RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 DAPK1P53355 1430 aa15.82■□□□□ 0.12
CHMP3-209ENST00000494623 ABCC5O15440 1437 aa15.81■□□□□ 0.12
CHMP3-209ENST00000494623 PLB1Q6P1J6 1458 aa15.81■□□□□ 0.12
CHMP3-209ENST00000494623 CEP170Q5SW79 1584 aa15.81■□□□□ 0.12
CHMP3-209ENST00000494623 CFDP1Q9UEE9 299 aaPredicted RBP15.81■□□□□ 0.12
CHMP3-209ENST00000494623 ZNF777Q9ULD5 760 aaPredicted RBP15.81■□□□□ 0.12
CHMP3-209ENST00000494623 MYT1Q01538 1121 aa15.8■□□□□ 0.12
CHMP3-209ENST00000494623 KDM5BQ9UGL1 1544 aa15.78■□□□□ 0.12
CHMP3-209ENST00000494623 ROCK1Q13464 1354 aa15.78■□□□□ 0.12
CHMP3-209ENST00000494623 CARMIL2Q6F5E8 1435 aa15.78■□□□□ 0.12
CHMP3-209ENST00000494623 L3MBTL2Q969R5 705 aa15.78■□□□□ 0.12
CHMP3-209ENST00000494623 TROQ12816 1431 aaPredicted RBP15.77■□□□□ 0.12
CHMP3-209ENST00000494623 SUPT16HQ9Y5B9 1047 aaKnown RBP15.77■□□□□ 0.12
CHMP3-209ENST00000494623 HSPA5P11021 654 aaKnown RBP15.76■□□□□ 0.11
CHMP3-209ENST00000494623 SLC4A1APQ9BWU0 796 aaKnown RBP15.76■□□□□ 0.11
CHMP3-209ENST00000494623 CCER2I3L3R5 266 aa15.76■□□□□ 0.11
CHMP3-209ENST00000494623 DNMT1P26358 1616 aaKnown RBP15.74■□□□□ 0.11
CHMP3-209ENST00000494623 NUP160Q12769 1436 aa15.73■□□□□ 0.11
CHMP3-209ENST00000494623 PLEKHD1A6NEE1 506 aa15.73■□□□□ 0.11
CHMP3-209ENST00000494623 EIF4G2P78344 907 aaKnown RBP eCLIP15.73■□□□□ 0.11
CHMP3-209ENST00000494623 GPATCH8Q9UKJ3 1502 aaKnown RBP15.72■□□□□ 0.11
CHMP3-209ENST00000494623 ANKRD30BQ9BXX2 1392 aa15.71■□□□□ 0.11
CHMP3-209ENST00000494623 CAMSAP2Q08AD1 1489 aa15.71■□□□□ 0.11
CHMP3-209ENST00000494623 WASHC2AQ641Q2 1341 aa15.7■□□□□ 0.1
CHMP3-209ENST00000494623 KIF14Q15058 1648 aa15.69■□□□□ 0.1
CHMP3-209ENST00000494623 NBPF8Q3BBV2 869 aa15.67■□□□□ 0.1
CHMP3-209ENST00000494623 NCOA1Q15788 1441 aa15.67■□□□□ 0.1
CHMP3-209ENST00000494623 RPRD2Q5VT52 1461 aaKnown RBP15.66■□□□□ 0.1
CHMP3-209ENST00000494623 ATP10BO94823 1461 aa15.65■□□□□ 0.1
CHMP3-209ENST00000494623 ITSN2Q9NZM3 1697 aa15.64■□□□□ 0.09
CHMP3-209ENST00000494623 C11orf95C9JLR9 678 aaPredicted RBP15.63■□□□□ 0.09
CHMP3-209ENST00000494623 ANKRD30AQ9BXX3 1397 aa15.63■□□□□ 0.09
CHMP3-209ENST00000494623 PKD2Q13563 968 aa15.62■□□□□ 0.09
CHMP3-209ENST00000494623 ADCY10Q96PN6 1610 aa15.62■□□□□ 0.09
CHMP3-209ENST00000494623 ABCA8O94911 1581 aa15.62■□□□□ 0.09
CHMP3-209ENST00000494623 PZPP20742 1482 aa15.62■□□□□ 0.09
CHMP3-209ENST00000494623 PTPRGP23470 1445 aa15.61■□□□□ 0.09
CHMP3-209ENST00000494623 TSPY4P0CV99 314 aa15.6■□□□□ 0.09
CHMP3-209ENST00000494623 TSPY10P0CW01 314 aa15.6■□□□□ 0.09
CHMP3-209ENST00000494623 FKBP8Q14318 412 aa15.6■□□□□ 0.09
CHMP3-209ENST00000494623 HNRNPMP52272 730 aaKnown RBP eCLIP15.6■□□□□ 0.09
CHMP3-209ENST00000494623 BCANQ96GW7 911 aa15.6■□□□□ 0.09
CHMP3-209ENST00000494623 TEX14Q8IWB6 1497 aa15.59■□□□□ 0.09
CHMP3-209ENST00000494623 ADGRL2O95490 1459 aa15.58■□□□□ 0.09
CHMP3-209ENST00000494623 ANKRD50Q9ULJ7 1429 aa15.58■□□□□ 0.08
CHMP3-209ENST00000494623 ZNF326Q5BKZ1 582 aaKnown RBP15.58■□□□□ 0.08
CHMP3-209ENST00000494623 ABCC10Q5T3U5 1492 aa15.58■□□□□ 0.08
CHMP3-209ENST00000494623 KIAA1107Q9UPP5 1409 aa15.57■□□□□ 0.08
CHMP3-209ENST00000494623 ADGBQ8N7X0 1667 aa15.57■□□□□ 0.08
CHMP3-209ENST00000494623 CCDC7Q96M83 1385 aa15.57■□□□□ 0.08
CHMP3-209ENST00000494623 NUP155O75694 1391 aa15.56■□□□□ 0.08
CHMP3-209ENST00000494623 HNRNPUQ00839 825 aaKnown RBP eCLIP15.55■□□□□ 0.08
CHMP3-209ENST00000494623 CDC42BPAQ5VT25 1732 aa15.55■□□□□ 0.08
CHMP3-209ENST00000494623 C9orf84Q5VXU9 1444 aa15.55■□□□□ 0.08
CHMP3-209ENST00000494623 CNTLNQ9NXG0 1405 aa15.54■□□□□ 0.08
CHMP3-209ENST00000494623 CROCC2H7BZ55 1655 aa15.54■□□□□ 0.08
CHMP3-209ENST00000494623 NEFLP07196 543 aa15.53■□□□□ 0.08
CHMP3-209ENST00000494623 CCDC184Q52MB2 194 aa15.52■□□□□ 0.08
CHMP3-209ENST00000494623 KIF7Q2M1P5 1343 aa15.52■□□□□ 0.07
CHMP3-209ENST00000494623 SPATA31E1Q6ZUB1 1445 aa15.51■□□□□ 0.07
CHMP3-209ENST00000494623 POLR3GLQ9BT43 218 aa15.5■□□□□ 0.07
CHMP3-209ENST00000494623 PRKRIP1Q9H875 184 aaPredicted RBP15.5■□□□□ 0.07
CHMP3-209ENST00000494623 KIF15Q9NS87 1388 aa15.49■□□□□ 0.07
CHMP3-209ENST00000494623 KDM2AQ9Y2K7 1162 aa15.48■□□□□ 0.07
CHMP3-209ENST00000494623 SHANK2Q9UPX8 1470 aa15.48■□□□□ 0.07
CHMP3-209ENST00000494623 CNGB1Q14028 1251 aaPredicted RBP15.47■□□□□ 0.07
CHMP3-209ENST00000494623 FAM9BQ8IZU0 186 aa15.47■□□□□ 0.07
CHMP3-209ENST00000494623 MBD5Q9P267 1494 aa15.47■□□□□ 0.07
CHMP3-209ENST00000494623 MRS2Q9HD23 443 aa15.46■□□□□ 0.07
CHMP3-209ENST00000494623 CHD1O14646 1710 aa15.45■□□□□ 0.06
CHMP3-209ENST00000494623 USP47Q96K76 1375 aa15.45■□□□□ 0.06
CHMP3-209ENST00000494623 RSPH4AQ5TD94 716 aa15.45■□□□□ 0.06
CHMP3-209ENST00000494623 TSHZ2Q9NRE2 1034 aa15.44■□□□□ 0.06
CHMP3-209ENST00000494623 DCAF11Q8TEB1 546 aa15.43■□□□□ 0.06
CHMP3-209ENST00000494623 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.42■□□□□ 0.065e-9■■■■■ 28.6
CHMP3-209ENST00000494623 CARD11Q9BXL7 1154 aa15.42■□□□□ 0.06
CHMP3-209ENST00000494623 CCDC141Q6ZP82 1450 aa15.42■□□□□ 0.06
CHMP3-209ENST00000494623 SAMD9LQ8IVG5 1584 aa15.42■□□□□ 0.06
CHMP3-209ENST00000494623 ARHGEF5Q12774 1597 aa15.42■□□□□ 0.06
CHMP3-209ENST00000494623 CDC42BPBQ9Y5S2 1711 aa15.41■□□□□ 0.06
CHMP3-209ENST00000494623 ERCC6L2Q5T890 1561 aa15.4■□□□□ 0.06
CHMP3-209ENST00000494623 ARHGAP5Q13017 1502 aa15.39■□□□□ 0.05
CHMP3-209ENST00000494623 PREX2Q70Z35 1606 aa15.38■□□□□ 0.05
CHMP3-209ENST00000494623 KDM5DQ9BY66 1539 aa15.38■□□□□ 0.05
CHMP3-209ENST00000494623 UHRF1BP1Q6BDS2 1440 aa15.38■□□□□ 0.05
CHMP3-209ENST00000494623 IRX6P78412 446 aaPredicted RBP15.37■□□□□ 0.05
CHMP3-209ENST00000494623 SYCP2Q9BX26 1530 aa15.37■□□□□ 0.05
CHMP3-209ENST00000494623 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.37■□□□□ 0.05
CHMP3-209ENST00000494623 RGL3Q3MIN7 710 aa15.37■□□□□ 0.05
CHMP3-209ENST00000494623 ST20-MTHFSA0A0A6YYL1 179 aa15.36■□□□□ 0.05
CHMP3-209ENST00000494623 TTC37Q6PGP7 1564 aa15.36■□□□□ 0.05
CHMP3-209ENST00000494623 BCORL1Q5H9F3 1711 aa15.36■□□□□ 0.05
CHMP3-209ENST00000494623 SHROOM2Q13796 1616 aa15.36■□□□□ 0.05
CHMP3-209ENST00000494623 FAM135AQ9P2D6 1515 aa15.35■□□□□ 0.05
CHMP3-209ENST00000494623 DHX29Q7Z478 1369 aaKnown RBP15.34■□□□□ 0.05
CHMP3-209ENST00000494623 POLR1AO95602 1720 aaPredicted RBP15.34■□□□□ 0.05
CHMP3-209ENST00000494623 RALGAPBQ86X10 1494 aa15.34■□□□□ 0.05
CHMP3-209ENST00000494623 KDM5CP41229 1560 aa15.34■□□□□ 0.05
CHMP3-209ENST00000494623 ABCC2Q92887 1545 aa15.34■□□□□ 0.05
CHMP3-209ENST00000494623 ARID4BQ4LE39 1312 aaPredicted RBP15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 176.6 ms