RNA–Protein interactions for RNA: ENST00000521387.1

CTNNA1-227, Transcript of catenin alpha 1, humanhuman

TSL 2

Gene CTNNA1, Length 871 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-227ENST00000521387 KIAA0556O60303 1618 aa13.27□□□□□ -0.29
CTNNA1-227ENST00000521387 ABCA8O94911 1581 aa13.25□□□□□ -0.29
CTNNA1-227ENST00000521387 FANCAO15360 1455 aa13.24□□□□□ -0.29
CTNNA1-227ENST00000521387 ABCA9Q8IUA7 1624 aa13.24□□□□□ -0.29
CTNNA1-227ENST00000521387 KIF27Q86VH2 1401 aa13.23□□□□□ -0.29
CTNNA1-227ENST00000521387 FER1L4A9Z1Z3 1794 aa13.23□□□□□ -0.29
CTNNA1-227ENST00000521387 ZNF335Q9H4Z2 1342 aaPredicted RBP13.23□□□□□ -0.29
CTNNA1-227ENST00000521387 RGS17Q9UGC6 210 aaPredicted RBP13.23□□□□□ -0.29
CTNNA1-227ENST00000521387 UHRF1BP1Q6BDS2 1440 aa13.22□□□□□ -0.29
CTNNA1-227ENST00000521387 AKNAQ7Z591 1439 aa13.22□□□□□ -0.29
CTNNA1-227ENST00000521387 ARHGEF12Q9NZN5 1544 aa13.22□□□□□ -0.29
CTNNA1-227ENST00000521387 FHOD3Q2V2M9 1422 aa13.22□□□□□ -0.29
CTNNA1-227ENST00000521387 NCBP3Q53F19 620 aaKnown RBP13.21□□□□□ -0.29
CTNNA1-227ENST00000521387 RICTORQ6R327 1708 aa13.19□□□□□ -0.3
CTNNA1-227ENST00000521387 DENND4BO75064 1496 aaPredicted RBP13.19□□□□□ -0.3
CTNNA1-227ENST00000521387 ARID3CA6NKF2 412 aa13.19□□□□□ -0.3
CTNNA1-227ENST00000521387 NCOA1Q15788 1441 aa13.19□□□□□ -0.3
CTNNA1-227ENST00000521387 SETD1BQ9UPS6 1966 aaKnown RBP13.18□□□□□ -0.3
CTNNA1-227ENST00000521387 ATP10BO94823 1461 aa13.18□□□□□ -0.3
CTNNA1-227ENST00000521387 SPINK5Q9NQ38 1064 aaPredicted RBP13.18□□□□□ -0.3
CTNNA1-227ENST00000521387 ZFYVE16Q7Z3T8 1539 aa13.15□□□□□ -0.3
CTNNA1-227ENST00000521387 PIP4K2BP78356 416 aa13.15□□□□□ -0.3
CTNNA1-227ENST00000521387 ZMYM4Q5VZL5 1548 aa13.14□□□□□ -0.31
CTNNA1-227ENST00000521387 DSG3P32926 999 aa13.14□□□□□ -0.31
CTNNA1-227ENST00000521387 U3KPZ7 1027 aaPredicted RBP13.14□□□□□ -0.31
CTNNA1-227ENST00000521387 SRCAPQ6ZRS2 3230 aa13.13□□□□□ -0.31
CTNNA1-227ENST00000521387 NPM3O75607 178 aaKnown RBP13.13□□□□□ -0.31
CTNNA1-227ENST00000521387 CAPN15O75808 1086 aa13.12□□□□□ -0.31
CTNNA1-227ENST00000521387 NCKAP5LQ9HCH0 1330 aa13.12□□□□□ -0.31
CTNNA1-227ENST00000521387 EFCAB5A4FU69 1503 aa13.1□□□□□ -0.31
CTNNA1-227ENST00000521387 MAGI2Q86UL8 1455 aa13.1□□□□□ -0.31
CTNNA1-227ENST00000521387 HECW1Q76N89 1606 aa13.08□□□□□ -0.32
CTNNA1-227ENST00000521387 POTEAQ6S8J7 498 aa13.07□□□□□ -0.32
CTNNA1-227ENST00000521387 ATP10AO60312 1499 aa13.07□□□□□ -0.32
CTNNA1-227ENST00000521387 CAMSAP1Q5T5Y3 1602 aa13.06□□□□□ -0.32
CTNNA1-227ENST00000521387 TRAPPC8Q9Y2L5 1435 aa13.05□□□□□ -0.32
CTNNA1-227ENST00000521387 TOM1O60784 492 aa13.05□□□□□ -0.32
CTNNA1-227ENST00000521387 ALKQ9UM73 1620 aa13.05□□□□□ -0.32
CTNNA1-227ENST00000521387 C9orf84Q5VXU9 1444 aa13.04□□□□□ -0.32
CTNNA1-227ENST00000521387 C3P01024 1663 aa13.03□□□□□ -0.32
CTNNA1-227ENST00000521387 RAPGEF2Q9Y4G8 1499 aa13.02□□□□□ -0.33
CTNNA1-227ENST00000521387 GOLGA3Q08378 1498 aa13.01□□□□□ -0.33
CTNNA1-227ENST00000521387 SCAPERQ9BY12 1400 aa12.97□□□□□ -0.33
CTNNA1-227ENST00000521387 PKD2Q13563 968 aa12.97□□□□□ -0.33
CTNNA1-227ENST00000521387 TCOF1Q13428 1488 aaKnown RBP12.97□□□□□ -0.33
CTNNA1-227ENST00000521387 P3H3Q8IVL6 736 aa12.94□□□□□ -0.34
CTNNA1-227ENST00000521387 UPF1Q92900 1129 aaKnown RBP eCLIP12.94□□□□□ -0.34
CTNNA1-227ENST00000521387 SETD1AO15047 1707 aaKnown RBP12.93□□□□□ -0.34
CTNNA1-227ENST00000521387 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.93□□□□□ -0.34
CTNNA1-227ENST00000521387 PLA2R1Q13018 1463 aa12.93□□□□□ -0.34
CTNNA1-227ENST00000521387 CFAP74Q9C0B2 1584 aa12.93□□□□□ -0.34
CTNNA1-227ENST00000521387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.92□□□□□ -0.34
CTNNA1-227ENST00000521387 HNRNPUL2Q1KMD3 747 aaKnown RBP12.92□□□□□ -0.34
CTNNA1-227ENST00000521387 CPS1P31327 1500 aa12.9□□□□□ -0.34
CTNNA1-227ENST00000521387 NPATQ14207 1427 aa12.89□□□□□ -0.35
CTNNA1-227ENST00000521387 PTPRKQ15262 1439 aa12.89□□□□□ -0.35
CTNNA1-227ENST00000521387 NUP153P49790 1475 aaKnown RBP12.89□□□□□ -0.35
CTNNA1-227ENST00000521387 SHANK2Q9UPX8 1470 aa12.89□□□□□ -0.35
CTNNA1-227ENST00000521387 SUPT5HO00267 1087 aaKnown RBP12.88□□□□□ -0.35
CTNNA1-227ENST00000521387 PLEKHD1A6NEE1 506 aa12.87□□□□□ -0.35
CTNNA1-227ENST00000521387 AFAP1Q8N556 730 aa12.87□□□□□ -0.35
CTNNA1-227ENST00000521387 CTTNBP2Q8WZ74 1663 aa12.86□□□□□ -0.35
CTNNA1-227ENST00000521387 AGLP35573 1532 aa12.86□□□□□ -0.35
CTNNA1-227ENST00000521387 ABCB7O75027 752 aa12.85□□□□□ -0.35
CTNNA1-227ENST00000521387 PLCH2O75038 1416 aa12.85□□□□□ -0.35
CTNNA1-227ENST00000521387 REREQ9P2R6 1566 aa12.85□□□□□ -0.35
CTNNA1-227ENST00000521387 DIP2CQ9Y2E4 1556 aa12.85□□□□□ -0.35
CTNNA1-227ENST00000521387 RAPGEF6Q8TEU7 1601 aa12.84□□□□□ -0.35
CTNNA1-227ENST00000521387 ZMYM3Q14202 1370 aa12.84□□□□□ -0.35
CTNNA1-227ENST00000521387 ESF1Q9H501 851 aaKnown RBP12.84□□□□□ -0.35
CTNNA1-227ENST00000521387 CNTLNQ9NXG0 1405 aa12.83□□□□□ -0.36
CTNNA1-227ENST00000521387 VWDEQ8N2E2 1590 aa12.81□□□□□ -0.36
CTNNA1-227ENST00000521387 ZNF142P52746 1687 aaPredicted RBP12.81□□□□□ -0.36
CTNNA1-227ENST00000521387 KDM5CP41229 1560 aa12.81□□□□□ -0.36
CTNNA1-227ENST00000521387 CEP170BQ9Y4F5 1589 aaPredicted RBP12.81□□□□□ -0.36
CTNNA1-227ENST00000521387 NEURL4Q96JN8 1562 aa12.8□□□□□ -0.36
CTNNA1-227ENST00000521387 FAM9AQ8IZU1 332 aaPredicted RBP12.79□□□□□ -0.36
CTNNA1-227ENST00000521387 ABCA6Q8N139 1617 aa12.79□□□□□ -0.36
CTNNA1-227ENST00000521387 MYO3AQ8NEV4 1616 aa12.79□□□□□ -0.36
CTNNA1-227ENST00000521387 ZNF518AQ6AHZ1 1483 aa12.78□□□□□ -0.36
CTNNA1-227ENST00000521387 EFCAB2Q5VUJ9 269 aa12.77□□□□□ -0.37
CTNNA1-227ENST00000521387 LRRC7Q96NW7 1537 aa12.76□□□□□ -0.37
CTNNA1-227ENST00000521387 MLH3Q9UHC1 1453 aa12.75□□□□□ -0.37
CTNNA1-227ENST00000521387 MROH2AA6NES4 1674 aa12.74□□□□□ -0.37
CTNNA1-227ENST00000521387 MYT1LQ9UL68 1186 aa12.74□□□□□ -0.37
CTNNA1-227ENST00000521387 SUPT6HQ7KZ85 1726 aaKnown RBP12.74□□□□□ -0.37
CTNNA1-227ENST00000521387 DNMT1P26358 1616 aaKnown RBP12.73□□□□□ -0.37
CTNNA1-227ENST00000521387 SAMD9Q5K651 1589 aa12.73□□□□□ -0.37
CTNNA1-227ENST00000521387 STRCP1A6NGW2 1772 aa12.72□□□□□ -0.37
CTNNA1-227ENST00000521387 SLC4A2P04920 1241 aa12.71□□□□□ -0.37
CTNNA1-227ENST00000521387 A2ML1A8K2U0 1454 aa12.71□□□□□ -0.38
CTNNA1-227ENST00000521387 TRIM52Q96A61 297 aa12.7□□□□□ -0.38
CTNNA1-227ENST00000521387 PRXQ9BXM0 1461 aa12.7□□□□□ -0.38
CTNNA1-227ENST00000521387 RNF17Q9BXT8 1623 aaKnown RBP12.69□□□□□ -0.38
CTNNA1-227ENST00000521387 FAM135BQ49AJ0 1406 aa12.68□□□□□ -0.38
CTNNA1-227ENST00000521387 POLR1AO95602 1720 aaPredicted RBP12.67□□□□□ -0.38
CTNNA1-227ENST00000521387 MED14O60244 1454 aa12.65□□□□□ -0.38
CTNNA1-227ENST00000521387 NPHP4O75161 1426 aaPredicted RBP12.65□□□□□ -0.38
CTNNA1-227ENST00000521387 CLTCQ00610 1675 aaKnown RBP12.65□□□□□ -0.38
CTNNA1-227ENST00000521387 ANKLE2Q86XL3 938 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms