RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 ZMYM4Q5VZL5 1548 aa15.85■□□□□ 0.13
UBR4-216ENST00000494503 CDK11AQ9UQ88 783 aaPredicted RBP15.85■□□□□ 0.13
UBR4-216ENST00000494503 FER1L4A9Z1Z3 1794 aa15.85■□□□□ 0.13
UBR4-216ENST00000494503 KIF14Q15058 1648 aa15.84■□□□□ 0.13
UBR4-216ENST00000494503 ARHGAP35Q9NRY4 1499 aa15.84■□□□□ 0.13
UBR4-216ENST00000494503 PLCH2O75038 1416 aa15.83■□□□□ 0.12
UBR4-216ENST00000494503 SIGLEC1Q9BZZ2 1709 aa15.82■□□□□ 0.12
UBR4-216ENST00000494503 LMTK3Q96Q04 1460 aa15.82■□□□□ 0.12
UBR4-216ENST00000494503 ARHGAP5Q13017 1502 aa15.82■□□□□ 0.12
UBR4-216ENST00000494503 CLIP1P30622 1438 aa15.81■□□□□ 0.12
UBR4-216ENST00000494503 HSPA2P54652 639 aa15.81■□□□□ 0.12
UBR4-216ENST00000494503 EFCAB2Q5VUJ9 269 aa15.81■□□□□ 0.12
UBR4-216ENST00000494503 MAGI2Q86UL8 1455 aa15.8■□□□□ 0.12
UBR4-216ENST00000494503 CHIC1Q5VXU3 224 aa15.8■□□□□ 0.12
UBR4-216ENST00000494503 FBXO41Q8TF61 875 aa15.79■□□□□ 0.12
UBR4-216ENST00000494503 LRRIQ1Q96JM4 1722 aa15.78■□□□□ 0.12
UBR4-216ENST00000494503 TROQ12816 1431 aaPredicted RBP15.77■□□□□ 0.11
UBR4-216ENST00000494503 ATP10AO60312 1499 aa15.76■□□□□ 0.11
UBR4-216ENST00000494503 C9orf84Q5VXU9 1444 aa15.76■□□□□ 0.11
UBR4-216ENST00000494503 ZNF518AQ6AHZ1 1483 aa15.74■□□□□ 0.11
UBR4-216ENST00000494503 AFAP1Q8N556 730 aa15.73■□□□□ 0.11
UBR4-216ENST00000494503 CDC42BPBQ9Y5S2 1711 aa15.71■□□□□ 0.11
UBR4-216ENST00000494503 CEBPAP49715 358 aaPredicted RBP15.7■□□□□ 0.1
UBR4-216ENST00000494503 CCDC18Q5T9S5 1454 aa15.7■□□□□ 0.1
UBR4-216ENST00000494503 PREX1Q8TCU6 1659 aa15.7■□□□□ 0.1
UBR4-216ENST00000494503 ARHGEF12Q9NZN5 1544 aa15.69■□□□□ 0.1
UBR4-216ENST00000494503 PREX2Q70Z35 1606 aa15.69■□□□□ 0.1
UBR4-216ENST00000494503 ESF1Q9H501 851 aaKnown RBP15.69■□□□□ 0.1
UBR4-216ENST00000494503 KDM5CP41229 1560 aa15.67■□□□□ 0.1
UBR4-216ENST00000494503 DIP2CQ9Y2E4 1556 aa15.67■□□□□ 0.1
UBR4-216ENST00000494503 ZNF777Q9ULD5 760 aaPredicted RBP15.67■□□□□ 0.1
UBR4-216ENST00000494503 CASKIN1Q8WXD9 1431 aa15.67■□□□□ 0.1
UBR4-216ENST00000494503 ABCA6Q8N139 1617 aa15.66■□□□□ 0.1
UBR4-216ENST00000494503 ITSN2Q9NZM3 1697 aa15.66■□□□□ 0.1
UBR4-216ENST00000494503 ABCC1P33527 1531 aa15.65■□□□□ 0.1
UBR4-216ENST00000494503 CDC42BPAQ5VT25 1732 aa15.65■□□□□ 0.1
UBR4-216ENST00000494503 UHRF1BP1Q6BDS2 1440 aa15.63■□□□□ 0.09
UBR4-216ENST00000494503 TRAPPC8Q9Y2L5 1435 aa15.62■□□□□ 0.09
UBR4-216ENST00000494503 FYCO1Q9BQS8 1478 aa15.62■□□□□ 0.09
UBR4-216ENST00000494503 C3P01024 1663 aa15.6■□□□□ 0.09
UBR4-216ENST00000494503 MLH3Q9UHC1 1453 aa15.6■□□□□ 0.09
UBR4-216ENST00000494503 CERKQ8TCT0 537 aa15.6■□□□□ 0.09
UBR4-216ENST00000494503 SETD1BQ9UPS6 1966 aaKnown RBP15.6■□□□□ 0.09
UBR4-216ENST00000494503 SYCP2Q9BX26 1530 aa15.58■□□□□ 0.09
UBR4-216ENST00000494503 REREQ9P2R6 1566 aa15.58■□□□□ 0.09
UBR4-216ENST00000494503 KIDINS220Q9ULH0 1771 aa15.58■□□□□ 0.08
UBR4-216ENST00000494503 SUPT6HQ7KZ85 1726 aaKnown RBP15.57■□□□□ 0.08
UBR4-216ENST00000494503 DMRT2Q9Y5R5 561 aa15.56■□□□□ 0.08
UBR4-216ENST00000494503 SAMD9LQ8IVG5 1584 aa15.56■□□□□ 0.08
UBR4-216ENST00000494503 STRCQ7RTU9 1775 aa15.55■□□□□ 0.08
UBR4-216ENST00000494503 SPAG9O60271 1321 aaKnown RBP15.55■□□□□ 0.08
UBR4-216ENST00000494503 HNRNPMP52272 730 aaKnown RBP eCLIP15.55■□□□□ 0.08
UBR4-216ENST00000494503 CFDP1Q9UEE9 299 aaPredicted RBP15.54■□□□□ 0.08
UBR4-216ENST00000494503 AGLP35573 1532 aa15.53■□□□□ 0.08
UBR4-216ENST00000494503 MTUS2Q5JR59 1369 aa15.53■□□□□ 0.08
UBR4-216ENST00000494503 CCNB3Q8WWL7 1395 aa15.53■□□□□ 0.08
UBR4-216ENST00000494503 GPATCH8Q9UKJ3 1502 aaKnown RBP15.52■□□□□ 0.07
UBR4-216ENST00000494503 CNTLNQ9NXG0 1405 aa15.51■□□□□ 0.07
UBR4-216ENST00000494503 ATP7AQ04656 1500 aa15.5■□□□□ 0.07
UBR4-216ENST00000494503 CLTCQ00610 1675 aaKnown RBP15.49■□□□□ 0.07
UBR4-216ENST00000494503 PLEKHH2Q8IVE3 1493 aa15.49■□□□□ 0.07
UBR4-216ENST00000494503 GGT6Q6P531 493 aa15.47■□□□□ 0.07
UBR4-216ENST00000494503 MROH2AA6NES4 1674 aa15.47■□□□□ 0.07
UBR4-216ENST00000494503 INO80Q9ULG1 1556 aaPredicted RBP15.46■□□□□ 0.07
UBR4-216ENST00000494503 A2MP01023 1474 aa15.46■□□□□ 0.06
UBR4-216ENST00000494503 EHBP1L1Q8N3D4 1523 aa15.44■□□□□ 0.06
UBR4-216ENST00000494503 CAMSAP1Q5T5Y3 1602 aa15.44■□□□□ 0.06
UBR4-216ENST00000494503 ZMYM3Q14202 1370 aa15.44■□□□□ 0.06
UBR4-216ENST00000494503 TIAM1Q13009 1591 aa15.44■□□□□ 0.06
UBR4-216ENST00000494503 ADGBQ8N7X0 1667 aa15.44■□□□□ 0.06
UBR4-216ENST00000494503 KIAA1107Q9UPP5 1409 aa15.43■□□□□ 0.06
UBR4-216ENST00000494503 PTPRTO14522 1441 aa15.43■□□□□ 0.06
UBR4-216ENST00000494503 ZNF644Q9H582 1327 aaPredicted RBP15.43■□□□□ 0.06
UBR4-216ENST00000494503 MYO3AQ8NEV4 1616 aa15.42■□□□□ 0.06
UBR4-216ENST00000494503 NPATQ14207 1427 aa15.42■□□□□ 0.06
UBR4-216ENST00000494503 NCOA1Q15788 1441 aa15.42■□□□□ 0.06
UBR4-216ENST00000494503 PLXNC1O60486 1568 aa15.41■□□□□ 0.06
UBR4-216ENST00000494503 DISP3Q9P2K9 1392 aa15.4■□□□□ 0.06
UBR4-216ENST00000494503 CEP162Q5TB80 1403 aa15.4■□□□□ 0.06
UBR4-216ENST00000494503 NCKAP5LQ9HCH0 1330 aa15.4■□□□□ 0.06
UBR4-216ENST00000494503 CEP170BQ9Y4F5 1589 aaPredicted RBP15.37■□□□□ 0.05
UBR4-216ENST00000494503 ZNF142P52746 1687 aaPredicted RBP15.37■□□□□ 0.05
UBR4-216ENST00000494503 LTBP4Q8N2S1 1624 aa15.35■□□□□ 0.05
UBR4-216ENST00000494503 PTPRKQ15262 1439 aa15.34■□□□□ 0.05
UBR4-216ENST00000494503 CAMSAP2Q08AD1 1489 aa15.34■□□□□ 0.05
UBR4-216ENST00000494503 KIF3BO15066 747 aa15.34■□□□□ 0.05
UBR4-216ENST00000494503 ZNF335Q9H4Z2 1342 aaPredicted RBP15.34■□□□□ 0.05
UBR4-216ENST00000494503 NCOA2Q15596 1464 aa15.33■□□□□ 0.05
UBR4-216ENST00000494503 CCDC141Q6ZP82 1450 aa15.33■□□□□ 0.05
UBR4-216ENST00000494503 MBD5Q9P267 1494 aa15.33■□□□□ 0.04
UBR4-216ENST00000494503 PKD2Q13563 968 aa15.31■□□□□ 0.04
UBR4-216ENST00000494503 SPATA31D1Q6ZQQ2 1576 aa15.31■□□□□ 0.04
UBR4-216ENST00000494503 UBAP1LF5GYI3 381 aa15.3■□□□□ 0.04
UBR4-216ENST00000494503 RTEL1-TNFRSF6BF6WH68 1400 aa15.3■□□□□ 0.04
UBR4-216ENST00000494503 PLA2R1Q13018 1463 aa15.3■□□□□ 0.04
UBR4-216ENST00000494503 DHX29Q7Z478 1369 aaKnown RBP15.3■□□□□ 0.04
UBR4-216ENST00000494503 PPP6R1Q9UPN7 881 aa15.3■□□□□ 0.04
UBR4-216ENST00000494503 SCAF1Q9H7N4 1312 aaKnown RBP15.29■□□□□ 0.04
UBR4-216ENST00000494503 WASHC2CQ9Y4E1 1318 aa15.29■□□□□ 0.04
UBR4-216ENST00000494503 KDM5DQ9BY66 1539 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms