q03468 1493 aa15.38■□□□□ 0.05
HDAC9-228ENST00000524023 ADGRL2O95490 1459 aa15.37■□□□□ 0.05
HDAC9-228ENST00000524023 POLR1AO95602 1720 aaPredicted RBP15.37■□□□□ 0.05
HDAC9-228ENST00000524023 SPATA31E1Q6ZUB1 1445 aa15.37■□□□□ 0.05
HDAC9-228ENST00000524023 CARMIL2Q6F5E8 1435 aa15.36■□□□□ 0.05
HDAC9-228ENST00000524023 NUP160Q12769 1436 aa15.35■□□□□ 0.05
HDAC9-228ENST00000524023 PRKRIP1Q9H875 184 aaPredicted RBP15.34■□□□□ 0.05
HDAC9-228ENST00000524023 JPH4Q96JJ6 628 aa15.34■□□□□ 0.05
HDAC9-228ENST00000524023 FBLN2P98095 1184 aa15.33■□□□□ 0.04
HDAC9-228ENST00000524023 ZNF777Q9ULD5 760 aaPredicted RBP15.33■□□□□ 0.04
HDAC9-228ENST00000524023 CCDC184Q52MB2 194 aa15.32■□□□□ 0.04
HDAC9-228ENST00000524023 KIAA1107Q9UPP5 1409 aa15.32■□□□□ 0.04
HDAC9-228ENST00000524023 KIF7Q2M1P5 1343 aa15.31■□□□□ 0.04
HDAC9-228ENST00000524023 MBD5Q9P267 1494 aa15.31■□□□□ 0.04
HDAC9-228ENST00000524023 ANKRD30AQ9BXX3 1397 aa15.31■□□□□ 0.04
HDAC9-228ENST00000524023 CDC42BPAQ5VT25 1732 aa15.31■□□□□ 0.04
HDAC9-228ENST00000524023 ABCA8O94911 1581 aa15.3■□□□□ 0.04
HDAC9-228ENST00000524023 ABCC10Q5T3U5 1492 aa15.28■□□□□ 0.04
HDAC9-228ENST00000524023 ANKRD50Q9ULJ7 1429 aa15.28■□□□□ 0.04
HDAC9-228ENST00000524023 PKD2Q13563 968 aa15.28■□□□□ 0.04
HDAC9-228ENST00000524023 PLEKHD1A6NEE1 506 aa15.27■□□□□ 0.04
HDAC9-228ENST00000524023 SHANK2Q9UPX8 1470 aa15.27■□□□□ 0.03
HDAC9-228ENST00000524023 ATP10BO94823 1461 aa15.26■□□□□ 0.03
HDAC9-228ENST00000524023 MRS2Q9HD23 443 aa15.26■□□□□ 0.03
HDAC9-228ENST00000524023 C9orf84Q5VXU9 1444 aa15.24■□□□□ 0.03
HDAC9-228ENST00000524023 FAM9BQ8IZU0 186 aa15.24■□□□□ 0.03
HDAC9-228ENST00000524023 BCORL1Q5H9F3 1711 aa15.24■□□□□ 0.03
HDAC9-228ENST00000524023 USP47Q96K76 1375 aa15.23■□□□□ 0.03
HDAC9-228ENST00000524023 KDM5CP41229 1560 aa15.22■□□□□ 0.03
HDAC9-228ENST00000524023 RBM19Q9Y4C8 960 aaKnown RBP15.22■□□□□ 0.03
HDAC9-228ENST00000524023 NUP155O75694 1391 aa15.21■□□□□ 0.03
HDAC9-228ENST00000524023 ZBED9Q6R2W3 1325 aa15.21■□□□□ 0.03
HDAC9-228ENST00000524023 KDM5DQ9BY66 1539 aa15.21■□□□□ 0.03
HDAC9-228ENST00000524023 IRX6P78412 446 aaPredicted RBP15.21■□□□□ 0.03
HDAC9-228ENST00000524023 UHRF1BP1Q6BDS2 1440 aa15.21■□□□□ 0.03
HDAC9-228ENST00000524023 ZNF326Q5BKZ1 582 aaKnown RBP15.21■□□□□ 0.02
HDAC9-228ENST00000524023 DHX29Q7Z478 1369 aaKnown RBP15.2■□□□□ 0.02
HDAC9-228ENST00000524023 ERICH6BQ5W0A0 696 aa15.2■□□□□ 0.02
HDAC9-228ENST00000524023 TSPY4P0CV99 314 aa15.19■□□□□ 0.02
HDAC9-228ENST00000524023 TSPY10P0CW01 314 aa15.19■□□□□ 0.02
HDAC9-228ENST00000524023 ARHGEF5Q12774 1597 aa15.19■□□□□ 0.02
HDAC9-228ENST00000524023 ARID4BQ4LE39 1312 aaPredicted RBP15.19■□□□□ 0.02
HDAC9-228ENST00000524023 RALGAPBQ86X10 1494 aa15.18■□□□□ 0.02
HDAC9-228ENST00000524023 ARHGEF12Q9NZN5 1544 aa15.18■□□□□ 0.02
HDAC9-228ENST00000524023 KIF15Q9NS87 1388 aa15.17■□□□□ 0.02
HDAC9-228ENST00000524023 ANP32EQ9BTT0 268 aa15.17■□□□□ 0.02
HDAC9-228ENST00000524023 PTPRGP23470 1445 aa15.16■□□□□ 0.02
HDAC9-228ENST00000524023 HNRNPMP52272 730 aaKnown RBP eCLIP15.15■□□□□ 0.02
HDAC9-228ENST00000524023 CDC42BPBQ9Y5S2 1711 aa15.14■□□□□ 0.01
HDAC9-228ENST00000524023 POLR3GLQ9BT43 218 aa15.14■□□□□ 0.01
HDAC9-228ENST00000524023 SAMD9LQ8IVG5 1584 aa15.13■□□□□ 0.01
HDAC9-228ENST00000524023 PREX2Q70Z35 1606 aa15.13■□□□□ 0.01
HDAC9-228ENST00000524023 PPP4R2Q9NY27 417 aa15.13■□□□□ 0.01
HDAC9-228ENST00000524023 CCDC141Q6ZP82 1450 aa15.13■□□□□ 0.01
HDAC9-228ENST00000524023 CARD11Q9BXL7 1154 aa15.12■□□□□ 0.01
HDAC9-228ENST00000524023 ROCK2O75116 1388 aaKnown RBP15.12■□□□□ 0.01
HDAC9-228ENST00000524023 FAM135AQ9P2D6 1515 aa15.09■□□□□ 0.01
HDAC9-228ENST00000524023 RSPH4AQ5TD94 716 aa15.09■□□□□ 0.01
HDAC9-228ENST00000524023 KDM2AQ9Y2K7 1162 aa15.09■□□□□ 0.01
HDAC9-228ENST00000524023 CNGB1Q14028 1251 aaPredicted RBP15.08■□□□□ 0.01
HDAC9-228ENST00000524023 DCAF11Q8TEB1 546 aa15.08■□□□□ 0.01
HDAC9-228ENST00000524023 SMG6Q86US8 1419 aaKnown RBP15.07■□□□□ 0
HDAC9-228ENST00000524023 ST20-MTHFSA0A0A6YYL1 179 aa15.07■□□□□ 0
HDAC9-228ENST00000524023 CHD1O14646 1710 aa15.06■□□□□ 0
HDAC9-228ENST00000524023 MAST1Q9Y2H9 1570 aa15.05■□□□□ 0
HDAC9-228ENST00000524023 SYCP2Q9BX26 1530 aa15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms