RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 PTPRKQ15262 1439 aa13.89□□□□□ -0.19
MCF2-209ENST00000520602 SALL2Q9Y467 1007 aaPredicted RBP13.89□□□□□ -0.19
MCF2-209ENST00000520602 TMC1Q8TDI8 760 aa13.88□□□□□ -0.19
MCF2-209ENST00000520602 WDR97A6NE52 1622 aa13.88□□□□□ -0.19
MCF2-209ENST00000520602 SUPT16HQ9Y5B9 1047 aaKnown RBP13.88□□□□□ -0.19
MCF2-209ENST00000520602 CCER2I3L3R5 266 aa13.87□□□□□ -0.19
MCF2-209ENST00000520602 SUPT6HQ7KZ85 1726 aaKnown RBP13.87□□□□□ -0.19
MCF2-209ENST00000520602 GRIN2AQ12879 1464 aa13.87□□□□□ -0.19
MCF2-209ENST00000520602 HECW1Q76N89 1606 aa13.87□□□□□ -0.19
MCF2-209ENST00000520602 PLB1Q6P1J6 1458 aa13.85□□□□□ -0.19
MCF2-209ENST00000520602 CTTNBP2Q8WZ74 1663 aa13.85□□□□□ -0.19
MCF2-209ENST00000520602 ERICH6Q7L0X2 663 aa13.84□□□□□ -0.19
MCF2-209ENST00000520602 MIA2Q96PC5 1412 aa13.84□□□□□ -0.19
MCF2-209ENST00000520602 MAPKBP1O60336 1514 aa13.83□□□□□ -0.2
MCF2-209ENST00000520602 TROQ12816 1431 aaPredicted RBP13.82□□□□□ -0.2
MCF2-209ENST00000520602 EFCAB2Q5VUJ9 269 aa13.82□□□□□ -0.2
MCF2-209ENST00000520602 ABCA5Q8WWZ7 1642 aa13.82□□□□□ -0.2
MCF2-209ENST00000520602 PTPN23Q9H3S7 1636 aa13.81□□□□□ -0.2
MCF2-209ENST00000520602 SENP3Q9H4L4 574 aaPredicted RBP13.81□□□□□ -0.2
MCF2-209ENST00000520602 SYNJ2O15056 1496 aa13.8□□□□□ -0.2
MCF2-209ENST00000520602 THOC2Q8NI27 1593 aaKnown RBP13.79□□□□□ -0.2
MCF2-209ENST00000520602 DAPK1P53355 1430 aa13.79□□□□□ -0.2
MCF2-209ENST00000520602 CFAP43Q8NDM7 1665 aa13.78□□□□□ -0.2
MCF2-209ENST00000520602 NBPF8Q3BBV2 869 aa13.78□□□□□ -0.2
MCF2-209ENST00000520602 ANKRD50Q9ULJ7 1429 aa13.77□□□□□ -0.2
MCF2-209ENST00000520602 MAGI1Q96QZ7 1491 aaPredicted RBP13.77□□□□□ -0.2
MCF2-209ENST00000520602 RSPH4AQ5TD94 716 aa13.77□□□□□ -0.21
MCF2-209ENST00000520602 WASHC2AQ641Q2 1341 aa13.77□□□□□ -0.21
MCF2-209ENST00000520602 ADAMTS12P58397 1594 aa13.76□□□□□ -0.21
MCF2-209ENST00000520602 KIF15Q9NS87 1388 aa13.76□□□□□ -0.21
MCF2-209ENST00000520602 ABCC5O15440 1437 aa13.76□□□□□ -0.21
MCF2-209ENST00000520602 TARBP1Q13395 1621 aaKnown RBP13.75□□□□□ -0.21
MCF2-209ENST00000520602 UGGT2Q9NYU1 1516 aa13.74□□□□□ -0.21
MCF2-209ENST00000520602 ST20-MTHFSA0A0A6YYL1 179 aa13.73□□□□□ -0.21
MCF2-209ENST00000520602 NUP153P49790 1475 aaKnown RBP13.73□□□□□ -0.21
MCF2-209ENST00000520602 SPAG9O60271 1321 aaKnown RBP13.72□□□□□ -0.21
MCF2-209ENST00000520602 ROCK2O75116 1388 aaKnown RBP13.71□□□□□ -0.21
MCF2-209ENST00000520602 SAMD9Q5K651 1589 aa13.71□□□□□ -0.21
MCF2-209ENST00000520602 PRKRIP1Q9H875 184 aaPredicted RBP13.71□□□□□ -0.21
MCF2-209ENST00000520602 KIF3BO15066 747 aa13.71□□□□□ -0.22
MCF2-209ENST00000520602 CC2D1BQ5T0F9 858 aaKnown RBP13.7□□□□□ -0.22
MCF2-209ENST00000520602 ARHGEF11O15085 1522 aa13.7□□□□□ -0.22
MCF2-209ENST00000520602 USP47Q96K76 1375 aa13.69□□□□□ -0.22
MCF2-209ENST00000520602 KIF7Q2M1P5 1343 aa13.69□□□□□ -0.22
MCF2-209ENST00000520602 ROCK1Q13464 1354 aa13.69□□□□□ -0.22
MCF2-209ENST00000520602 MAGI3Q5TCQ9 1506 aa13.69□□□□□ -0.22
MCF2-209ENST00000520602 C9orf84Q5VXU9 1444 aa13.69□□□□□ -0.22
MCF2-209ENST00000520602 PBRM1Q86U86 1689 aa13.69□□□□□ -0.22
MCF2-209ENST00000520602 DISP1Q96F81 1524 aa13.68□□□□□ -0.22
MCF2-209ENST00000520602 EIF4G3O43432 1585 aaKnown RBP13.68□□□□□ -0.22
MCF2-209ENST00000520602 GGT6Q6P531 493 aa13.68□□□□□ -0.22
MCF2-209ENST00000520602 CCDC7Q96M83 1385 aa13.68□□□□□ -0.22
MCF2-209ENST00000520602 CAMSAP2Q08AD1 1489 aa13.68□□□□□ -0.22
MCF2-209ENST00000520602 WDR62O43379 1518 aa13.68□□□□□ -0.22
MCF2-209ENST00000520602 AFAP1Q8N556 730 aa13.68□□□□□ -0.22
MCF2-209ENST00000520602 ANKRD30BQ9BXX2 1392 aa13.67□□□□□ -0.22
MCF2-209ENST00000520602 C11orf95C9JLR9 678 aaPredicted RBP13.67□□□□□ -0.22
MCF2-209ENST00000520602 CCDC144AA2RUR9 1427 aa13.66□□□□□ -0.22
MCF2-209ENST00000520602 NCOA1Q15788 1441 aa13.66□□□□□ -0.22
MCF2-209ENST00000520602 KIAA0556O60303 1618 aa13.66□□□□□ -0.22
MCF2-209ENST00000520602 GPATCH8Q9UKJ3 1502 aaKnown RBP13.65□□□□□ -0.22
MCF2-209ENST00000520602 AKNAQ7Z591 1439 aa13.65□□□□□ -0.22
MCF2-209ENST00000520602 STAG3Q9UJ98 1225 aa13.65□□□□□ -0.22
MCF2-209ENST00000520602 RAPGEF6Q8TEU7 1601 aa13.65□□□□□ -0.22
MCF2-209ENST00000520602 KIAA1107Q9UPP5 1409 aa13.64□□□□□ -0.23
MCF2-209ENST00000520602 TMF1P82094 1093 aa13.64□□□□□ -0.23
MCF2-209ENST00000520602 ARHGAP5Q13017 1502 aa13.63□□□□□ -0.23
MCF2-209ENST00000520602 KNSTRNQ9Y448 316 aa13.63□□□□□ -0.23
MCF2-209ENST00000520602 CCDC184Q52MB2 194 aa13.63□□□□□ -0.23
MCF2-209ENST00000520602 ATP10BO94823 1461 aa13.63□□□□□ -0.23
MCF2-209ENST00000520602 KANK1Q14678 1352 aa13.62□□□□□ -0.23
MCF2-209ENST00000520602 WDR43Q15061 677 aaKnown RBP eCLIP13.62□□□□□ -0.23
MCF2-209ENST00000520602 CCDC136Q96JN2 1154 aa13.62□□□□□ -0.23
MCF2-209ENST00000520602 TCOF1Q13428 1488 aaKnown RBP13.61□□□□□ -0.23
MCF2-209ENST00000520602 CNTLNQ9NXG0 1405 aa13.59□□□□□ -0.23
MCF2-209ENST00000520602 OSCARQ8IYS5 282 aa13.59□□□□□ -0.23
MCF2-209ENST00000520602 NBPF1Q3BBV0 1214 aa13.59□□□□□ -0.23
MCF2-209ENST00000520602 B4GALNT3Q6L9W6 998 aa13.59□□□□□ -0.23
MCF2-209ENST00000520602 PLPPR3Q6T4P5 718 aa13.58□□□□□ -0.24
MCF2-209ENST00000520602 CDCA8Q53HL2 280 aa13.58□□□□□ -0.24
MCF2-209ENST00000520602 NUP160Q12769 1436 aa13.56□□□□□ -0.24
MCF2-209ENST00000520602 ESF1Q9H501 851 aaKnown RBP13.56□□□□□ -0.24
MCF2-209ENST00000520602 RPRD2Q5VT52 1461 aaKnown RBP13.56□□□□□ -0.24
MCF2-209ENST00000520602 CEP170Q5SW79 1584 aa13.55□□□□□ -0.24
MCF2-209ENST00000520602 KIF14Q15058 1648 aa13.54□□□□□ -0.24
MCF2-209ENST00000520602 KTN1Q86UP2 1357 aaKnown RBP13.54□□□□□ -0.24
MCF2-209ENST00000520602 TNNT2P45379 298 aaPredicted RBP13.54□□□□□ -0.24
MCF2-209ENST00000520602 NUTM2DQ5VT03 806 aaPredicted RBP13.54□□□□□ -0.24
MCF2-209ENST00000520602 PANK3Q9H999 370 aa13.54□□□□□ -0.24
MCF2-209ENST00000520602 PPP4R2Q9NY27 417 aa13.54□□□□□ -0.24
MCF2-209ENST00000520602 RALBP1Q15311 655 aa13.54□□□□□ -0.24
MCF2-209ENST00000520602 TSHZ2Q9NRE2 1034 aa13.53□□□□□ -0.24
MCF2-209ENST00000520602 CCDC141Q6ZP82 1450 aa13.52□□□□□ -0.25
MCF2-209ENST00000520602 SAFB2Q14151 953 aaKnown RBP eCLIP13.52□□□□□ -0.25
MCF2-209ENST00000520602 CYB5RLQ6IPT4 315 aa13.52□□□□□ -0.25
MCF2-209ENST00000520602 CANXP27824 592 aaKnown RBP13.51□□□□□ -0.25
MCF2-209ENST00000520602 WASHC2CQ9Y4E1 1318 aa13.5□□□□□ -0.25
MCF2-209ENST00000520602 MLECQ14165 292 aa13.5□□□□□ -0.25
MCF2-209ENST00000520602 NLRP13Q86W25 1043 aa13.49□□□□□ -0.25
MCF2-209ENST00000520602 MYT1Q01538 1121 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms