RNA–Protein interactions for RNA: ENST00000503427.5

HMGXB3-202, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,275 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-202ENST00000503427 CASC1Q6TDU7 716 aa20.89■□□□□ 0.94
HMGXB3-202ENST00000503427 PNNQ9H307 717 aaKnown RBP20.89■□□□□ 0.94
HMGXB3-202ENST00000503427 FOXD1Q16676 465 aa20.88■□□□□ 0.93
HMGXB3-202ENST00000503427 FGD5Q6ZNL6 1462 aa20.88■□□□□ 0.93
HMGXB3-202ENST00000503427 ERICH6BQ5W0A0 696 aa20.88■□□□□ 0.93
HMGXB3-202ENST00000503427 LAS1LQ9Y4W2 734 aaKnown RBP20.88■□□□□ 0.93
HMGXB3-202ENST00000503427 CYB5RLQ6IPT4 315 aa20.87■□□□□ 0.93
HMGXB3-202ENST00000503427 MS4A1P11836 297 aa20.87■□□□□ 0.93
HMGXB3-202ENST00000503427 OSCARQ8IYS5 282 aa20.87■□□□□ 0.93
HMGXB3-202ENST00000503427 CHMP4BQ9H444 224 aaKnown RBP20.86■□□□□ 0.93
HMGXB3-202ENST00000503427 A0A0G2JS52 829 aa20.84■□□□□ 0.93
HMGXB3-202ENST00000503427 FRAT1Q92837 279 aaPredicted RBP20.84■□□□□ 0.93
HMGXB3-202ENST00000503427 IGF1RP08069 1367 aa20.84■□□□□ 0.93
HMGXB3-202ENST00000503427 GAPVD1Q14C86 1478 aa20.84■□□□□ 0.93
HMGXB3-202ENST00000503427 HNRNPMP52272 730 aaKnown RBP eCLIP20.84■□□□□ 0.93
HMGXB3-202ENST00000503427 SRPK2P78362 688 aaKnown RBP20.84■□□□□ 0.93
HMGXB3-202ENST00000503427 SPAG9O60271 1321 aaKnown RBP20.84■□□□□ 0.93
HMGXB3-202ENST00000503427 TNNT2P45379 298 aaPredicted RBP20.84■□□□□ 0.93
HMGXB3-202ENST00000503427 RBM19Q9Y4C8 960 aaKnown RBP20.82■□□□□ 0.92
HMGXB3-202ENST00000503427 ROCK2O75116 1388 aaKnown RBP20.81■□□□□ 0.92
HMGXB3-202ENST00000503427 KIF3BO15066 747 aa20.81■□□□□ 0.92
HMGXB3-202ENST00000503427 PTPRGP23470 1445 aa20.8■□□□□ 0.92
HMGXB3-202ENST00000503427 U2SURPO15042 1029 aaKnown RBP20.8■□□□□ 0.92
HMGXB3-202ENST00000503427 MORC1Q86VD1 984 aa20.79■□□□□ 0.92
HMGXB3-202ENST00000503427 LMOD2Q6P5Q4 547 aa20.78■□□□□ 0.92
HMGXB3-202ENST00000503427 KTN1Q86UP2 1357 aaKnown RBP20.78■□□□□ 0.92
HMGXB3-202ENST00000503427 AEBP2Q6ZN18 517 aaPredicted RBP20.77■□□□□ 0.92
HMGXB3-202ENST00000503427 PTMAP06454 111 aaKnown RBP20.76■□□□□ 0.91
HMGXB3-202ENST00000503427 EIF3AQ14152 1382 aaKnown RBP20.75■□□□□ 0.91
HMGXB3-202ENST00000503427 L3MBTL2Q969R5 705 aa20.74■□□□□ 0.91
HMGXB3-202ENST00000503427 RAD54L2Q9Y4B4 1467 aa20.74■□□□□ 0.91
HMGXB3-202ENST00000503427 HDGFL2Q7Z4V5 671 aaPredicted RBP20.74■□□□□ 0.91
HMGXB3-202ENST00000503427 SAFB2Q14151 953 aaKnown RBP eCLIP20.72■□□□□ 0.91
HMGXB3-202ENST00000503427 RALBP1Q15311 655 aa20.72■□□□□ 0.91
HMGXB3-202ENST00000503427 STK26Q9P289 416 aa20.71■□□□□ 0.91
HMGXB3-202ENST00000503427 HSP90AB1P08238 724 aaKnown RBP20.7■□□□□ 0.9
HMGXB3-202ENST00000503427 ZRSR1Q15695 479 aaKnown RBP20.68■□□□□ 0.9
HMGXB3-202ENST00000503427 WASHC2CQ9Y4E1 1318 aa20.68■□□□□ 0.9
HMGXB3-202ENST00000503427 CFTRP13569 1480 aa20.66■□□□□ 0.9
HMGXB3-202ENST00000503427 DHX57Q6P158 1386 aaKnown RBP20.66■□□□□ 0.9
HMGXB3-202ENST00000503427 DNTTIP2Q5QJE6 756 aaKnown RBP20.65■□□□□ 0.9
HMGXB3-202ENST00000503427 HSCBQ8IWL3 235 aa20.64■□□□□ 0.89
HMGXB3-202ENST00000503427 DEKP35659 375 aaKnown RBP20.64■□□□□ 0.89
HMGXB3-202ENST00000503427 RCAN3Q9UKA8 241 aa20.63■□□□□ 0.89
HMGXB3-202ENST00000503427 RTN4Q9NQC3 1192 aaKnown RBP20.63■□□□□ 0.89
HMGXB3-202ENST00000503427 NAP1L5Q96NT1 182 aaPredicted RBP20.63■□□□□ 0.89
HMGXB3-202ENST00000503427 CCDC144AA2RUR9 1427 aa20.61■□□□□ 0.89
HMGXB3-202ENST00000503427 CDK11BP21127 795 aaKnown RBP20.61■□□□□ 0.89
HMGXB3-202ENST00000503427 TCERG1O14776 1098 aaKnown RBP20.61■□□□□ 0.89
HMGXB3-202ENST00000503427 MYOM3Q5VTT5 1437 aa20.6■□□□□ 0.89
HMGXB3-202ENST00000503427 L1TD1Q5T7N2 865 aaKnown RBP20.6■□□□□ 0.89
HMGXB3-202ENST00000503427 TSHZ2Q9NRE2 1034 aa20.59■□□□□ 0.89
HMGXB3-202ENST00000503427 HMGXB3Q12766 1538 aa20.58■□□□□ 0.89
HMGXB3-202ENST00000503427 CFAP44Q96MT7 982 aa20.58■□□□□ 0.89
HMGXB3-202ENST00000503427 CUX1P39880 1505 aa20.58■□□□□ 0.89
HMGXB3-202ENST00000503427 UACAQ9BZF9 1416 aa20.58■□□□□ 0.88
HMGXB3-202ENST00000503427 ERICH3Q5RHP9 1530 aa20.57■□□□□ 0.88
HMGXB3-202ENST00000503427 AQRO60306 1485 aaKnown RBP eCLIP20.57■□□□□ 0.886e-7■■■■■ 36.5
HMGXB3-202ENST00000503427 GRIN2BQ13224 1484 aa20.57■□□□□ 0.88
HMGXB3-202ENST00000503427 TERF2IPQ9NYB0 399 aa20.57■□□□□ 0.88
HMGXB3-202ENST00000503427 KIF21BO75037 1637 aa20.56■□□□□ 0.88
HMGXB3-202ENST00000503427 SOX12O15370 315 aa20.56■□□□□ 0.88
HMGXB3-202ENST00000503427 EID1Q9Y6B2 187 aa20.55■□□□□ 0.88
HMGXB3-202ENST00000503427 CALD1Q05682 793 aaKnown RBP20.55■□□□□ 0.88
HMGXB3-202ENST00000503427 TPRNQ4KMQ1 711 aa20.55■□□□□ 0.88
HMGXB3-202ENST00000503427 FGD6Q6ZV73 1430 aa20.54■□□□□ 0.88
HMGXB3-202ENST00000503427 RTF1Q92541 710 aaKnown RBP20.54■□□□□ 0.88
HMGXB3-202ENST00000503427 DNAJC5BQ9UF47 199 aa20.54■□□□□ 0.88
HMGXB3-202ENST00000503427 U2AF1L5P0DN76 240 aaPredicted RBP20.53■□□□□ 0.88
HMGXB3-202ENST00000503427 U2AF1Q01081 240 aaKnown RBP eCLIP20.53■□□□□ 0.887e-7■□□□□ 9.7
HMGXB3-202ENST00000503427 OS9Q13438 667 aaPredicted RBP20.53■□□□□ 0.88
HMGXB3-202ENST00000503427 IPO8O15397 1037 aaKnown RBP20.53■□□□□ 0.88
HMGXB3-202ENST00000503427 CASKIN1Q8WXD9 1431 aa20.52■□□□□ 0.88
HMGXB3-202ENST00000503427 NLRP13Q86W25 1043 aa20.52■□□□□ 0.88
HMGXB3-202ENST00000503427 PLCB2Q00722 1185 aa20.5■□□□□ 0.87
HMGXB3-202ENST00000503427 LRRC9Q6ZRR7 1453 aa20.49■□□□□ 0.87
HMGXB3-202ENST00000503427 SYNJ1O43426 1573 aa20.49■□□□□ 0.87
HMGXB3-202ENST00000503427 PDE3BQ13370 1112 aa20.49■□□□□ 0.87
HMGXB3-202ENST00000503427 RWDD1Q9H446 243 aaPredicted RBP20.49■□□□□ 0.87
HMGXB3-202ENST00000503427 MCCP23508 829 aa20.48■□□□□ 0.87
HMGXB3-202ENST00000503427 KCNJ4P48050 445 aa20.48■□□□□ 0.87
HMGXB3-202ENST00000503427 PHLDB1Q86UU1 1377 aa20.48■□□□□ 0.87
HMGXB3-202ENST00000503427 FGD1P98174 961 aa20.47■□□□□ 0.87
HMGXB3-202ENST00000503427 VGFO15240 615 aaPredicted RBP20.47■□□□□ 0.87
HMGXB3-202ENST00000503427 MRC2Q9UBG0 1479 aa20.46■□□□□ 0.87
HMGXB3-202ENST00000503427 KIF15Q9NS87 1388 aa20.46■□□□□ 0.87
HMGXB3-202ENST00000503427 ST20-MTHFSA0A0A6YYL1 179 aa20.46■□□□□ 0.87
HMGXB3-202ENST00000503427 FYCO1Q9BQS8 1478 aa20.45■□□□□ 0.86
HMGXB3-202ENST00000503427 GOLGA6L6A8MZA4 724 aa20.45■□□□□ 0.86
HMGXB3-202ENST00000503427 CC2D2AQ9P2K1 1620 aa20.45■□□□□ 0.86
HMGXB3-202ENST00000503427 PAK3O75914 559 aaPredicted RBP20.45■□□□□ 0.86
HMGXB3-202ENST00000503427 IPO9Q96P70 1041 aaKnown RBP20.45■□□□□ 0.86
HMGXB3-202ENST00000503427 TOP2BQ02880 1626 aa20.44■□□□□ 0.86
HMGXB3-202ENST00000503427 CHMP4AQ9BY43 222 aa20.44■□□□□ 0.86
HMGXB3-202ENST00000503427 SPRYD3Q8NCJ5 442 aa20.43■□□□□ 0.86
HMGXB3-202ENST00000503427 IFT140Q96RY7 1462 aa20.43■□□□□ 0.86
HMGXB3-202ENST00000503427 PTMSP20962 102 aa20.42■□□□□ 0.86
HMGXB3-202ENST00000503427 TRAK1Q9UPV9 953 aa20.42■□□□□ 0.86
HMGXB3-202ENST00000503427 GOLGA6L4A6NEF3 574 aa20.42■□□□□ 0.86
HMGXB3-202ENST00000503427 PMFBP1Q8TBY8 1022 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms