RNA–Protein interactions for RNA: ENST00000504841.6

NPIPB3-203, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

APPRIS P1 TSL 1 (best)

Gene NPIPB3, Length 1,254 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-203ENST00000504841 POGZQ7Z3K3 1410 aa11.63□□□□□ -0.55
NPIPB3-203ENST00000504841 EFCAB5A4FU69 1503 aa11.62□□□□□ -0.55
NPIPB3-203ENST00000504841 ZMYM4Q5VZL5 1548 aa11.62□□□□□ -0.55
NPIPB3-203ENST00000504841 SIGLEC1Q9BZZ2 1709 aa11.62□□□□□ -0.55
NPIPB3-203ENST00000504841 CDK13Q14004 1512 aaKnown RBP11.6□□□□□ -0.55
NPIPB3-203ENST00000504841 FER1L4A9Z1Z3 1794 aa11.6□□□□□ -0.55
NPIPB3-203ENST00000504841 HECW1Q76N89 1606 aa11.6□□□□□ -0.55
NPIPB3-203ENST00000504841 SCAPERQ9BY12 1400 aa11.58□□□□□ -0.56
NPIPB3-203ENST00000504841 CERKQ8TCT0 537 aa11.57□□□□□ -0.56
NPIPB3-203ENST00000504841 EHMT2Q96KQ7 1210 aa11.57□□□□□ -0.56
NPIPB3-203ENST00000504841 ATP1B4Q9UN42 357 aaPredicted RBP11.57□□□□□ -0.56
NPIPB3-203ENST00000504841 EEA1Q15075 1411 aa11.57□□□□□ -0.56
NPIPB3-203ENST00000504841 MAGI2Q86UL8 1455 aa11.57□□□□□ -0.56
NPIPB3-203ENST00000504841 C9orf84Q5VXU9 1444 aa11.54□□□□□ -0.56
NPIPB3-203ENST00000504841 CEBPAP49715 358 aaPredicted RBP11.54□□□□□ -0.56
NPIPB3-203ENST00000504841 PLCH2O75038 1416 aa11.53□□□□□ -0.56
NPIPB3-203ENST00000504841 MYT1LQ9UL68 1186 aa11.53□□□□□ -0.56
NPIPB3-203ENST00000504841 ARHGEF12Q9NZN5 1544 aa11.53□□□□□ -0.56
NPIPB3-203ENST00000504841 MYO5CQ9NQX4 1742 aa11.52□□□□□ -0.56
NPIPB3-203ENST00000504841 ATP10AO60312 1499 aa11.52□□□□□ -0.56
NPIPB3-203ENST00000504841 PREX1Q8TCU6 1659 aa11.52□□□□□ -0.57
NPIPB3-203ENST00000504841 KIF14Q15058 1648 aa11.5□□□□□ -0.57
NPIPB3-203ENST00000504841 EFCAB2Q5VUJ9 269 aa11.5□□□□□ -0.57
NPIPB3-203ENST00000504841 DISP3Q9P2K9 1392 aa11.5□□□□□ -0.57
NPIPB3-203ENST00000504841 ARHGAP5Q13017 1502 aa11.5□□□□□ -0.57
NPIPB3-203ENST00000504841 UHRF1BP1Q6BDS2 1440 aa11.49□□□□□ -0.57
NPIPB3-203ENST00000504841 UBTFP17480 764 aaKnown RBP11.48□□□□□ -0.57
NPIPB3-203ENST00000504841 ZNF518AQ6AHZ1 1483 aa11.48□□□□□ -0.57
NPIPB3-203ENST00000504841 FMN1Q68DA7 1419 aa11.47□□□□□ -0.57
NPIPB3-203ENST00000504841 AFAP1Q8N556 730 aa11.47□□□□□ -0.57
NPIPB3-203ENST00000504841 CLIP1P30622 1438 aa11.46□□□□□ -0.57
NPIPB3-203ENST00000504841 CDK11AQ9UQ88 783 aaPredicted RBP11.46□□□□□ -0.57
NPIPB3-203ENST00000504841 STRCQ7RTU9 1775 aa11.46□□□□□ -0.58
NPIPB3-203ENST00000504841 KDM5CP41229 1560 aa11.45□□□□□ -0.58
NPIPB3-203ENST00000504841 DIP2CQ9Y2E4 1556 aa11.45□□□□□ -0.58
NPIPB3-203ENST00000504841 ARHGAP35Q9NRY4 1499 aa11.45□□□□□ -0.58
NPIPB3-203ENST00000504841 TROQ12816 1431 aaPredicted RBP11.45□□□□□ -0.58
NPIPB3-203ENST00000504841 ILDR2Q71H61 639 aa11.44□□□□□ -0.58
NPIPB3-203ENST00000504841 DMRT2Q9Y5R5 561 aa11.44□□□□□ -0.58
NPIPB3-203ENST00000504841 ABCA6Q8N139 1617 aa11.44□□□□□ -0.58
NPIPB3-203ENST00000504841 ESF1Q9H501 851 aaKnown RBP11.43□□□□□ -0.58
NPIPB3-203ENST00000504841 C3P01024 1663 aa11.43□□□□□ -0.58
NPIPB3-203ENST00000504841 SPATA31D1Q6ZQQ2 1576 aa11.41□□□□□ -0.58
NPIPB3-203ENST00000504841 LRRIQ1Q96JM4 1722 aa11.41□□□□□ -0.58
NPIPB3-203ENST00000504841 TRAPPC8Q9Y2L5 1435 aa11.41□□□□□ -0.58
NPIPB3-203ENST00000504841 REREQ9P2R6 1566 aa11.41□□□□□ -0.58
NPIPB3-203ENST00000504841 PREX2Q70Z35 1606 aa11.4□□□□□ -0.58
NPIPB3-203ENST00000504841 CDC42BPBQ9Y5S2 1711 aa11.4□□□□□ -0.58
NPIPB3-203ENST00000504841 ABCC1P33527 1531 aa11.4□□□□□ -0.59
NPIPB3-203ENST00000504841 MLH3Q9UHC1 1453 aa11.39□□□□□ -0.59
NPIPB3-203ENST00000504841 ITSN2Q9NZM3 1697 aa11.39□□□□□ -0.59
NPIPB3-203ENST00000504841 SETD1BQ9UPS6 1966 aaKnown RBP11.38□□□□□ -0.59
NPIPB3-203ENST00000504841 PTPRTO14522 1441 aa11.38□□□□□ -0.59
NPIPB3-203ENST00000504841 SOCS7O14512 581 aa11.38□□□□□ -0.59
NPIPB3-203ENST00000504841 AGLP35573 1532 aa11.38□□□□□ -0.59
NPIPB3-203ENST00000504841 ZNF777Q9ULD5 760 aaPredicted RBP11.36□□□□□ -0.59
NPIPB3-203ENST00000504841 KIDINS220Q9ULH0 1771 aa11.36□□□□□ -0.59
NPIPB3-203ENST00000504841 NCOA1Q15788 1441 aa11.35□□□□□ -0.59
NPIPB3-203ENST00000504841 CNTLNQ9NXG0 1405 aa11.35□□□□□ -0.59
NPIPB3-203ENST00000504841 LTBP4Q8N2S1 1624 aa11.35□□□□□ -0.59
NPIPB3-203ENST00000504841 CAMSAP1Q5T5Y3 1602 aa11.35□□□□□ -0.59
NPIPB3-203ENST00000504841 CCDC18Q5T9S5 1454 aa11.34□□□□□ -0.59
NPIPB3-203ENST00000504841 CDC42BPAQ5VT25 1732 aa11.33□□□□□ -0.6
NPIPB3-203ENST00000504841 SYCP2Q9BX26 1530 aa11.33□□□□□ -0.6
NPIPB3-203ENST00000504841 SAMD9LQ8IVG5 1584 aa11.33□□□□□ -0.6
NPIPB3-203ENST00000504841 CASKIN1Q8WXD9 1431 aa11.32□□□□□ -0.6
NPIPB3-203ENST00000504841 ZNF335Q9H4Z2 1342 aaPredicted RBP11.32□□□□□ -0.6
NPIPB3-203ENST00000504841 NCKAP5LQ9HCH0 1330 aa11.32□□□□□ -0.6
NPIPB3-203ENST00000504841 SUPT6HQ7KZ85 1726 aaKnown RBP11.32□□□□□ -0.6
NPIPB3-203ENST00000504841 SPAG9O60271 1321 aaKnown RBP11.31□□□□□ -0.6
NPIPB3-203ENST00000504841 IQSEC2Q5JU85 1478 aa11.31□□□□□ -0.6
NPIPB3-203ENST00000504841 MROH2AA6NES4 1674 aa11.3□□□□□ -0.6
NPIPB3-203ENST00000504841 ZMYM3Q14202 1370 aa11.3□□□□□ -0.6
NPIPB3-203ENST00000504841 NPATQ14207 1427 aa11.3□□□□□ -0.6
NPIPB3-203ENST00000504841 UBAP1LF5GYI3 381 aa11.3□□□□□ -0.6
NPIPB3-203ENST00000504841 MYO3AQ8NEV4 1616 aa11.3□□□□□ -0.6
NPIPB3-203ENST00000504841 CLTCQ00610 1675 aaKnown RBP11.3□□□□□ -0.6
NPIPB3-203ENST00000504841 HNRNPMP52272 730 aaKnown RBP eCLIP11.29□□□□□ -0.6
NPIPB3-203ENST00000504841 ATP7AQ04656 1500 aa11.29□□□□□ -0.6
NPIPB3-203ENST00000504841 FYCO1Q9BQS8 1478 aa11.27□□□□□ -0.6
NPIPB3-203ENST00000504841 GPATCH8Q9UKJ3 1502 aaKnown RBP11.27□□□□□ -0.61
NPIPB3-203ENST00000504841 GGT6Q6P531 493 aa11.27□□□□□ -0.61
NPIPB3-203ENST00000504841 CEP170BQ9Y4F5 1589 aaPredicted RBP11.27□□□□□ -0.61
NPIPB3-203ENST00000504841 A2MP01023 1474 aa11.26□□□□□ -0.61
NPIPB3-203ENST00000504841 ZNF142P52746 1687 aaPredicted RBP11.26□□□□□ -0.61
NPIPB3-203ENST00000504841 PLXNC1O60486 1568 aa11.25□□□□□ -0.61
NPIPB3-203ENST00000504841 INO80Q9ULG1 1556 aaPredicted RBP11.25□□□□□ -0.61
NPIPB3-203ENST00000504841 CFDP1Q9UEE9 299 aaPredicted RBP11.25□□□□□ -0.61
NPIPB3-203ENST00000504841 SCAF1Q9H7N4 1312 aaKnown RBP11.25□□□□□ -0.61
NPIPB3-203ENST00000504841 PTPRKQ15262 1439 aa11.25□□□□□ -0.61
NPIPB3-203ENST00000504841 PLA2R1Q13018 1463 aa11.25□□□□□ -0.61
NPIPB3-203ENST00000504841 CCNB3Q8WWL7 1395 aa11.24□□□□□ -0.61
NPIPB3-203ENST00000504841 PLEKHH2Q8IVE3 1493 aa11.24□□□□□ -0.61
NPIPB3-203ENST00000504841 PKD2Q13563 968 aa11.23□□□□□ -0.61
NPIPB3-203ENST00000504841 TCOF1Q13428 1488 aaKnown RBP11.23□□□□□ -0.61
NPIPB3-203ENST00000504841 MTUS2Q5JR59 1369 aa11.22□□□□□ -0.61
NPIPB3-203ENST00000504841 KIAA1107Q9UPP5 1409 aa11.22□□□□□ -0.61
NPIPB3-203ENST00000504841 PIP4K2BP78356 416 aa11.21□□□□□ -0.61
NPIPB3-203ENST00000504841 PPP4R3CPQ6ZMV5 832 aa11.21□□□□□ -0.61
NPIPB3-203ENST00000504841 ADGBQ8N7X0 1667 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms