RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 PRKRIP1Q9H875 184 aaPredicted RBP15.24■□□□□ 0.03
SYNPO-204ENST00000519664 FGD5Q6ZNL6 1462 aa15.23■□□□□ 0.03
SYNPO-204ENST00000519664 STK26Q9P289 416 aa15.23■□□□□ 0.03
SYNPO-204ENST00000519664 RCAN3Q9UKA8 241 aa15.23■□□□□ 0.03
SYNPO-204ENST00000519664 MLECQ14165 292 aa15.23■□□□□ 0.03
SYNPO-204ENST00000519664 ANKRD30AQ9BXX3 1397 aa15.22■□□□□ 0.03
SYNPO-204ENST00000519664 SOX12O15370 315 aa15.21■□□□□ 0.03
SYNPO-204ENST00000519664 SYNJ1O43426 1573 aa15.21■□□□□ 0.03
SYNPO-204ENST00000519664 ARID4BQ4LE39 1312 aaPredicted RBP15.21■□□□□ 0.02
SYNPO-204ENST00000519664 NUTM2DQ5VT03 806 aaPredicted RBP15.21■□□□□ 0.02
SYNPO-204ENST00000519664 DDRGK1Q96HY6 314 aa15.2■□□□□ 0.02
SYNPO-204ENST00000519664 CARMIL2Q6F5E8 1435 aa15.2■□□□□ 0.02
SYNPO-204ENST00000519664 KTN1Q86UP2 1357 aaKnown RBP15.2■□□□□ 0.02
SYNPO-204ENST00000519664 CCDC18Q5T9S5 1454 aa15.19■□□□□ 0.02
SYNPO-204ENST00000519664 MAPK8IP3Q9UPT6 1336 aa15.19■□□□□ 0.02
SYNPO-204ENST00000519664 PRKCSHP14314 528 aaPredicted RBP15.19■□□□□ 0.02
SYNPO-204ENST00000519664 KIF3BO15066 747 aa15.19■□□□□ 0.02
SYNPO-204ENST00000519664 MORC1Q86VD1 984 aa15.19■□□□□ 0.02
SYNPO-204ENST00000519664 MYH16Q9H6N6 1097 aa15.19■□□□□ 0.02
SYNPO-204ENST00000519664 SRPK2P78362 688 aaKnown RBP15.18■□□□□ 0.02
SYNPO-204ENST00000519664 CCDC146Q8IYE0 955 aa15.18■□□□□ 0.02
SYNPO-204ENST00000519664 ANP32BQ92688 251 aaKnown RBP15.17■□□□□ 0.02
SYNPO-204ENST00000519664 NUDCQ9Y266 331 aa15.17■□□□□ 0.02
SYNPO-204ENST00000519664 BECN1Q14457 450 aa15.16■□□□□ 0.02
SYNPO-204ENST00000519664 EFCAB2Q5VUJ9 269 aa15.16■□□□□ 0.02
SYNPO-204ENST00000519664 PLIN1O60240 522 aa15.15■□□□□ 0.02
SYNPO-204ENST00000519664 RALBP1Q15311 655 aa15.14■□□□□ 0.01
SYNPO-204ENST00000519664 SPRYD3Q8NCJ5 442 aa15.14■□□□□ 0.01
SYNPO-204ENST00000519664 TPRNQ4KMQ1 711 aa15.13■□□□□ 0.01
SYNPO-204ENST00000519664 NLRP13Q86W25 1043 aa15.13■□□□□ 0.01
SYNPO-204ENST00000519664 FGD6Q6ZV73 1430 aa15.12■□□□□ 0.01
SYNPO-204ENST00000519664 PANK3Q9H999 370 aa15.12■□□□□ 0.01
SYNPO-204ENST00000519664 ERICH6BQ5W0A0 696 aa15.12■□□□□ 0.01
SYNPO-204ENST00000519664 LRRC9Q6ZRR7 1453 aa15.12■□□□□ 0.01
SYNPO-204ENST00000519664 U2AF1L5P0DN76 240 aaPredicted RBP15.11■□□□□ 0.01
SYNPO-204ENST00000519664 U2AF1Q01081 240 aaKnown RBP eCLIP15.11■□□□□ 0.01
SYNPO-204ENST00000519664 CLUAP1Q96AJ1 413 aa15.11■□□□□ 0.01
SYNPO-204ENST00000519664 WASHC2AQ641Q2 1341 aa15.1■□□□□ 0.01
SYNPO-204ENST00000519664 KANK1Q14678 1352 aa15.09■□□□□ 0.01
SYNPO-204ENST00000519664 USP47Q96K76 1375 aa15.09■□□□□ 0.01
SYNPO-204ENST00000519664 NCAPD3P42695 1498 aa15.09■□□□□ 0.01
SYNPO-204ENST00000519664 GAPVD1Q14C86 1478 aa15.09■□□□□ 0.01
SYNPO-204ENST00000519664 AQRO60306 1485 aaKnown RBP eCLIP15.08■□□□□ 0.01
SYNPO-204ENST00000519664 LMOD2Q6P5Q4 547 aa15.08■□□□□ 0
SYNPO-204ENST00000519664 TRAK1Q9UPV9 953 aa15.08■□□□□ 0
SYNPO-204ENST00000519664 RRP7AQ9Y3A4 280 aaKnown RBP15.07■□□□□ 0
SYNPO-204ENST00000519664 KIF7Q2M1P5 1343 aa15.07■□□□□ 0
SYNPO-204ENST00000519664 NCLP19338 710 aaKnown RBP15.07■□□□□ 0
SYNPO-204ENST00000519664 EXOC6Q8TAG9 804 aa15.07■□□□□ 0
SYNPO-204ENST00000519664 SPAG9O60271 1321 aaKnown RBP15.06■□□□□ 0
SYNPO-204ENST00000519664 A0A0G2JS52 829 aa15.06■□□□□ 0
SYNPO-204ENST00000519664 PRXQ9BXM0 1461 aa15.05■□□□□ 0
SYNPO-204ENST00000519664 MYOM3Q5VTT5 1437 aa15.04■□□□□ -0
SYNPO-204ENST00000519664 GOLGA2Q08379 1002 aa15.04■□□□□ -0
SYNPO-204ENST00000519664 NESP48681 1621 aa15.04■□□□□ -0
SYNPO-204ENST00000519664 APBB1O00213 710 aa15.04■□□□□ -0
SYNPO-204ENST00000519664 CCDC184Q52MB2 194 aa15.04■□□□□ -0
SYNPO-204ENST00000519664 BCL2L13Q9BXK5 485 aa15.03■□□□□ -0
SYNPO-204ENST00000519664 SLKQ9H2G2 1235 aaPredicted RBP15.03■□□□□ -0
SYNPO-204ENST00000519664 RRBP1Q9P2E9 1410 aaKnown RBP15.03■□□□□ -0
SYNPO-204ENST00000519664 ZBED9Q6R2W3 1325 aa15.02■□□□□ -0
SYNPO-204ENST00000519664 UACAQ9BZF9 1416 aa15.02■□□□□ -0
SYNPO-204ENST00000519664 MYBBP1AQ9BQG0 1328 aaKnown RBP15.02□□□□□ -0.01
SYNPO-204ENST00000519664 SLC4A3P48751 1232 aa15.01□□□□□ -0.01
SYNPO-204ENST00000519664 NBPF8Q3BBV2 869 aa15.01□□□□□ -0.01
SYNPO-204ENST00000519664 DNAJC5BQ9UF47 199 aa15.01□□□□□ -0.01
SYNPO-204ENST00000519664 CCDC7Q96M83 1385 aa15.01□□□□□ -0.01
SYNPO-204ENST00000519664 CCDC144AA2RUR9 1427 aa15.01□□□□□ -0.01
SYNPO-204ENST00000519664 TCERG1O14776 1098 aaKnown RBP15□□□□□ -0.01
SYNPO-204ENST00000519664 NCOA2Q15596 1464 aa15□□□□□ -0.01
SYNPO-204ENST00000519664 CFTRP13569 1480 aa14.99□□□□□ -0.01
SYNPO-204ENST00000519664 KIF15Q9NS87 1388 aa14.99□□□□□ -0.01
SYNPO-204ENST00000519664 NUTM2FA1L443 756 aa14.99□□□□□ -0.01
SYNPO-204ENST00000519664 PTPRGP23470 1445 aa14.99□□□□□ -0.01
SYNPO-204ENST00000519664 IPO9Q96P70 1041 aaKnown RBP14.98□□□□□ -0.01
SYNPO-204ENST00000519664 CUX1P39880 1505 aa14.98□□□□□ -0.01
SYNPO-204ENST00000519664 RSPH4AQ5TD94 716 aa14.98□□□□□ -0.01
SYNPO-204ENST00000519664 APAF1O14727 1248 aa14.97□□□□□ -0.01
SYNPO-204ENST00000519664 WASHC2CQ9Y4E1 1318 aa14.97□□□□□ -0.01
SYNPO-204ENST00000519664 ITPRIPQ8IWB1 547 aa14.96□□□□□ -0.01
SYNPO-204ENST00000519664 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.96□□□□□ -0.01
SYNPO-204ENST00000519664 CASKIN1Q8WXD9 1431 aa14.96□□□□□ -0.01
SYNPO-204ENST00000519664 CRBNQ96SW2 442 aa14.95□□□□□ -0.02
SYNPO-204ENST00000519664 RRP1P56182 461 aaKnown RBP14.95□□□□□ -0.02
SYNPO-204ENST00000519664 TRIM44Q96DX7 344 aaPredicted RBP14.95□□□□□ -0.02
SYNPO-204ENST00000519664 PDE3BQ13370 1112 aa14.94□□□□□ -0.02
SYNPO-204ENST00000519664 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.94□□□□□ -0.02
SYNPO-204ENST00000519664 ERICH3Q5RHP9 1530 aa14.94□□□□□ -0.02
SYNPO-204ENST00000519664 ELL2O00472 640 aaPredicted RBP14.93□□□□□ -0.02
SYNPO-204ENST00000519664 HSP90AB1P08238 724 aaKnown RBP14.93□□□□□ -0.02
SYNPO-204ENST00000519664 NBPF1Q3BBV0 1214 aa14.93□□□□□ -0.02
SYNPO-204ENST00000519664 GOLGA6L22H0YM25 854 aa14.93□□□□□ -0.02
SYNPO-204ENST00000519664 CDCA7LQ96GN5 454 aa14.93□□□□□ -0.02
SYNPO-204ENST00000519664 PDE4AP27815 886 aa14.93□□□□□ -0.02
SYNPO-204ENST00000519664 GZF1Q9H116 711 aaPredicted RBP14.93□□□□□ -0.02
SYNPO-204ENST00000519664 SMC4Q9NTJ3 1288 aa14.93□□□□□ -0.02
SYNPO-204ENST00000519664 MS4A1P11836 297 aa14.92□□□□□ -0.02
SYNPO-204ENST00000519664 HDGFL2Q7Z4V5 671 aaPredicted RBP14.92□□□□□ -0.02
SYNPO-204ENST00000519664 COG6Q9Y2V7 657 aa14.91□□□□□ -0.02
SYNPO-204ENST00000519664 WDR97A6NE52 1622 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms