RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 CDC42BPAQ5VT25 1732 aa31.2■■■□□ 2.58
UBE2D3-216ENST00000503742 ROCK1Q13464 1354 aa31.19■■■□□ 2.58
UBE2D3-216ENST00000503742 RRP7BPQ9NSQ0 103 aa31.19■■■□□ 2.58
UBE2D3-216ENST00000503742 KDM6BO15054 1643 aa31.12■■■□□ 2.57
UBE2D3-216ENST00000503742 DIEXFQ68CQ4 756 aaKnown RBP31.11■■■□□ 2.57
UBE2D3-216ENST00000503742 UHRF1BP1LA0JNW5 1464 aa31.09■■■□□ 2.57
UBE2D3-216ENST00000503742 SIN3AQ96ST3 1273 aa31.08■■■□□ 2.57
UBE2D3-216ENST00000503742 CROCC2H7BZ55 1655 aa31.07■■■□□ 2.56
UBE2D3-216ENST00000503742 TIMELESSQ9UNS1 1208 aa31.05■■■□□ 2.56
UBE2D3-216ENST00000503742 ADGBQ8N7X0 1667 aa31.03■■■□□ 2.56
UBE2D3-216ENST00000503742 ZNF777Q9ULD5 760 aaPredicted RBP31.02■■■□□ 2.56
UBE2D3-216ENST00000503742 ADGRL2O95490 1459 aa31.02■■■□□ 2.56
UBE2D3-216ENST00000503742 ACIN1Q9UKV3 1341 aaKnown RBP31■■■□□ 2.55
UBE2D3-216ENST00000503742 PREX2Q70Z35 1606 aa31■■■□□ 2.55
UBE2D3-216ENST00000503742 NEUROD1Q13562 356 aa30.99■■■□□ 2.55
UBE2D3-216ENST00000503742 KDM5BQ9UGL1 1544 aa30.99■■■□□ 2.55
UBE2D3-216ENST00000503742 ZCCHC11Q5TAX3 1644 aaKnown RBP30.98■■■□□ 2.55
UBE2D3-216ENST00000503742 NCOA1Q15788 1441 aa30.98■■■□□ 2.55
UBE2D3-216ENST00000503742 CDC42BPBQ9Y5S2 1711 aa30.98■■■□□ 2.55
UBE2D3-216ENST00000503742 DENND4BO75064 1496 aaPredicted RBP30.98■■■□□ 2.55
UBE2D3-216ENST00000503742 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.94■■■□□ 2.546e-33■□□□□ 10.7
UBE2D3-216ENST00000503742 SHANK2Q9UPX8 1470 aa30.94■■■□□ 2.54
UBE2D3-216ENST00000503742 TTC37Q6PGP7 1564 aa30.93■■■□□ 2.54
UBE2D3-216ENST00000503742 ARHGEF5Q12774 1597 aa30.92■■■□□ 2.54
UBE2D3-216ENST00000503742 TRIM52Q96A61 297 aa30.91■■■□□ 2.54
UBE2D3-216ENST00000503742 SAMD9LQ8IVG5 1584 aa30.9■■■□□ 2.54
UBE2D3-216ENST00000503742 MBD5Q9P267 1494 aa30.88■■■□□ 2.53
UBE2D3-216ENST00000503742 ANKRD30AQ9BXX3 1397 aa30.88■■■□□ 2.53
UBE2D3-216ENST00000503742 MPHOSPH9Q99550 1183 aa30.87■■■□□ 2.53
UBE2D3-216ENST00000503742 C9orf84Q5VXU9 1444 aa30.84■■■□□ 2.53
UBE2D3-216ENST00000503742 MYO5CQ9NQX4 1742 aa30.84■■■□□ 2.53
UBE2D3-216ENST00000503742 PPP1R15AO75807 674 aaPredicted RBP30.83■■■□□ 2.53
UBE2D3-216ENST00000503742 OSCARQ8IYS5 282 aa30.83■■■□□ 2.53
UBE2D3-216ENST00000503742 TONSLQ96HA7 1378 aa30.8■■■□□ 2.52
UBE2D3-216ENST00000503742 ARHGAP5Q13017 1502 aa30.8■■■□□ 2.52
UBE2D3-216ENST00000503742 HNRNPMP52272 730 aaKnown RBP eCLIP30.79■■■□□ 2.524e-13■■■■■ 32.7
UBE2D3-216ENST00000503742 CCDC141Q6ZP82 1450 aa30.79■■■□□ 2.52
UBE2D3-216ENST00000503742 RSPH4AQ5TD94 716 aa30.77■■■□□ 2.52
UBE2D3-216ENST00000503742 TSPY4P0CV99 314 aa30.77■■■□□ 2.52
UBE2D3-216ENST00000503742 TSPY10P0CW01 314 aa30.77■■■□□ 2.52
UBE2D3-216ENST00000503742 ANKRD50Q9ULJ7 1429 aa30.75■■■□□ 2.51
UBE2D3-216ENST00000503742 KCNH8Q96L42 1107 aa30.75■■■□□ 2.51
UBE2D3-216ENST00000503742 PZPP20742 1482 aa30.74■■■□□ 2.51
UBE2D3-216ENST00000503742 PLCH2O75038 1416 aa30.73■■■□□ 2.51
UBE2D3-216ENST00000503742 SYCP2Q9BX26 1530 aa30.73■■■□□ 2.51
UBE2D3-216ENST00000503742 KIAA1107Q9UPP5 1409 aa30.72■■■□□ 2.51
UBE2D3-216ENST00000503742 PLEKHH2Q8IVE3 1493 aa30.72■■■□□ 2.51
UBE2D3-216ENST00000503742 ANKRD30BQ9BXX2 1392 aa30.7■■■□□ 2.51
UBE2D3-216ENST00000503742 MAST1Q9Y2H9 1570 aa30.7■■■□□ 2.51
UBE2D3-216ENST00000503742 SLC4A1APQ9BWU0 796 aaKnown RBP30.67■■■□□ 2.5
UBE2D3-216ENST00000503742 KIF15Q9NS87 1388 aa30.67■■■□□ 2.5
UBE2D3-216ENST00000503742 WDR7Q9Y4E6 1490 aa30.66■■■□□ 2.5
UBE2D3-216ENST00000503742 FOXD1Q16676 465 aa30.65■■■□□ 2.5
UBE2D3-216ENST00000503742 ARAP3Q8WWN8 1544 aa30.64■■■□□ 2.5
UBE2D3-216ENST00000503742 KDM5DQ9BY66 1539 aa30.61■■■□□ 2.49
UBE2D3-216ENST00000503742 ARHGEF12Q9NZN5 1544 aa30.61■■■□□ 2.49
UBE2D3-216ENST00000503742 RPRD2Q5VT52 1461 aaKnown RBP30.6■■■□□ 2.49
UBE2D3-216ENST00000503742 EFCAB2Q5VUJ9 269 aa30.6■■■□□ 2.49
UBE2D3-216ENST00000503742 ABCC1P33527 1531 aa30.58■■■□□ 2.49
UBE2D3-216ENST00000503742 PLXNC1O60486 1568 aa30.57■■■□□ 2.48
UBE2D3-216ENST00000503742 MIER1Q8N108 512 aa30.56■■■□□ 2.48
UBE2D3-216ENST00000503742 ABCA9Q8IUA7 1624 aa30.55■■■□□ 2.48
UBE2D3-216ENST00000503742 ASXL2Q76L83 1435 aa30.53■■■□□ 2.48
UBE2D3-216ENST00000503742 NUP155O75694 1391 aa30.52■■■□□ 2.48
UBE2D3-216ENST00000503742 TEX14Q8IWB6 1497 aa30.49■■■□□ 2.47
UBE2D3-216ENST00000503742 PKD2Q13563 968 aa30.48■■■□□ 2.47
UBE2D3-216ENST00000503742 L3MBTL2Q969R5 705 aa30.47■■■□□ 2.47
UBE2D3-216ENST00000503742 TRAPPC8Q9Y2L5 1435 aa30.46■■■□□ 2.47
UBE2D3-216ENST00000503742 UNC13BO14795 1591 aa30.44■■■□□ 2.46
UBE2D3-216ENST00000503742 DUOX2Q9NRD8 1548 aa30.43■■■□□ 2.46
UBE2D3-216ENST00000503742 FANCAO15360 1455 aa30.4■■■□□ 2.46
UBE2D3-216ENST00000503742 NPM1P06748 294 aaKnown RBP eCLIP30.39■■■□□ 2.46
UBE2D3-216ENST00000503742 FAM135AQ9P2D6 1515 aa30.39■■■□□ 2.46
UBE2D3-216ENST00000503742 RTEL1-TNFRSF6BF6WH68 1400 aa30.38■■■□□ 2.45
UBE2D3-216ENST00000503742 ERBINQ96RT1 1412 aa30.37■■■□□ 2.45
UBE2D3-216ENST00000503742 ZFYVE16Q7Z3T8 1539 aa30.33■■■□□ 2.45
UBE2D3-216ENST00000503742 MAGI2Q86UL8 1455 aa30.32■■■□□ 2.44
UBE2D3-216ENST00000503742 HIRIP3Q9BW71 556 aaPredicted RBP30.32■■■□□ 2.44
UBE2D3-216ENST00000503742 IQGAP3Q86VI3 1631 aa30.31■■■□□ 2.44
UBE2D3-216ENST00000503742 SPAG9O60271 1321 aaKnown RBP30.3■■■□□ 2.44
UBE2D3-216ENST00000503742 AFAP1Q8N556 730 aa30.3■■■□□ 2.44
UBE2D3-216ENST00000503742 ADGRL1O94910 1474 aa30.28■■■□□ 2.44
UBE2D3-216ENST00000503742 NBPF8Q3BBV2 869 aa30.27■■■□□ 2.44
UBE2D3-216ENST00000503742 INO80Q9ULG1 1556 aaPredicted RBP30.27■■■□□ 2.44
UBE2D3-216ENST00000503742 SCAPERQ9BY12 1400 aa30.24■■■□□ 2.43
UBE2D3-216ENST00000503742 ATP7AQ04656 1500 aa30.23■■■□□ 2.43
UBE2D3-216ENST00000503742 DDX10Q13206 875 aaKnown RBP30.22■■■□□ 2.43
UBE2D3-216ENST00000503742 HSPA5P11021 654 aaKnown RBP30.19■■■□□ 2.42
UBE2D3-216ENST00000503742 CD109Q6YHK3 1445 aa30.19■■■□□ 2.42
UBE2D3-216ENST00000503742 EIF4G2P78344 907 aaKnown RBP eCLIP30.18■■■□□ 2.42
UBE2D3-216ENST00000503742 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.18■■■□□ 2.42
UBE2D3-216ENST00000503742 CFAP74Q9C0B2 1584 aa30.18■■■□□ 2.42
UBE2D3-216ENST00000503742 PLA2R1Q13018 1463 aa30.15■■■□□ 2.42
UBE2D3-216ENST00000503742 CENPBP07199 599 aaPredicted RBP30.14■■■□□ 2.42
UBE2D3-216ENST00000503742 UHRF1BP1Q6BDS2 1440 aa30.14■■■□□ 2.42
UBE2D3-216ENST00000503742 DEPDC5O75140 1603 aa30.14■■■□□ 2.42
UBE2D3-216ENST00000503742 ATP10AO60312 1499 aa30.12■■■□□ 2.41
UBE2D3-216ENST00000503742 RIMBP3CA6NJZ7 1639 aa30.11■■■□□ 2.41
UBE2D3-216ENST00000503742 RIMBP3BA6NNM3 1639 aa30.11■■■□□ 2.41
UBE2D3-216ENST00000503742 RIMBP3Q9UFD9 1639 aa30.11■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms