RNA–Protein interactions for RNA: ENST00000520399.1

ERGIC1-208, Transcript of endoplasmic reticulum-golgi intermediate compartment 1, humanhuman

TSL 1 (best)

Gene ERGIC1, Length 5,687 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERGIC1-208ENST00000520399 NEUROD2Q15784 382 aa15.52■□□□□ 0.07
ERGIC1-208ENST00000520399 DCAF11Q8TEB1 546 aa15.52■□□□□ 0.07
ERGIC1-208ENST00000520399 HAP1P54257 671 aaPredicted RBP15.52■□□□□ 0.07
ERGIC1-208ENST00000520399 TPRNQ4KMQ1 711 aa15.51■□□□□ 0.07
ERGIC1-208ENST00000520399 WIZO95785 1651 aa15.49■□□□□ 0.07
ERGIC1-208ENST00000520399 PRM3Q9NNZ6 103 aa15.49■□□□□ 0.07
ERGIC1-208ENST00000520399 CHAF1AQ13111 956 aaPredicted RBP15.48■□□□□ 0.07
ERGIC1-208ENST00000520399 CARMIL2Q6F5E8 1435 aa15.48■□□□□ 0.07
ERGIC1-208ENST00000520399 PDS5BQ9NTI5 1447 aa15.48■□□□□ 0.07
ERGIC1-208ENST00000520399 PLCB2Q00722 1185 aa15.47■□□□□ 0.07
ERGIC1-208ENST00000520399 CHMP4BQ9H444 224 aaKnown RBP15.47■□□□□ 0.07
ERGIC1-208ENST00000520399 MS4A1P11836 297 aa15.46■□□□□ 0.07
ERGIC1-208ENST00000520399 FMN1Q68DA7 1419 aa15.46■□□□□ 0.07
ERGIC1-208ENST00000520399 NPHP1O15259 732 aa15.46■□□□□ 0.07
ERGIC1-208ENST00000520399 CCER2I3L3R5 266 aa15.45■□□□□ 0.06
ERGIC1-208ENST00000520399 FRAT1Q92837 279 aaPredicted RBP15.45■□□□□ 0.06
ERGIC1-208ENST00000520399 HSPA5P11021 654 aaKnown RBP15.44■□□□□ 0.06
ERGIC1-208ENST00000520399 MSNP26038 577 aaKnown RBP15.44■□□□□ 0.06
ERGIC1-208ENST00000520399 KANK4Q5T7N3 995 aaPredicted RBP15.44■□□□□ 0.06
ERGIC1-208ENST00000520399 U2SURPO15042 1029 aaKnown RBP15.44■□□□□ 0.06
ERGIC1-208ENST00000520399 KIAA2012Q0VF49 1180 aa15.43■□□□□ 0.06
ERGIC1-208ENST00000520399 PDE4CQ08493 712 aa15.42■□□□□ 0.06
ERGIC1-208ENST00000520399 USP35Q9P2H5 1018 aa15.42■□□□□ 0.06
ERGIC1-208ENST00000520399 HDGFP51858 240 aaKnown RBP15.41■□□□□ 0.06
ERGIC1-208ENST00000520399 PKD2Q13563 968 aa15.4■□□□□ 0.06
ERGIC1-208ENST00000520399 NOC3LQ8WTT2 800 aaKnown RBP15.4■□□□□ 0.06
ERGIC1-208ENST00000520399 TAOK2Q9UL54 1235 aa15.4■□□□□ 0.06
ERGIC1-208ENST00000520399 RGS3P49796 1198 aa15.4■□□□□ 0.06
ERGIC1-208ENST00000520399 RAB3GAP2Q9H2M9 1393 aa15.39■□□□□ 0.05
ERGIC1-208ENST00000520399 FGD1P98174 961 aa15.39■□□□□ 0.05
ERGIC1-208ENST00000520399 KTN1Q86UP2 1357 aaKnown RBP15.39■□□□□ 0.05
ERGIC1-208ENST00000520399 APPP05067 770 aa15.39■□□□□ 0.05
ERGIC1-208ENST00000520399 LMOD2Q6P5Q4 547 aa15.38■□□□□ 0.05
ERGIC1-208ENST00000520399 MORC1Q86VD1 984 aa15.38■□□□□ 0.05
ERGIC1-208ENST00000520399 SRPK2P78362 688 aaKnown RBP15.38■□□□□ 0.05
ERGIC1-208ENST00000520399 RAPGEF2Q9Y4G8 1499 aa15.37■□□□□ 0.05
ERGIC1-208ENST00000520399 GOLGA2Q08379 1002 aa15.37■□□□□ 0.05
ERGIC1-208ENST00000520399 ANKRD30AQ9BXX3 1397 aa15.36■□□□□ 0.05
ERGIC1-208ENST00000520399 ROCK2O75116 1388 aaKnown RBP15.36■□□□□ 0.05
ERGIC1-208ENST00000520399 MPHOSPH9Q99550 1183 aa15.35■□□□□ 0.05
ERGIC1-208ENST00000520399 TDRD9Q8NDG6 1382 aaKnown RBP15.35■□□□□ 0.05
ERGIC1-208ENST00000520399 FOXD1Q16676 465 aa15.35■□□□□ 0.05
ERGIC1-208ENST00000520399 GOLGA6L4A6NEF3 574 aa15.35■□□□□ 0.05
ERGIC1-208ENST00000520399 OS9Q13438 667 aaPredicted RBP15.34■□□□□ 0.05
ERGIC1-208ENST00000520399 NAP1L2Q9ULW6 460 aaPredicted RBP15.34■□□□□ 0.05
ERGIC1-208ENST00000520399 B4GALNT3Q6L9W6 998 aa15.34■□□□□ 0.05
ERGIC1-208ENST00000520399 MLECQ14165 292 aa15.32■□□□□ 0.04
ERGIC1-208ENST00000520399 HSP90AB1P08238 724 aaKnown RBP15.32■□□□□ 0.04
ERGIC1-208ENST00000520399 NUP155O75694 1391 aa15.32■□□□□ 0.04
ERGIC1-208ENST00000520399 DRC7Q8IY82 874 aa15.32■□□□□ 0.04
ERGIC1-208ENST00000520399 SMARCA4P51532 1647 aa15.31■□□□□ 0.04
ERGIC1-208ENST00000520399 GGT6Q6P531 493 aa15.3■□□□□ 0.04
ERGIC1-208ENST00000520399 HDGFL2Q7Z4V5 671 aaPredicted RBP15.3■□□□□ 0.04
ERGIC1-208ENST00000520399 EIF3AQ14152 1382 aaKnown RBP15.3■□□□□ 0.04
ERGIC1-208ENST00000520399 SAFB2Q14151 953 aaKnown RBP eCLIP15.3■□□□□ 0.04
ERGIC1-208ENST00000520399 FANCIQ9NVI1 1328 aa15.3■□□□□ 0.04
ERGIC1-208ENST00000520399 FHOD3Q2V2M9 1422 aa15.3■□□□□ 0.04
ERGIC1-208ENST00000520399 KCNJ4P48050 445 aa15.3■□□□□ 0.04
ERGIC1-208ENST00000520399 RALBP1Q15311 655 aa15.3■□□□□ 0.04
ERGIC1-208ENST00000520399 CCDC18Q5T9S5 1454 aa15.29■□□□□ 0.04
ERGIC1-208ENST00000520399 CADPSQ9ULU8 1353 aa15.29■□□□□ 0.04
ERGIC1-208ENST00000520399 EFCAB2Q5VUJ9 269 aa15.28■□□□□ 0.04
ERGIC1-208ENST00000520399 CALRP27797 417 aaKnown RBP15.28■□□□□ 0.04
ERGIC1-208ENST00000520399 ISY1Q9ULR0 285 aaKnown RBP15.27■□□□□ 0.03
ERGIC1-208ENST00000520399 STK26Q9P289 416 aa15.27■□□□□ 0.03
ERGIC1-208ENST00000520399 HSCBQ8IWL3 235 aa15.26■□□□□ 0.03
ERGIC1-208ENST00000520399 RTF1Q92541 710 aaKnown RBP15.25■□□□□ 0.03
ERGIC1-208ENST00000520399 IPO9Q96P70 1041 aaKnown RBP15.25■□□□□ 0.03
ERGIC1-208ENST00000520399 SOX12O15370 315 aa15.24■□□□□ 0.03
ERGIC1-208ENST00000520399 ATAD2BQ9ULI0 1458 aa15.24■□□□□ 0.03
ERGIC1-208ENST00000520399 GOLGA6L1Q8N7Z2 621 aa15.23■□□□□ 0.03
ERGIC1-208ENST00000520399 CFAP44Q96MT7 982 aa15.23■□□□□ 0.03
ERGIC1-208ENST00000520399 GNL2Q13823 731 aaKnown RBP15.23■□□□□ 0.03
ERGIC1-208ENST00000520399 TRHP20396 242 aaPredicted RBP15.23■□□□□ 0.03
ERGIC1-208ENST00000520399 MCCP23508 829 aa15.22■□□□□ 0.03
ERGIC1-208ENST00000520399 MAP7D2Q96T17 732 aa15.22■□□□□ 0.03
ERGIC1-208ENST00000520399 IPO8O15397 1037 aaKnown RBP15.21■□□□□ 0.03
ERGIC1-208ENST00000520399 CALD1Q05682 793 aaKnown RBP15.21■□□□□ 0.03
ERGIC1-208ENST00000520399 KRI1Q8N9T8 703 aaKnown RBP15.21■□□□□ 0.03
ERGIC1-208ENST00000520399 HNRNPMP52272 730 aaKnown RBP eCLIP15.21■□□□□ 0.03
ERGIC1-208ENST00000520399 GSE1Q14687 1217 aa15.2■□□□□ 0.02
ERGIC1-208ENST00000520399 RCAN3Q9UKA8 241 aa15.2■□□□□ 0.02
ERGIC1-208ENST00000520399 RSPH4AQ5TD94 716 aa15.19■□□□□ 0.02
ERGIC1-208ENST00000520399 ARID3AQ99856 593 aa15.18■□□□□ 0.02
ERGIC1-208ENST00000520399 GOLGA6L3A6NEY3 463 aa15.17■□□□□ 0.02
ERGIC1-208ENST00000520399 U2AF1L5P0DN76 240 aaPredicted RBP15.17■□□□□ 0.02
ERGIC1-208ENST00000520399 U2AF1Q01081 240 aaKnown RBP eCLIP15.17■□□□□ 0.02
ERGIC1-208ENST00000520399 SETQ01105 290 aaPredicted RBP15.17■□□□□ 0.02
ERGIC1-208ENST00000520399 MTERF4Q7Z6M4 381 aaKnown RBP15.16■□□□□ 0.02
ERGIC1-208ENST00000520399 KIF3BO15066 747 aa15.16■□□□□ 0.02
ERGIC1-208ENST00000520399 RRP9O43818 475 aaKnown RBP15.16■□□□□ 0.02
ERGIC1-208ENST00000520399 L3MBTL2Q969R5 705 aa15.16■□□□□ 0.02
ERGIC1-208ENST00000520399 FANCD2Q9BXW9 1451 aa15.15■□□□□ 0.02
ERGIC1-208ENST00000520399 SPAG9O60271 1321 aaKnown RBP15.15■□□□□ 0.02
ERGIC1-208ENST00000520399 TPM4P67936 248 aa15.15■□□□□ 0.02
ERGIC1-208ENST00000520399 RWDD1Q9H446 243 aaPredicted RBP15.14■□□□□ 0.01
ERGIC1-208ENST00000520399 ITPRIPQ8IWB1 547 aa15.14■□□□□ 0.01
ERGIC1-208ENST00000520399 CEP89Q96ST8 783 aa15.13■□□□□ 0.01
ERGIC1-208ENST00000520399 PAK3O75914 559 aaPredicted RBP15.12■□□□□ 0.01
ERGIC1-208ENST00000520399 TERF2IPQ9NYB0 399 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms