RNA–Protein interactions for RNA: ENST00000498077.6

XRN1-214, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 5

Gene XRN1, Length 5,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-214ENST00000498077 HMGXB3Q12766 1538 aa2.34□□□□□ -2.03
XRN1-214ENST00000498077 CLASP1Q7Z460 1538 aa2.34□□□□□ -2.03
XRN1-214ENST00000498077 ZNF316A6NFI3 1004 aaPredicted RBP2.34□□□□□ -2.04
XRN1-214ENST00000498077 TSPYL2Q9H2G4 693 aaPredicted RBP2.34□□□□□ -2.04
XRN1-214ENST00000498077 CREBZFQ9NS37 354 aa2.34□□□□□ -2.04
XRN1-214ENST00000498077 GABBR2O75899 941 aa2.33□□□□□ -2.04
XRN1-214ENST00000498077 EIF2AK3Q9NZJ5 1116 aaKnown RBP2.33□□□□□ -2.04
XRN1-214ENST00000498077 TIE1P35590 1138 aa2.33□□□□□ -2.04
XRN1-214ENST00000498077 C1QTNF8P60827 252 aa2.33□□□□□ -2.04
XRN1-214ENST00000498077 KIF21AQ7Z4S6 1674 aa2.33□□□□□ -2.04
XRN1-214ENST00000498077 KIAA0586Q9BVV6 1533 aa2.33□□□□□ -2.04
XRN1-214ENST00000498077 WDR97A6NE52 1622 aa2.33□□□□□ -2.04
XRN1-214ENST00000498077 LHX8Q68G74 356 aa2.33□□□□□ -2.04
XRN1-214ENST00000498077 CIZ1Q9ULV3 898 aaPredicted RBP2.33□□□□□ -2.04
XRN1-214ENST00000498077 RAPGEF6Q8TEU7 1601 aa2.32□□□□□ -2.04
XRN1-214ENST00000498077 MKRN4PQ13434 485 aaPredicted RBP2.32□□□□□ -2.04
XRN1-214ENST00000498077 KCNH8Q96L42 1107 aa2.32□□□□□ -2.04
XRN1-214ENST00000498077 ZNF608Q9ULD9 1512 aaPredicted RBP2.32□□□□□ -2.04
XRN1-214ENST00000498077 TBC1D12O60347 775 aa2.32□□□□□ -2.04
XRN1-214ENST00000498077 CHADLQ6NUI6 762 aa2.32□□□□□ -2.04
XRN1-214ENST00000498077 UPF1Q92900 1129 aaKnown RBP eCLIP2.32□□□□□ -2.04
XRN1-214ENST00000498077 DIP2BQ9P265 1576 aa2.31□□□□□ -2.04
XRN1-214ENST00000498077 TEX14Q8IWB6 1497 aa2.31□□□□□ -2.04
XRN1-214ENST00000498077 C3orf67Q6ZVT6 689 aa2.31□□□□□ -2.04
XRN1-214ENST00000498077 GAPVD1Q14C86 1478 aa2.31□□□□□ -2.04
XRN1-214ENST00000498077 YEATS2Q9ULM3 1422 aa2.31□□□□□ -2.04
XRN1-214ENST00000498077 ADAMTSL3P82987 1691 aa2.31□□□□□ -2.04
XRN1-214ENST00000498077 PTPRMP28827 1452 aa2.3□□□□□ -2.04
XRN1-214ENST00000498077 IFT140Q96RY7 1462 aa2.3□□□□□ -2.04
XRN1-214ENST00000498077 CHRM1P11229 460 aaPredicted RBP2.3□□□□□ -2.04
XRN1-214ENST00000498077 PCDHB13Q9Y5F0 798 aa2.3□□□□□ -2.04
XRN1-214ENST00000498077 GLI2P10070 1586 aa2.3□□□□□ -2.04
XRN1-214ENST00000498077 SLC51AQ86UW1 340 aa2.29□□□□□ -2.04
XRN1-214ENST00000498077 PDAP1Q13442 181 aaKnown RBP2.29□□□□□ -2.04
XRN1-214ENST00000498077 CCDC125Q86Z20 511 aa2.29□□□□□ -2.04
XRN1-214ENST00000498077 CHD1O14646 1710 aa2.29□□□□□ -2.04
XRN1-214ENST00000498077 TNS4Q8IZW8 715 aa2.28□□□□□ -2.04
XRN1-214ENST00000498077 NBPF26B4DH59 902 aa2.28□□□□□ -2.04
XRN1-214ENST00000498077 RDXP35241 583 aaKnown RBP2.28□□□□□ -2.04
XRN1-214ENST00000498077 DOK7Q18PE1 504 aa2.28□□□□□ -2.04
XRN1-214ENST00000498077 PTGER2P43116 358 aa2.28□□□□□ -2.04
XRN1-214ENST00000498077 VASPP50552 380 aaPredicted RBP2.28□□□□□ -2.04
XRN1-214ENST00000498077 GCC1Q96CN9 775 aa2.28□□□□□ -2.05
XRN1-214ENST00000498077 VGFO15240 615 aaPredicted RBP2.27□□□□□ -2.05
XRN1-214ENST00000498077 PTPRKQ15262 1439 aa2.27□□□□□ -2.05
XRN1-214ENST00000498077 ZNF710Q8N1W2 664 aa2.27□□□□□ -2.05
XRN1-214ENST00000498077 GTF3C3Q9Y5Q9 886 aa2.27□□□□□ -2.05
XRN1-214ENST00000498077 RRP12Q5JTH9 1297 aaKnown RBP2.27□□□□□ -2.05
XRN1-214ENST00000498077 MPNDQ8N594 471 aa2.27□□□□□ -2.05
XRN1-214ENST00000498077 PELP1Q8IZL8 1130 aaKnown RBP2.27□□□□□ -2.05
XRN1-214ENST00000498077 TMEM106CQ9BVX2 250 aa2.27□□□□□ -2.05
XRN1-214ENST00000498077 SOX12O15370 315 aa2.27□□□□□ -2.05
XRN1-214ENST00000498077 NLRP6P59044 892 aa2.27□□□□□ -2.05
XRN1-214ENST00000498077 OCEL1Q9H607 264 aa2.27□□□□□ -2.05
XRN1-214ENST00000498077 TSC1Q92574 1164 aa2.26□□□□□ -2.05
XRN1-214ENST00000498077 PSEN1P49768 467 aa2.26□□□□□ -2.05
XRN1-214ENST00000498077 PROM2Q8N271 834 aa2.26□□□□□ -2.05
XRN1-214ENST00000498077 CHMP7Q8WUX9 453 aaPredicted RBP2.26□□□□□ -2.05
XRN1-214ENST00000498077 METRNQ9UJH8 293 aa2.26□□□□□ -2.05
XRN1-214ENST00000498077 PSDA5PKW4 1024 aaPredicted RBP2.26□□□□□ -2.05
XRN1-214ENST00000498077 IRAK1P51617 712 aa2.26□□□□□ -2.05
XRN1-214ENST00000498077 PREX1Q8TCU6 1659 aa2.26□□□□□ -2.05
XRN1-214ENST00000498077 KIAA1210Q9ULL0 1709 aa2.25□□□□□ -2.05
XRN1-214ENST00000498077 TOM1O60784 492 aa2.25□□□□□ -2.05
XRN1-214ENST00000498077 PHF12Q96QT6 1004 aa2.25□□□□□ -2.05
XRN1-214ENST00000498077 SLC4A3P48751 1232 aa2.25□□□□□ -2.05
XRN1-214ENST00000498077 CUX1P39880 1505 aa2.25□□□□□ -2.05
XRN1-214ENST00000498077 UBAP1LF5GYI3 381 aa2.25□□□□□ -2.05
XRN1-214ENST00000498077 CPS1P31327 1500 aa2.25□□□□□ -2.05
XRN1-214ENST00000498077 DPF3Q92784 378 aa2.25□□□□□ -2.05
XRN1-214ENST00000498077 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP2.25□□□□□ -2.054e-7■■■□□ 18.3
XRN1-214ENST00000498077 COL26A1Q96A83 441 aa2.24□□□□□ -2.05
XRN1-214ENST00000498077 ATMINO43313 823 aaPredicted RBP2.24□□□□□ -2.05
XRN1-214ENST00000498077 KIF12Q96FN5 646 aa2.24□□□□□ -2.05
XRN1-214ENST00000498077 PPEF1O14829 653 aaPredicted RBP2.24□□□□□ -2.05
XRN1-214ENST00000498077 FAM163AQ96GL9 167 aaPredicted RBP2.24□□□□□ -2.05
XRN1-214ENST00000498077 ARID3AQ99856 593 aa2.24□□□□□ -2.05
XRN1-214ENST00000498077 RIOK3O14730 519 aaKnown RBP2.23□□□□□ -2.05
XRN1-214ENST00000498077 ECM2O94769 699 aaPredicted RBP2.23□□□□□ -2.05
XRN1-214ENST00000498077 FAM69CQ0P6D2 419 aa2.23□□□□□ -2.05
XRN1-214ENST00000498077 EPRSP07814 1512 aaKnown RBP2.23□□□□□ -2.05
XRN1-214ENST00000498077 TMC2Q8TDI7 906 aa2.23□□□□□ -2.05
XRN1-214ENST00000498077 TMEM121BQ9BXQ6 578 aaPredicted RBP2.23□□□□□ -2.05
XRN1-214ENST00000498077 ZSWIM6Q9HCJ5 1215 aa2.23□□□□□ -2.05
XRN1-214ENST00000498077 ASTLQ6HA08 431 aaPredicted RBP2.23□□□□□ -2.05
XRN1-214ENST00000498077 SLAIN1Q8ND83 568 aa2.23□□□□□ -2.05
XRN1-214ENST00000498077 NECTIN2Q92692 538 aa2.23□□□□□ -2.05
XRN1-214ENST00000498077 ATAD2Q6PL18 1390 aa2.23□□□□□ -2.05
XRN1-214ENST00000498077 GIGYF1O75420 1035 aaPredicted RBP2.23□□□□□ -2.05
XRN1-214ENST00000498077 MS4A3Q96HJ5 214 aa2.23□□□□□ -2.05
XRN1-214ENST00000498077 PPP1R1BQ9UD71 204 aaPredicted RBP2.23□□□□□ -2.05
XRN1-214ENST00000498077 NINLQ9Y2I6 1382 aa2.23□□□□□ -2.05
XRN1-214ENST00000498077 RGS12O14924 1447 aa2.22□□□□□ -2.05
XRN1-214ENST00000498077 ZBTB4Q9P1Z0 1013 aaPredicted RBP2.22□□□□□ -2.05
XRN1-214ENST00000498077 KIAA0556O60303 1618 aa2.22□□□□□ -2.05
XRN1-214ENST00000498077 RBAK-RBAKDNI3L0D1 243 aa2.22□□□□□ -2.05
XRN1-214ENST00000498077 ZNF772Q68DY9 489 aaPredicted RBP2.22□□□□□ -2.05
XRN1-214ENST00000498077 GOLGA8CPA6NN73 597 aa2.22□□□□□ -2.05
XRN1-214ENST00000498077 NUBP1P53384 320 aa2.22□□□□□ -2.05
XRN1-214ENST00000498077 BCORL1Q5H9F3 1711 aa2.21□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms