RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 FAM69CQ0P6D2 419 aa5.48□□□□□ -1.53
VCAN-209ENST00000513016 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.48□□□□□ -1.53
VCAN-209ENST00000513016 EVA1CP58658 441 aa5.48□□□□□ -1.53
VCAN-209ENST00000513016 BECN1Q14457 450 aa5.47□□□□□ -1.53
VCAN-209ENST00000513016 FGD1P98174 961 aa5.47□□□□□ -1.53
VCAN-209ENST00000513016 ARHGAP35Q9NRY4 1499 aa5.47□□□□□ -1.53
VCAN-209ENST00000513016 SAFB2Q14151 953 aaKnown RBP eCLIP5.47□□□□□ -1.53
VCAN-209ENST00000513016 GOLGA6L22H0YM25 854 aa5.47□□□□□ -1.53
VCAN-209ENST00000513016 PKD2Q13563 968 aa5.46□□□□□ -1.53
VCAN-209ENST00000513016 NEUROD2Q15784 382 aa5.46□□□□□ -1.53
VCAN-209ENST00000513016 CCDC18Q5T9S5 1454 aa5.46□□□□□ -1.54
VCAN-209ENST00000513016 TNNT2P45379 298 aaPredicted RBP5.46□□□□□ -1.54
VCAN-209ENST00000513016 KCNJ4P48050 445 aa5.46□□□□□ -1.54
VCAN-209ENST00000513016 PHF23Q9BUL5 403 aaPredicted RBP5.46□□□□□ -1.54
VCAN-209ENST00000513016 UACAQ9BZF9 1416 aa5.46□□□□□ -1.54
VCAN-209ENST00000513016 ANP32EQ9BTT0 268 aa5.46□□□□□ -1.54
VCAN-209ENST00000513016 ISY1Q9ULR0 285 aaKnown RBP5.46□□□□□ -1.54
VCAN-209ENST00000513016 VGFO15240 615 aaPredicted RBP5.46□□□□□ -1.54
VCAN-209ENST00000513016 GTF2E1P29083 439 aaPredicted RBP5.46□□□□□ -1.54
VCAN-209ENST00000513016 HMGB2P26583 209 aaKnown RBP5.46□□□□□ -1.54
VCAN-209ENST00000513016 NUP155O75694 1391 aa5.45□□□□□ -1.54
VCAN-209ENST00000513016 AMPHP49418 695 aa5.45□□□□□ -1.54
VCAN-209ENST00000513016 FKBP8Q14318 412 aa5.45□□□□□ -1.54
VCAN-209ENST00000513016 CCDC88BA6NC98 1476 aa5.45□□□□□ -1.54
VCAN-209ENST00000513016 FANCD2Q9BXW9 1451 aa5.45□□□□□ -1.54
VCAN-209ENST00000513016 TAF7LQ5H9L4 462 aa5.45□□□□□ -1.54
VCAN-209ENST00000513016 RAPGEF2Q9Y4G8 1499 aa5.45□□□□□ -1.54
VCAN-209ENST00000513016 WASHC2AQ641Q2 1341 aa5.45□□□□□ -1.54
VCAN-209ENST00000513016 LMOD3Q0VAK6 560 aa5.45□□□□□ -1.54
VCAN-209ENST00000513016 IPO8O15397 1037 aaKnown RBP5.44□□□□□ -1.54
VCAN-209ENST00000513016 ATF3P18847 181 aa5.44□□□□□ -1.54
VCAN-209ENST00000513016 HNRNPMP52272 730 aaKnown RBP eCLIP5.44□□□□□ -1.54
VCAN-209ENST00000513016 ZNF330Q9Y3S2 320 aaPredicted RBP5.44□□□□□ -1.54
VCAN-209ENST00000513016 ATAD2BQ9ULI0 1458 aa5.44□□□□□ -1.54
VCAN-209ENST00000513016 DDRGK1Q96HY6 314 aa5.44□□□□□ -1.54
VCAN-209ENST00000513016 TULP1O00294 542 aaPredicted RBP5.44□□□□□ -1.54
VCAN-209ENST00000513016 SF3B2Q13435 895 aaKnown RBP5.44□□□□□ -1.54
VCAN-209ENST00000513016 MSH5O43196 834 aa5.43□□□□□ -1.54
VCAN-209ENST00000513016 STK31Q9BXU1 1019 aa5.43□□□□□ -1.54
VCAN-209ENST00000513016 CC2D1BQ5T0F9 858 aaKnown RBP5.43□□□□□ -1.54
VCAN-209ENST00000513016 MCCP23508 829 aa5.43□□□□□ -1.54
VCAN-209ENST00000513016 GTF3C3Q9Y5Q9 886 aa5.43□□□□□ -1.54
VCAN-209ENST00000513016 GORABQ5T7V8 394 aa5.42□□□□□ -1.54
VCAN-209ENST00000513016 ANO8Q9HCE9 1232 aaPredicted RBP5.42□□□□□ -1.54
VCAN-209ENST00000513016 TOP2AP11388 1531 aaKnown RBP5.41□□□□□ -1.54
VCAN-209ENST00000513016 C1orf141Q5JVX7 400 aa5.41□□□□□ -1.54
VCAN-209ENST00000513016 NAP1L2Q9ULW6 460 aaPredicted RBP5.41□□□□□ -1.54
VCAN-209ENST00000513016 FRAT1Q92837 279 aaPredicted RBP5.41□□□□□ -1.54
VCAN-209ENST00000513016 MROH2BQ7Z745 1585 aa5.41□□□□□ -1.54
VCAN-209ENST00000513016 HIRIP3Q9BW71 556 aaPredicted RBP5.41□□□□□ -1.54
VCAN-209ENST00000513016 SETD5Q9C0A6 1442 aa5.41□□□□□ -1.54
VCAN-209ENST00000513016 GPATCH3Q96I76 525 aa5.4□□□□□ -1.54
VCAN-209ENST00000513016 ROCK2O75116 1388 aaKnown RBP5.4□□□□□ -1.54
VCAN-209ENST00000513016 STAC3Q96MF2 364 aa5.4□□□□□ -1.54
VCAN-209ENST00000513016 U2AF1L5P0DN76 240 aaPredicted RBP5.4□□□□□ -1.54
VCAN-209ENST00000513016 U2AF1Q01081 240 aaKnown RBP eCLIP5.4□□□□□ -1.54
VCAN-209ENST00000513016 PSME1Q06323 249 aa5.4□□□□□ -1.54
VCAN-209ENST00000513016 KTN1Q86UP2 1357 aaKnown RBP5.4□□□□□ -1.54
VCAN-209ENST00000513016 MPHOSPH9Q99550 1183 aa5.4□□□□□ -1.55
VCAN-209ENST00000513016 POGZQ7Z3K3 1410 aa5.4□□□□□ -1.55
VCAN-209ENST00000513016 GOLGA6L6A8MZA4 724 aa5.4□□□□□ -1.55
VCAN-209ENST00000513016 FRAT2O75474 233 aaPredicted RBP5.39□□□□□ -1.55
VCAN-209ENST00000513016 NRDCO43847 1150 aa5.39□□□□□ -1.55
VCAN-209ENST00000513016 KIAA1211Q6ZU35 1233 aa5.39□□□□□ -1.55
VCAN-209ENST00000513016 CLSTN1O94985 981 aa5.39□□□□□ -1.55
VCAN-209ENST00000513016 COG3Q96JB2 828 aa5.39□□□□□ -1.55
VCAN-209ENST00000513016 VPS8Q8N3P4 1428 aa5.39□□□□□ -1.55
VCAN-209ENST00000513016 EVC2Q86UK5 1308 aa5.38□□□□□ -1.55
VCAN-209ENST00000513016 NOL10Q9BSC4 688 aaKnown RBP5.38□□□□□ -1.55
VCAN-209ENST00000513016 CHMP3Q9Y3E7 222 aa5.38□□□□□ -1.55
VCAN-209ENST00000513016 HMMRO75330 724 aa5.38□□□□□ -1.55
VCAN-209ENST00000513016 RALBP1Q15311 655 aa5.38□□□□□ -1.55
VCAN-209ENST00000513016 LTV1Q96GA3 475 aaPredicted RBP5.38□□□□□ -1.55
VCAN-209ENST00000513016 GAPVD1Q14C86 1478 aa5.38□□□□□ -1.55
VCAN-209ENST00000513016 TTC5Q8N0Z6 440 aa5.38□□□□□ -1.55
VCAN-209ENST00000513016 THEMISQ8N1K5 641 aaPredicted RBP5.38□□□□□ -1.55
VCAN-209ENST00000513016 L1TD1Q5T7N2 865 aaKnown RBP5.38□□□□□ -1.55
VCAN-209ENST00000513016 GNL2Q13823 731 aaKnown RBP5.37□□□□□ -1.55
VCAN-209ENST00000513016 SIN3AQ96ST3 1273 aa5.37□□□□□ -1.55
VCAN-209ENST00000513016 GOLGA6L4A6NEF3 574 aa5.37□□□□□ -1.55
VCAN-209ENST00000513016 CCDC34Q96HJ3 373 aa5.37□□□□□ -1.55
VCAN-209ENST00000513016 TEFQ10587 303 aa5.37□□□□□ -1.55
VCAN-209ENST00000513016 CTDP1Q9Y5B0 961 aaPredicted RBP5.37□□□□□ -1.55
VCAN-209ENST00000513016 AMOTL1Q8IY63 956 aa5.37□□□□□ -1.55
VCAN-209ENST00000513016 TRIM34Q9BYJ4 488 aa5.37□□□□□ -1.55
VCAN-209ENST00000513016 LRRFIP1Q32MZ4 808 aaKnown RBP5.36□□□□□ -1.55
VCAN-209ENST00000513016 TRAK1Q9UPV9 953 aa5.36□□□□□ -1.55
VCAN-209ENST00000513016 HSP90B1P14625 803 aaKnown RBP5.36□□□□□ -1.55
VCAN-209ENST00000513016 PROSER2Q86WR7 435 aaPredicted RBP5.36□□□□□ -1.55
VCAN-209ENST00000513016 CHMP4CQ96CF2 233 aa5.36□□□□□ -1.55
VCAN-209ENST00000513016 HTATSF1O43719 755 aaKnown RBP5.36□□□□□ -1.55
VCAN-209ENST00000513016 NUTM2FA1L443 756 aa5.36□□□□□ -1.55
VCAN-209ENST00000513016 CCDC144AA2RUR9 1427 aa5.36□□□□□ -1.55
VCAN-209ENST00000513016 NUTM2DQ5VT03 806 aaPredicted RBP5.36□□□□□ -1.55
VCAN-209ENST00000513016 NCAPD3P42695 1498 aa5.36□□□□□ -1.55
VCAN-209ENST00000513016 RAPGEF4Q8WZA2 1011 aa5.35□□□□□ -1.55
VCAN-209ENST00000513016 FHOD3Q2V2M9 1422 aa5.35□□□□□ -1.55
VCAN-209ENST00000513016 CWC22Q9HCG8 908 aaKnown RBP5.35□□□□□ -1.55
VCAN-209ENST00000513016 DMRT2Q9Y5R5 561 aa5.35□□□□□ -1.55
VCAN-209ENST00000513016 TAOK2Q9UL54 1235 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms