RNA–Protein interactions for RNA: ENST00000492996.6

HERC4-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 3,385 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-211ENST00000492996 DEPDC5O75140 1603 aa11.43□□□□□ -0.58
HERC4-211ENST00000492996 TSPOAP1O95153 1857 aa11.43□□□□□ -0.58
HERC4-211ENST00000492996 ADGRL1O94910 1474 aa11.42□□□□□ -0.58
HERC4-211ENST00000492996 ZFYVE16Q7Z3T8 1539 aa11.42□□□□□ -0.58
HERC4-211ENST00000492996 PLCH2O75038 1416 aa11.41□□□□□ -0.58
HERC4-211ENST00000492996 POGZQ7Z3K3 1410 aa11.41□□□□□ -0.58
HERC4-211ENST00000492996 KIDINS220Q9ULH0 1771 aa11.41□□□□□ -0.58
HERC4-211ENST00000492996 KIAA1107Q9UPP5 1409 aa11.41□□□□□ -0.58
HERC4-211ENST00000492996 PTPN23Q9H3S7 1636 aa11.4□□□□□ -0.58
HERC4-211ENST00000492996 ABCA6Q8N139 1617 aa11.4□□□□□ -0.58
HERC4-211ENST00000492996 PLEKHH2Q8IVE3 1493 aa11.4□□□□□ -0.59
HERC4-211ENST00000492996 TRIM41Q8WV44 630 aa11.39□□□□□ -0.59
HERC4-211ENST00000492996 ARHGAP35Q9NRY4 1499 aa11.39□□□□□ -0.59
HERC4-211ENST00000492996 FAM9AQ8IZU1 332 aaPredicted RBP11.38□□□□□ -0.59
HERC4-211ENST00000492996 EHBP1L1Q8N3D4 1523 aa11.38□□□□□ -0.59
HERC4-211ENST00000492996 CYB5RLQ6IPT4 315 aa11.37□□□□□ -0.59
HERC4-211ENST00000492996 FANCAO15360 1455 aa11.36□□□□□ -0.59
HERC4-211ENST00000492996 RTEL1-TNFRSF6BF6WH68 1400 aa11.36□□□□□ -0.59
HERC4-211ENST00000492996 NPATQ14207 1427 aa11.35□□□□□ -0.59
HERC4-211ENST00000492996 CD109Q6YHK3 1445 aa11.35□□□□□ -0.59
HERC4-211ENST00000492996 EHMT2Q96KQ7 1210 aa11.35□□□□□ -0.59
HERC4-211ENST00000492996 C3P01024 1663 aa11.34□□□□□ -0.59
HERC4-211ENST00000492996 MADDQ8WXG6 1647 aa11.34□□□□□ -0.59
HERC4-211ENST00000492996 TROQ12816 1431 aaPredicted RBP11.34□□□□□ -0.59
HERC4-211ENST00000492996 SAMD9LQ8IVG5 1584 aa11.33□□□□□ -0.6
HERC4-211ENST00000492996 NCOA2Q15596 1464 aa11.33□□□□□ -0.6
HERC4-211ENST00000492996 C9orf84Q5VXU9 1444 aa11.33□□□□□ -0.6
HERC4-211ENST00000492996 ZNF518AQ6AHZ1 1483 aa11.32□□□□□ -0.6
HERC4-211ENST00000492996 VWDEQ8N2E2 1590 aa11.32□□□□□ -0.6
HERC4-211ENST00000492996 STRCQ7RTU9 1775 aa11.32□□□□□ -0.6
HERC4-211ENST00000492996 PCGF6Q9BYE7 350 aa11.31□□□□□ -0.6
HERC4-211ENST00000492996 SHANK2Q9UPX8 1470 aa11.31□□□□□ -0.6
HERC4-211ENST00000492996 LMTK2Q8IWU2 1503 aa11.3□□□□□ -0.6
HERC4-211ENST00000492996 POLR1AO95602 1720 aaPredicted RBP11.3□□□□□ -0.6
HERC4-211ENST00000492996 TIAM1Q13009 1591 aa11.3□□□□□ -0.6
HERC4-211ENST00000492996 PLA2R1Q13018 1463 aa11.3□□□□□ -0.6
HERC4-211ENST00000492996 DENND4BO75064 1496 aaPredicted RBP11.3□□□□□ -0.6
HERC4-211ENST00000492996 CEP162Q5TB80 1403 aa11.29□□□□□ -0.6
HERC4-211ENST00000492996 CNTLNQ9NXG0 1405 aa11.29□□□□□ -0.6
HERC4-211ENST00000492996 ATP10AO60312 1499 aa11.29□□□□□ -0.6
HERC4-211ENST00000492996 SYNMO15061 1565 aa11.28□□□□□ -0.6
HERC4-211ENST00000492996 RIMS1Q86UR5 1692 aaKnown RBP11.27□□□□□ -0.6
HERC4-211ENST00000492996 SUPT6HQ7KZ85 1726 aaKnown RBP11.27□□□□□ -0.6
HERC4-211ENST00000492996 AKNAQ7Z591 1439 aa11.27□□□□□ -0.61
HERC4-211ENST00000492996 PTPRTO14522 1441 aa11.27□□□□□ -0.61
HERC4-211ENST00000492996 NEURL4Q96JN8 1562 aa11.26□□□□□ -0.61
HERC4-211ENST00000492996 MYO3AQ8NEV4 1616 aa11.26□□□□□ -0.61
HERC4-211ENST00000492996 PELP1Q8IZL8 1130 aaKnown RBP11.25□□□□□ -0.61
HERC4-211ENST00000492996 TCOF1Q13428 1488 aaKnown RBP11.25□□□□□ -0.61
HERC4-211ENST00000492996 PTPRMP28827 1452 aa11.25□□□□□ -0.61
HERC4-211ENST00000492996 MROH1Q8NDA8 1641 aa11.24□□□□□ -0.61
HERC4-211ENST00000492996 PPP6R1Q9UPN7 881 aa11.22□□□□□ -0.61
HERC4-211ENST00000492996 PRDM15P57071 1507 aaPredicted RBP11.22□□□□□ -0.61
HERC4-211ENST00000492996 SPATA31D1Q6ZQQ2 1576 aa11.21□□□□□ -0.62
HERC4-211ENST00000492996 CLIP1P30622 1438 aa11.19□□□□□ -0.62
HERC4-211ENST00000492996 NPM1P06748 294 aaKnown RBP eCLIP11.19□□□□□ -0.62
HERC4-211ENST00000492996 KDM4FA0A1W2PPD8 638 aa11.19□□□□□ -0.62
HERC4-211ENST00000492996 CSRNP3Q8WYN3 585 aa11.19□□□□□ -0.62
HERC4-211ENST00000492996 ATP7AQ04656 1500 aa11.18□□□□□ -0.62
HERC4-211ENST00000492996 MED14O60244 1454 aa11.18□□□□□ -0.62
HERC4-211ENST00000492996 LAMC1P11047 1609 aa11.18□□□□□ -0.62
HERC4-211ENST00000492996 MBD5Q9P267 1494 aa11.17□□□□□ -0.62
HERC4-211ENST00000492996 NWD1Q149M9 1564 aa11.17□□□□□ -0.62
HERC4-211ENST00000492996 GCC2Q8IWJ2 1684 aa11.17□□□□□ -0.62
HERC4-211ENST00000492996 LTBP4Q8N2S1 1624 aa11.17□□□□□ -0.62
HERC4-211ENST00000492996 UNC13BO14795 1591 aa11.17□□□□□ -0.62
HERC4-211ENST00000492996 PRAG1Q86YV5 1406 aa11.16□□□□□ -0.62
HERC4-211ENST00000492996 PIK3C2BO00750 1634 aa11.16□□□□□ -0.62
HERC4-211ENST00000492996 ADGRL2O95490 1459 aa11.16□□□□□ -0.62
HERC4-211ENST00000492996 IQGAP3Q86VI3 1631 aa11.15□□□□□ -0.62
HERC4-211ENST00000492996 MIA2Q96PC5 1412 aa11.15□□□□□ -0.62
HERC4-211ENST00000492996 DNMT1P26358 1616 aaKnown RBP11.15□□□□□ -0.62
HERC4-211ENST00000492996 SETD1BQ9UPS6 1966 aaKnown RBP11.15□□□□□ -0.62
HERC4-211ENST00000492996 GPATCH8Q9UKJ3 1502 aaKnown RBP11.15□□□□□ -0.63
HERC4-211ENST00000492996 ARHGAP31Q2M1Z3 1444 aa11.14□□□□□ -0.63
HERC4-211ENST00000492996 UGGT1Q9NYU2 1555 aa11.14□□□□□ -0.63
HERC4-211ENST00000492996 FAM69CQ0P6D2 419 aa11.14□□□□□ -0.63
HERC4-211ENST00000492996 CDK13Q14004 1512 aaKnown RBP11.13□□□□□ -0.63
HERC4-211ENST00000492996 FBLN2P98095 1184 aa11.13□□□□□ -0.63
HERC4-211ENST00000492996 HRCP23327 699 aa11.12□□□□□ -0.63
HERC4-211ENST00000492996 CAMSAP1Q5T5Y3 1602 aa11.11□□□□□ -0.63
HERC4-211ENST00000492996 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.11□□□□□ -0.633e-7■■■□□ 17.8
HERC4-211ENST00000492996 SLIT1O75093 1534 aa11.09□□□□□ -0.63
HERC4-211ENST00000492996 DIP2AQ14689 1571 aa11.09□□□□□ -0.63
HERC4-211ENST00000492996 CLTCQ00610 1675 aaKnown RBP11.08□□□□□ -0.64
HERC4-211ENST00000492996 CPS1P31327 1500 aa11.08□□□□□ -0.64
HERC4-211ENST00000492996 UBR1Q8IWV7 1749 aa11.07□□□□□ -0.64
HERC4-211ENST00000492996 EFCAB6Q5THR3 1501 aa11.07□□□□□ -0.64
HERC4-211ENST00000492996 PZPP20742 1482 aa11.07□□□□□ -0.64
HERC4-211ENST00000492996 CEP170BQ9Y4F5 1589 aaPredicted RBP11.06□□□□□ -0.64
HERC4-211ENST00000492996 ARHGAP23Q9P227 1491 aa11.06□□□□□ -0.64
HERC4-211ENST00000492996 TRIM26Q12899 539 aaPredicted RBP11.06□□□□□ -0.64
HERC4-211ENST00000492996 NLRP1Q9C000 1473 aa11.05□□□□□ -0.64
HERC4-211ENST00000492996 NCOA1Q15788 1441 aa11.05□□□□□ -0.64
HERC4-211ENST00000492996 DUOX2Q9NRD8 1548 aa11.05□□□□□ -0.64
HERC4-211ENST00000492996 ERBINQ96RT1 1412 aa11.04□□□□□ -0.64
HERC4-211ENST00000492996 PPARGC1BQ86YN6 1023 aaKnown RBP11.04□□□□□ -0.64
HERC4-211ENST00000492996 TET3O43151 1660 aa11.03□□□□□ -0.64
HERC4-211ENST00000492996 RPRD2Q5VT52 1461 aaKnown RBP11.03□□□□□ -0.64
HERC4-211ENST00000492996 ARHGAP5Q13017 1502 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms