RNA–Protein interactions for RNA: ENST00000505306.5

ITGA3-204, Transcript of integrin subunit alpha 3, humanhuman

TSL 2

Gene ITGA3, Length 5,479 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA3-204ENST00000505306 HDGFL2Q7Z4V5 671 aaPredicted RBP21.64■■□□□ 1.05
ITGA3-204ENST00000505306 FHOD3Q2V2M9 1422 aa21.64■■□□□ 1.05
ITGA3-204ENST00000505306 FTSJ3Q8IY81 847 aaKnown RBP21.63■■□□□ 1.05
ITGA3-204ENST00000505306 PNNQ9H307 717 aaKnown RBP21.63■■□□□ 1.05
ITGA3-204ENST00000505306 CCDC9Q9Y3X0 531 aaKnown RBP21.63■■□□□ 1.05
ITGA3-204ENST00000505306 RSPH4AQ5TD94 716 aa21.62■■□□□ 1.05
ITGA3-204ENST00000505306 MORC1Q86VD1 984 aa21.61■■□□□ 1.05
ITGA3-204ENST00000505306 SMARCA4P51532 1647 aa21.59■■□□□ 1.05
ITGA3-204ENST00000505306 NUTM2DQ5VT03 806 aaPredicted RBP21.59■■□□□ 1.05
ITGA3-204ENST00000505306 SETD5Q9C0A6 1442 aa21.56■■□□□ 1.04
ITGA3-204ENST00000505306 FAM69CQ0P6D2 419 aa21.56■■□□□ 1.04
ITGA3-204ENST00000505306 CCDC18Q5T9S5 1454 aa21.55■■□□□ 1.04
ITGA3-204ENST00000505306 MPHOSPH9Q99550 1183 aa21.53■■□□□ 1.04
ITGA3-204ENST00000505306 RTF1Q92541 710 aaKnown RBP21.51■■□□□ 1.03
ITGA3-204ENST00000505306 OS9Q13438 667 aaPredicted RBP21.5■■□□□ 1.03
ITGA3-204ENST00000505306 FRAT1Q92837 279 aaPredicted RBP21.5■■□□□ 1.03
ITGA3-204ENST00000505306 NGDNQ8NEJ9 315 aaKnown RBP21.49■■□□□ 1.03
ITGA3-204ENST00000505306 GOLGA2Q08379 1002 aa21.48■■□□□ 1.03
ITGA3-204ENST00000505306 RBM19Q9Y4C8 960 aaKnown RBP21.47■■□□□ 1.03
ITGA3-204ENST00000505306 NUTM2FA1L443 756 aa21.46■■□□□ 1.03
ITGA3-204ENST00000505306 ROCK2O75116 1388 aaKnown RBP21.46■■□□□ 1.03
ITGA3-204ENST00000505306 TIMELESSQ9UNS1 1208 aa21.44■■□□□ 1.02
ITGA3-204ENST00000505306 GAPVD1Q14C86 1478 aa21.44■■□□□ 1.02
ITGA3-204ENST00000505306 ZNF330Q9Y3S2 320 aaPredicted RBP21.43■■□□□ 1.02
ITGA3-204ENST00000505306 TSHZ2Q9NRE2 1034 aa21.42■■□□□ 1.02
ITGA3-204ENST00000505306 NOP58Q9Y2X3 529 aaKnown RBP21.42■■□□□ 1.02
ITGA3-204ENST00000505306 RTN4Q9NQC3 1192 aaKnown RBP21.41■■□□□ 1.02
ITGA3-204ENST00000505306 CASC1Q6TDU7 716 aa21.41■■□□□ 1.02
ITGA3-204ENST00000505306 PPP4R2Q9NY27 417 aa21.41■■□□□ 1.02
ITGA3-204ENST00000505306 CHMP4BQ9H444 224 aaKnown RBP21.4■■□□□ 1.02
ITGA3-204ENST00000505306 HSPA5P11021 654 aaKnown RBP21.39■■□□□ 1.01
ITGA3-204ENST00000505306 TERF2IPQ9NYB0 399 aa21.38■■□□□ 1.01
ITGA3-204ENST00000505306 EIF3AQ14152 1382 aaKnown RBP21.38■■□□□ 1.01
ITGA3-204ENST00000505306 RAD54L2Q9Y4B4 1467 aa21.38■■□□□ 1.01
ITGA3-204ENST00000505306 FGD5Q6ZNL6 1462 aa21.38■■□□□ 1.01
ITGA3-204ENST00000505306 DDRGK1Q96HY6 314 aa21.38■■□□□ 1.01
ITGA3-204ENST00000505306 DEKP35659 375 aaKnown RBP21.37■■□□□ 1.01
ITGA3-204ENST00000505306 MS4A1P11836 297 aa21.36■■□□□ 1.01
ITGA3-204ENST00000505306 AQRO60306 1485 aaKnown RBP eCLIP21.36■■□□□ 1.01
ITGA3-204ENST00000505306 U2AF1L5P0DN76 240 aaPredicted RBP21.35■■□□□ 1.01
ITGA3-204ENST00000505306 U2AF1Q01081 240 aaKnown RBP eCLIP21.35■■□□□ 1.01
ITGA3-204ENST00000505306 RAB3GAP2Q9H2M9 1393 aa21.34■■□□□ 1.01
ITGA3-204ENST00000505306 CDK11BP21127 795 aaKnown RBP21.34■■□□□ 1.01
ITGA3-204ENST00000505306 NCAPD3P42695 1498 aa21.33■■□□□ 1.01
ITGA3-204ENST00000505306 TRAK1Q9UPV9 953 aa21.33■■□□□ 1.01
ITGA3-204ENST00000505306 AMPHP49418 695 aa21.31■■□□□ 1
ITGA3-204ENST00000505306 KTN1Q86UP2 1357 aaKnown RBP21.3■■□□□ 1
ITGA3-204ENST00000505306 LTV1Q96GA3 475 aaPredicted RBP21.3■■□□□ 1
ITGA3-204ENST00000505306 VGFO15240 615 aaPredicted RBP21.28■■□□□ 1
ITGA3-204ENST00000505306 TAOK2Q9UL54 1235 aa21.28■■□□□ 1
ITGA3-204ENST00000505306 B4GALNT3Q6L9W6 998 aa21.28■■□□□ 1
ITGA3-204ENST00000505306 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.28■■□□□ 1
ITGA3-204ENST00000505306 TMX4Q9H1E5 349 aaPredicted RBP21.27■■□□□ 1
ITGA3-204ENST00000505306 KCNJ4P48050 445 aa21.25■□□□□ 0.99
ITGA3-204ENST00000505306 FGD1P98174 961 aa21.25■□□□□ 0.99
ITGA3-204ENST00000505306 NCLP19338 710 aaKnown RBP21.25■□□□□ 0.99
ITGA3-204ENST00000505306 BECN1Q14457 450 aa21.25■□□□□ 0.99
ITGA3-204ENST00000505306 TULP1O00294 542 aaPredicted RBP21.24■□□□□ 0.99
ITGA3-204ENST00000505306 IGF1RP08069 1367 aa21.24■□□□□ 0.99
ITGA3-204ENST00000505306 L3MBTL2Q969R5 705 aa21.24■□□□□ 0.99
ITGA3-204ENST00000505306 CALD1Q05682 793 aaKnown RBP21.23■□□□□ 0.99
ITGA3-204ENST00000505306 CCDC144AA2RUR9 1427 aa21.22■□□□□ 0.99
ITGA3-204ENST00000505306 EVA1CP58658 441 aa21.21■□□□□ 0.99
ITGA3-204ENST00000505306 RGS3P49796 1198 aa21.2■□□□□ 0.98
ITGA3-204ENST00000505306 RUSC2Q8N2Y8 1516 aa21.2■□□□□ 0.98
ITGA3-204ENST00000505306 MEX3CQ5U5Q3 659 aaKnown RBP21.18■□□□□ 0.98
ITGA3-204ENST00000505306 ERICH6BQ5W0A0 696 aa21.18■□□□□ 0.98
ITGA3-204ENST00000505306 NAP1L2Q9ULW6 460 aaPredicted RBP21.18■□□□□ 0.98
ITGA3-204ENST00000505306 UACAQ9BZF9 1416 aa21.18■□□□□ 0.98
ITGA3-204ENST00000505306 CHMP4AQ9BY43 222 aa21.18■□□□□ 0.98
ITGA3-204ENST00000505306 ISY1Q9ULR0 285 aaKnown RBP21.17■□□□□ 0.98
ITGA3-204ENST00000505306 CCER2I3L3R5 266 aa21.17■□□□□ 0.98
ITGA3-204ENST00000505306 GRIN2BQ13224 1484 aa21.16■□□□□ 0.98
ITGA3-204ENST00000505306 ZRSR1Q15695 479 aaKnown RBP21.15■□□□□ 0.98
ITGA3-204ENST00000505306 STK31Q9BXU1 1019 aa21.15■□□□□ 0.98
ITGA3-204ENST00000505306 MINK1Q8N4C8 1332 aaPredicted RBP21.13■□□□□ 0.97
ITGA3-204ENST00000505306 NESP48681 1621 aa21.13■□□□□ 0.97
ITGA3-204ENST00000505306 IPO8O15397 1037 aaKnown RBP21.13■□□□□ 0.97
ITGA3-204ENST00000505306 MRC2Q9UBG0 1479 aa21.12■□□□□ 0.97
ITGA3-204ENST00000505306 RALBP1Q15311 655 aa21.12■□□□□ 0.97
ITGA3-204ENST00000505306 TPRNQ4KMQ1 711 aa21.12■□□□□ 0.97
ITGA3-204ENST00000505306 GOLGA6L22H0YM25 854 aa21.12■□□□□ 0.97
ITGA3-204ENST00000505306 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.12■□□□□ 0.97
ITGA3-204ENST00000505306 TRIM44Q96DX7 344 aaPredicted RBP21.11■□□□□ 0.97
ITGA3-204ENST00000505306 GTF2E1P29083 439 aaPredicted RBP21.11■□□□□ 0.97
ITGA3-204ENST00000505306 APBB1O00213 710 aa21.1■□□□□ 0.97
ITGA3-204ENST00000505306 PRG4Q92954 1404 aaPredicted RBP21.1■□□□□ 0.97
ITGA3-204ENST00000505306 CHMP3Q9Y3E7 222 aa21.1■□□□□ 0.97
ITGA3-204ENST00000505306 COG3Q96JB2 828 aa21.09■□□□□ 0.97
ITGA3-204ENST00000505306 ATF3P18847 181 aa21.09■□□□□ 0.97
ITGA3-204ENST00000505306 PSME1Q06323 249 aa21.09■□□□□ 0.97
ITGA3-204ENST00000505306 EVC2Q86UK5 1308 aa21.08■□□□□ 0.97
ITGA3-204ENST00000505306 TAF7LQ5H9L4 462 aa21.08■□□□□ 0.97
ITGA3-204ENST00000505306 CC2D2AQ9P2K1 1620 aa21.08■□□□□ 0.96
ITGA3-204ENST00000505306 G3V3G9 751 aa21.07■□□□□ 0.96
ITGA3-204ENST00000505306 DCAF8Q5TAQ9 597 aa21.07■□□□□ 0.96
ITGA3-204ENST00000505306 MSH5O43196 834 aa21.06■□□□□ 0.96
ITGA3-204ENST00000505306 NAP1L5Q96NT1 182 aaPredicted RBP21.05■□□□□ 0.96
ITGA3-204ENST00000505306 LMOD3Q0VAK6 560 aa21.04■□□□□ 0.96
ITGA3-204ENST00000505306 GORABQ5T7V8 394 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms