RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 RNF123Q5XPI4 1314 aa23.25■■□□□ 1.31
SQSTM1-211ENST00000506690 POLR1AO95602 1720 aaPredicted RBP23.24■■□□□ 1.31
SQSTM1-211ENST00000506690 SUPT6HQ7KZ85 1726 aaKnown RBP23.24■■□□□ 1.31
SQSTM1-211ENST00000506690 ANP32AP39687 249 aaKnown RBP23.23■■□□□ 1.31
SQSTM1-211ENST00000506690 AKNAQ7Z591 1439 aa23.22■■□□□ 1.31
SQSTM1-211ENST00000506690 L3MBTL2Q969R5 705 aa23.19■■□□□ 1.3
SQSTM1-211ENST00000506690 THOC2Q8NI27 1593 aaKnown RBP23.18■■□□□ 1.3
SQSTM1-211ENST00000506690 EHBP1L1Q8N3D4 1523 aa23.18■■□□□ 1.3
SQSTM1-211ENST00000506690 ARHGEF11O15085 1522 aa23.18■■□□□ 1.3
SQSTM1-211ENST00000506690 IFT140Q96RY7 1462 aa23.18■■□□□ 1.3
SQSTM1-211ENST00000506690 UGGT2Q9NYU1 1516 aa23.17■■□□□ 1.3
SQSTM1-211ENST00000506690 RTL5Q5HYW3 569 aaPredicted RBP23.17■■□□□ 1.3
SQSTM1-211ENST00000506690 ZBTB47Q9UFB7 747 aaPredicted RBP23.17■■□□□ 1.3
SQSTM1-211ENST00000506690 GRIN2BQ13224 1484 aa23.17■■□□□ 1.3
SQSTM1-211ENST00000506690 CCDC136Q96JN2 1154 aa23.17■■□□□ 1.3
SQSTM1-211ENST00000506690 NUDCQ9Y266 331 aa23.17■■□□□ 1.3
SQSTM1-211ENST00000506690 SPATA31E1Q6ZUB1 1445 aa23.16■■□□□ 1.3
SQSTM1-211ENST00000506690 SAMD9Q5K651 1589 aa23.16■■□□□ 1.3
SQSTM1-211ENST00000506690 TCOF1Q13428 1488 aaKnown RBP23.16■■□□□ 1.3
SQSTM1-211ENST00000506690 KDM6BO15054 1643 aa23.15■■□□□ 1.3
SQSTM1-211ENST00000506690 RRP7BPQ9NSQ0 103 aa23.14■■□□□ 1.3
SQSTM1-211ENST00000506690 KIF7Q2M1P5 1343 aa23.14■■□□□ 1.3
SQSTM1-211ENST00000506690 ANO8Q9HCE9 1232 aaPredicted RBP23.12■■□□□ 1.29
SQSTM1-211ENST00000506690 MPHOSPH9Q99550 1183 aa23.11■■□□□ 1.29
SQSTM1-211ENST00000506690 PBRM1Q86U86 1689 aa23.1■■□□□ 1.29
SQSTM1-211ENST00000506690 NBPF8Q3BBV2 869 aa23.09■■□□□ 1.29
SQSTM1-211ENST00000506690 RPRD2Q5VT52 1461 aaKnown RBP23.08■■□□□ 1.29
SQSTM1-211ENST00000506690 TEX14Q8IWB6 1497 aa23.08■■□□□ 1.29
SQSTM1-211ENST00000506690 CHIC2Q9UKJ5 165 aa23.06■■□□□ 1.28
SQSTM1-211ENST00000506690 MAGI3Q5TCQ9 1506 aa23.06■■□□□ 1.28
SQSTM1-211ENST00000506690 DHX29Q7Z478 1369 aaKnown RBP23.06■■□□□ 1.28
SQSTM1-211ENST00000506690 ZNF608Q9ULD9 1512 aaPredicted RBP23.05■■□□□ 1.28
SQSTM1-211ENST00000506690 ANKRD30BQ9BXX2 1392 aa23.04■■□□□ 1.28
SQSTM1-211ENST00000506690 FOXD1Q16676 465 aa23■■□□□ 1.27
SQSTM1-211ENST00000506690 SALL2Q9Y467 1007 aaPredicted RBP23■■□□□ 1.27
SQSTM1-211ENST00000506690 MIA2Q96PC5 1412 aa23■■□□□ 1.27
SQSTM1-211ENST00000506690 IL27Q8NEV9 243 aa22.99■■□□□ 1.27
SQSTM1-211ENST00000506690 ADAMTS12P58397 1594 aa22.99■■□□□ 1.27
SQSTM1-211ENST00000506690 USP35Q9P2H5 1018 aa22.97■■□□□ 1.27
SQSTM1-211ENST00000506690 EIF4G3O43432 1585 aaKnown RBP22.95■■□□□ 1.27
SQSTM1-211ENST00000506690 PNISRQ8TF01 805 aaKnown RBP22.93■■□□□ 1.26
SQSTM1-211ENST00000506690 BCORL1Q5H9F3 1711 aa22.92■■□□□ 1.26
SQSTM1-211ENST00000506690 TCERG1O14776 1098 aaKnown RBP22.92■■□□□ 1.26
SQSTM1-211ENST00000506690 WASHC2CQ9Y4E1 1318 aa22.89■■□□□ 1.26
SQSTM1-211ENST00000506690 ROCK1Q13464 1354 aa22.88■■□□□ 1.25
SQSTM1-211ENST00000506690 NEFMP07197 916 aa22.88■■□□□ 1.25
SQSTM1-211ENST00000506690 ARID4BQ4LE39 1312 aaPredicted RBP22.87■■□□□ 1.25
SQSTM1-211ENST00000506690 MBD5Q9P267 1494 aa22.87■■□□□ 1.25
SQSTM1-211ENST00000506690 PDE4AP27815 886 aa22.86■■□□□ 1.25
SQSTM1-211ENST00000506690 LRPPRCP42704 1394 aaKnown RBP22.86■■□□□ 1.25
SQSTM1-211ENST00000506690 RRP1P56182 461 aaKnown RBP22.85■■□□□ 1.25
SQSTM1-211ENST00000506690 NPM2Q86SE8 214 aaKnown RBP22.85■■□□□ 1.25
SQSTM1-211ENST00000506690 BACH2Q9BYV9 841 aa22.85■■□□□ 1.25
SQSTM1-211ENST00000506690 MS4A1P11836 297 aa22.84■■□□□ 1.25
SQSTM1-211ENST00000506690 MAGI1Q96QZ7 1491 aaPredicted RBP22.83■■□□□ 1.25
SQSTM1-211ENST00000506690 USP47Q96K76 1375 aa22.83■■□□□ 1.25
SQSTM1-211ENST00000506690 LAS1LQ9Y4W2 734 aaKnown RBP22.83■■□□□ 1.25
SQSTM1-211ENST00000506690 PPM1GO15355 546 aaPredicted RBP22.82■■□□□ 1.24
SQSTM1-211ENST00000506690 RTN4Q9NQC3 1192 aaKnown RBP22.82■■□□□ 1.24
SQSTM1-211ENST00000506690 EPRSP07814 1512 aaKnown RBP22.82■■□□□ 1.24
SQSTM1-211ENST00000506690 KDM5CP41229 1560 aa22.82■■□□□ 1.24
SQSTM1-211ENST00000506690 DAPK1P53355 1430 aa22.82■■□□□ 1.24
SQSTM1-211ENST00000506690 IQGAP2Q13576 1575 aa22.81■■□□□ 1.24
SQSTM1-211ENST00000506690 EXOC6Q8TAG9 804 aa22.81■■□□□ 1.24
SQSTM1-211ENST00000506690 TMC1Q8TDI8 760 aa22.81■■□□□ 1.24
SQSTM1-211ENST00000506690 SLC4A1APQ9BWU0 796 aaKnown RBP22.8■■□□□ 1.24
SQSTM1-211ENST00000506690 ROCK2O75116 1388 aaKnown RBP22.79■■□□□ 1.24
SQSTM1-211ENST00000506690 DNMT1P26358 1616 aaKnown RBP22.79■■□□□ 1.24
SQSTM1-211ENST00000506690 CNGB1Q14028 1251 aaPredicted RBP22.79■■□□□ 1.24
SQSTM1-211ENST00000506690 KIF14Q15058 1648 aa22.79■■□□□ 1.24
SQSTM1-211ENST00000506690 GRIN2AQ12879 1464 aa22.78■■□□□ 1.24
SQSTM1-211ENST00000506690 SENP3-EIF4A1A0A087X0R7 540 aa22.78■■□□□ 1.24
SQSTM1-211ENST00000506690 ABCC5O15440 1437 aa22.76■■□□□ 1.23
SQSTM1-211ENST00000506690 BRD4O60885 1362 aaPredicted RBP22.76■■□□□ 1.23
SQSTM1-211ENST00000506690 SYNJ2O15056 1496 aa22.75■■□□□ 1.23
SQSTM1-211ENST00000506690 PZPP20742 1482 aa22.75■■□□□ 1.23
SQSTM1-211ENST00000506690 CHMP7Q8WUX9 453 aaPredicted RBP22.74■■□□□ 1.23
SQSTM1-211ENST00000506690 RCAN3Q9UKA8 241 aa22.74■■□□□ 1.23
SQSTM1-211ENST00000506690 KIF15Q9NS87 1388 aa22.74■■□□□ 1.23
SQSTM1-211ENST00000506690 POLR3GLQ9BT43 218 aa22.74■■□□□ 1.23
SQSTM1-211ENST00000506690 CDK13Q14004 1512 aaKnown RBP22.74■■□□□ 1.23
SQSTM1-211ENST00000506690 FBLN2P98095 1184 aa22.73■■□□□ 1.23
SQSTM1-211ENST00000506690 KIAA0586Q9BVV6 1533 aa22.73■■□□□ 1.23
SQSTM1-211ENST00000506690 KTN1Q86UP2 1357 aaKnown RBP22.73■■□□□ 1.23
SQSTM1-211ENST00000506690 MYBBP1AQ9BQG0 1328 aaKnown RBP22.7■■□□□ 1.22
SQSTM1-211ENST00000506690 DDRGK1Q96HY6 314 aa22.68■■□□□ 1.22
SQSTM1-211ENST00000506690 PDE3BQ13370 1112 aa22.67■■□□□ 1.22
SQSTM1-211ENST00000506690 RALBP1Q15311 655 aa22.67■■□□□ 1.22
SQSTM1-211ENST00000506690 UHRF1BP1Q6BDS2 1440 aa22.67■■□□□ 1.22
SQSTM1-211ENST00000506690 GSE1Q14687 1217 aa22.66■■□□□ 1.22
SQSTM1-211ENST00000506690 KIAA1107Q9UPP5 1409 aa22.66■■□□□ 1.22
SQSTM1-211ENST00000506690 RALGAPBQ86X10 1494 aa22.66■■□□□ 1.22
SQSTM1-211ENST00000506690 E9PCH4 1651 aa22.66■■□□□ 1.22
SQSTM1-211ENST00000506690 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.65■■□□□ 1.22
SQSTM1-211ENST00000506690 BRPF3Q9ULD4 1205 aa22.62■■□□□ 1.21
SQSTM1-211ENST00000506690 CEP170Q5SW79 1584 aa22.62■■□□□ 1.21
SQSTM1-211ENST00000506690 ZNF326Q5BKZ1 582 aaKnown RBP22.62■■□□□ 1.21
SQSTM1-211ENST00000506690 ARID3CA6NKF2 412 aa22.61■■□□□ 1.21
SQSTM1-211ENST00000506690 ZNF644Q9H582 1327 aaPredicted RBP22.61■■□□□ 1.21
SQSTM1-211ENST00000506690 NUP160Q12769 1436 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms