RNA–Protein interactions for RNA: ENST00000492692.1

CSMD3-206, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 1,830 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-206ENST00000492692 RNF216Q9NWF9 866 aaPredicted RBP14.62□□□□□ -0.07
CSMD3-206ENST00000492692 CCNB3Q8WWL7 1395 aa14.6□□□□□ -0.07
CSMD3-206ENST00000492692 MAPKBP1O60336 1514 aa14.59□□□□□ -0.07
CSMD3-206ENST00000492692 B4GALNT3Q6L9W6 998 aa14.59□□□□□ -0.07
CSMD3-206ENST00000492692 TOP2BQ02880 1626 aa14.58□□□□□ -0.08
CSMD3-206ENST00000492692 PRXQ9BXM0 1461 aa14.57□□□□□ -0.08
CSMD3-206ENST00000492692 MAP3K1Q13233 1512 aa14.57□□□□□ -0.08
CSMD3-206ENST00000492692 HAP1P54257 671 aaPredicted RBP14.57□□□□□ -0.08
CSMD3-206ENST00000492692 PPP1R15AO75807 674 aaPredicted RBP14.56□□□□□ -0.08
CSMD3-206ENST00000492692 TERF1P54274 439 aa14.56□□□□□ -0.08
CSMD3-206ENST00000492692 IRX6P78412 446 aaPredicted RBP14.56□□□□□ -0.08
CSMD3-206ENST00000492692 ZNF830Q96NB3 372 aaPredicted RBP14.56□□□□□ -0.08
CSMD3-206ENST00000492692 BIVM-ERCC5R4GMW8 1640 aa14.56□□□□□ -0.08
CSMD3-206ENST00000492692 DMTNQ08495 405 aa14.55□□□□□ -0.08
CSMD3-206ENST00000492692 MTERF4Q7Z6M4 381 aaKnown RBP14.55□□□□□ -0.08
CSMD3-206ENST00000492692 TAF3Q5VWG9 929 aa14.53□□□□□ -0.08
CSMD3-206ENST00000492692 ANP32CO43423 234 aa14.52□□□□□ -0.08
CSMD3-206ENST00000492692 C14orf37Q86TY3 774 aa14.52□□□□□ -0.08
CSMD3-206ENST00000492692 ANP32BQ92688 251 aaKnown RBP14.52□□□□□ -0.08
CSMD3-206ENST00000492692 KIF20AO95235 890 aa14.52□□□□□ -0.09
CSMD3-206ENST00000492692 RAB3GAP2Q9H2M9 1393 aa14.5□□□□□ -0.09
CSMD3-206ENST00000492692 TCERG1O14776 1098 aaKnown RBP14.5□□□□□ -0.09
CSMD3-206ENST00000492692 MS4A1P11836 297 aa14.5□□□□□ -0.09
CSMD3-206ENST00000492692 PPP4R3BQ5MIZ7 849 aa14.5□□□□□ -0.09
CSMD3-206ENST00000492692 WDR97A6NE52 1622 aa14.5□□□□□ -0.09
CSMD3-206ENST00000492692 KANK4Q5T7N3 995 aaPredicted RBP14.5□□□□□ -0.09
CSMD3-206ENST00000492692 RGS22Q8NE09 1264 aa14.49□□□□□ -0.09
CSMD3-206ENST00000492692 SETD5Q9C0A6 1442 aa14.49□□□□□ -0.09
CSMD3-206ENST00000492692 CDK11BP21127 795 aaKnown RBP14.48□□□□□ -0.09
CSMD3-206ENST00000492692 MMP14P50281 582 aa14.48□□□□□ -0.09
CSMD3-206ENST00000492692 TNNT2P45379 298 aaPredicted RBP14.47□□□□□ -0.09
CSMD3-206ENST00000492692 DDX10Q13206 875 aaKnown RBP14.47□□□□□ -0.09
CSMD3-206ENST00000492692 FOXD1Q16676 465 aa14.45□□□□□ -0.1
CSMD3-206ENST00000492692 GTPBP4Q9BZE4 634 aaKnown RBP14.45□□□□□ -0.1
CSMD3-206ENST00000492692 IRX3P78415 501 aaPredicted RBP14.43□□□□□ -0.1
CSMD3-206ENST00000492692 RNF123Q5XPI4 1314 aa14.43□□□□□ -0.1
CSMD3-206ENST00000492692 SLC20A2Q08357 652 aa14.43□□□□□ -0.1
CSMD3-206ENST00000492692 BACH2Q9BYV9 841 aa14.43□□□□□ -0.1
CSMD3-206ENST00000492692 ZHX1Q9UKY1 873 aaPredicted RBP14.43□□□□□ -0.1
CSMD3-206ENST00000492692 LETM1O95202 739 aaPredicted RBP14.42□□□□□ -0.1
CSMD3-206ENST00000492692 CLGNO14967 610 aa14.41□□□□□ -0.1
CSMD3-206ENST00000492692 HNRNPUQ00839 825 aaKnown RBP eCLIP14.41□□□□□ -0.1
CSMD3-206ENST00000492692 AMER1Q5JTC6 1135 aaPredicted RBP14.41□□□□□ -0.1
CSMD3-206ENST00000492692 TIAM1Q13009 1591 aa14.41□□□□□ -0.1
CSMD3-206ENST00000492692 PDE4AP27815 886 aa14.39□□□□□ -0.11
CSMD3-206ENST00000492692 ARHGAP35Q9NRY4 1499 aa14.39□□□□□ -0.11
CSMD3-206ENST00000492692 PLCD3Q8N3E9 789 aa14.38□□□□□ -0.11
CSMD3-206ENST00000492692 CC2D2AQ9P2K1 1620 aa14.38□□□□□ -0.11
CSMD3-206ENST00000492692 GOLGA6L3A6NEY3 463 aa14.38□□□□□ -0.11
CSMD3-206ENST00000492692 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.38□□□□□ -0.11
CSMD3-206ENST00000492692 ESPNB1AK53 854 aa14.37□□□□□ -0.11
CSMD3-206ENST00000492692 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.37□□□□□ -0.11
CSMD3-206ENST00000492692 ARID3AQ99856 593 aa14.37□□□□□ -0.11
CSMD3-206ENST00000492692 FSD2A1L4K1 749 aa14.36□□□□□ -0.11
CSMD3-206ENST00000492692 AXDND1Q5T1B0 1012 aaPredicted RBP14.36□□□□□ -0.11
CSMD3-206ENST00000492692 ZSCAN20P17040 1043 aaPredicted RBP14.36□□□□□ -0.11
CSMD3-206ENST00000492692 CNPY4Q8N129 248 aa14.36□□□□□ -0.11
CSMD3-206ENST00000492692 ATAD2BQ9ULI0 1458 aa14.35□□□□□ -0.11
CSMD3-206ENST00000492692 KIF27Q86VH2 1401 aa14.35□□□□□ -0.11
CSMD3-206ENST00000492692 ZNF622Q969S3 477 aaKnown RBP eCLIP14.34□□□□□ -0.11
CSMD3-206ENST00000492692 ZBED9Q6R2W3 1325 aa14.34□□□□□ -0.11
CSMD3-206ENST00000492692 FRAT2O75474 233 aaPredicted RBP14.34□□□□□ -0.11
CSMD3-206ENST00000492692 RIPK4P57078 832 aa14.34□□□□□ -0.11
CSMD3-206ENST00000492692 GRIPAP1Q4V328 841 aa14.34□□□□□ -0.11
CSMD3-206ENST00000492692 CFAP43Q8NDM7 1665 aa14.33□□□□□ -0.12
CSMD3-206ENST00000492692 SMG6Q86US8 1419 aaKnown RBP14.32□□□□□ -0.12
CSMD3-206ENST00000492692 LRRC9Q6ZRR7 1453 aa14.32□□□□□ -0.12
CSMD3-206ENST00000492692 PTMAP06454 111 aaKnown RBP14.31□□□□□ -0.12
CSMD3-206ENST00000492692 KIAA1211Q6ZU35 1233 aa14.31□□□□□ -0.12
CSMD3-206ENST00000492692 XRCC6P12956 609 aaKnown RBP eCLIP14.31□□□□□ -0.12
CSMD3-206ENST00000492692 TRIM44Q96DX7 344 aaPredicted RBP14.31□□□□□ -0.12
CSMD3-206ENST00000492692 KCNG1Q9UIX4 513 aa14.31□□□□□ -0.12
CSMD3-206ENST00000492692 ISY1Q9ULR0 285 aaKnown RBP14.31□□□□□ -0.12
CSMD3-206ENST00000492692 VGLL3A8MV65 326 aa14.3□□□□□ -0.12
CSMD3-206ENST00000492692 PTMSP20962 102 aa14.3□□□□□ -0.12
CSMD3-206ENST00000492692 FHAD1B1AJZ9 1412 aa14.29□□□□□ -0.12
CSMD3-206ENST00000492692 OFD1O75665 1012 aa14.29□□□□□ -0.12
CSMD3-206ENST00000492692 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.29□□□□□ -0.12
CSMD3-206ENST00000492692 CCDC94Q9BW85 323 aaPredicted RBP14.28□□□□□ -0.12
CSMD3-206ENST00000492692 TAOK2Q9UL54 1235 aa14.28□□□□□ -0.12
CSMD3-206ENST00000492692 TICAM2Q86XR7 235 aa14.27□□□□□ -0.12
CSMD3-206ENST00000492692 WWC1Q8IX03 1113 aa14.27□□□□□ -0.12
CSMD3-206ENST00000492692 SIN3AQ96ST3 1273 aa14.27□□□□□ -0.12
CSMD3-206ENST00000492692 YY1AP1Q9H869 796 aa14.27□□□□□ -0.12
CSMD3-206ENST00000492692 PSEN1P49768 467 aa14.27□□□□□ -0.13
CSMD3-206ENST00000492692 DNTTIP2Q5QJE6 756 aaKnown RBP14.27□□□□□ -0.13
CSMD3-206ENST00000492692 POGKQ9P215 609 aa14.25□□□□□ -0.13
CSMD3-206ENST00000492692 MRE11P49959 708 aa14.25□□□□□ -0.13
CSMD3-206ENST00000492692 DNAJC2Q99543 621 aaKnown RBP14.25□□□□□ -0.13
CSMD3-206ENST00000492692 HDAC5Q9UQL6 1122 aa14.25□□□□□ -0.13
CSMD3-206ENST00000492692 PHLDB1Q86UU1 1377 aa14.24□□□□□ -0.13
CSMD3-206ENST00000492692 DYNC1I1O14576 645 aa14.24□□□□□ -0.13
CSMD3-206ENST00000492692 FAM193AP78312 1265 aa14.23□□□□□ -0.13
CSMD3-206ENST00000492692 TONSLQ96HA7 1378 aa14.23□□□□□ -0.13
CSMD3-206ENST00000492692 CUX1P39880 1505 aa14.22□□□□□ -0.13
CSMD3-206ENST00000492692 MCCP23508 829 aa14.22□□□□□ -0.13
CSMD3-206ENST00000492692 ERBB4Q15303 1308 aa14.21□□□□□ -0.13
CSMD3-206ENST00000492692 NCOA2Q15596 1464 aa14.2□□□□□ -0.14
CSMD3-206ENST00000492692 GEMIN8Q9NWZ8 242 aaKnown RBP14.2□□□□□ -0.14
CSMD3-206ENST00000492692 PHF14O94880 888 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms