RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 SCAPERQ9BY12 1400 aa22.02■■□□□ 1.12
HDAC3-213ENST00000492506 ARHGEF12Q9NZN5 1544 aa22.01■■□□□ 1.11
HDAC3-213ENST00000492506 MYO5CQ9NQX4 1742 aa22■■□□□ 1.11
HDAC3-213ENST00000492506 MLECQ14165 292 aa21.98■■□□□ 1.11
HDAC3-213ENST00000492506 PREX1Q8TCU6 1659 aa21.98■■□□□ 1.11
HDAC3-213ENST00000492506 ATP10AO60312 1499 aa21.96■■□□□ 1.11
HDAC3-213ENST00000492506 CERKQ8TCT0 537 aa21.96■■□□□ 1.11
HDAC3-213ENST00000492506 C9orf84Q5VXU9 1444 aa21.94■■□□□ 1.1
HDAC3-213ENST00000492506 KIF14Q15058 1648 aa21.93■■□□□ 1.1
HDAC3-213ENST00000492506 STRCQ7RTU9 1775 aa21.93■■□□□ 1.1
HDAC3-213ENST00000492506 KDM5CP41229 1560 aa21.9■■□□□ 1.1
HDAC3-213ENST00000492506 LRRIQ1Q96JM4 1722 aa21.89■■□□□ 1.1
HDAC3-213ENST00000492506 SETD1BQ9UPS6 1966 aaKnown RBP21.89■■□□□ 1.09
HDAC3-213ENST00000492506 EFCAB2Q5VUJ9 269 aa21.89■■□□□ 1.09
HDAC3-213ENST00000492506 CEBPAP49715 358 aaPredicted RBP21.88■■□□□ 1.09
HDAC3-213ENST00000492506 ZNF518AQ6AHZ1 1483 aa21.87■■□□□ 1.09
HDAC3-213ENST00000492506 ARHGAP35Q9NRY4 1499 aa21.87■■□□□ 1.09
HDAC3-213ENST00000492506 FMN1Q68DA7 1419 aa21.87■■□□□ 1.09
HDAC3-213ENST00000492506 CDC42BPBQ9Y5S2 1711 aa21.85■■□□□ 1.09
HDAC3-213ENST00000492506 DIP2CQ9Y2E4 1556 aa21.84■■□□□ 1.09
HDAC3-213ENST00000492506 REREQ9P2R6 1566 aa21.83■■□□□ 1.09
HDAC3-213ENST00000492506 AFAP1Q8N556 730 aa21.83■■□□□ 1.09
HDAC3-213ENST00000492506 TROQ12816 1431 aaPredicted RBP21.82■■□□□ 1.08
HDAC3-213ENST00000492506 ARHGAP5Q13017 1502 aa21.82■■□□□ 1.08
HDAC3-213ENST00000492506 C3P01024 1663 aa21.82■■□□□ 1.08
HDAC3-213ENST00000492506 ABCA6Q8N139 1617 aa21.81■■□□□ 1.08
HDAC3-213ENST00000492506 ATP1B4Q9UN42 357 aaPredicted RBP21.81■■□□□ 1.08
HDAC3-213ENST00000492506 CDK11AQ9UQ88 783 aaPredicted RBP21.8■■□□□ 1.08
HDAC3-213ENST00000492506 UHRF1BP1Q6BDS2 1440 aa21.78■■□□□ 1.08
HDAC3-213ENST00000492506 MLH3Q9UHC1 1453 aa21.77■■□□□ 1.08
HDAC3-213ENST00000492506 UBTFP17480 764 aaKnown RBP21.76■■□□□ 1.07
HDAC3-213ENST00000492506 DMRT2Q9Y5R5 561 aa21.76■■□□□ 1.07
HDAC3-213ENST00000492506 PREX2Q70Z35 1606 aa21.76■■□□□ 1.07
HDAC3-213ENST00000492506 ITSN2Q9NZM3 1697 aa21.75■■□□□ 1.07
HDAC3-213ENST00000492506 AGLP35573 1532 aa21.75■■□□□ 1.07
HDAC3-213ENST00000492506 CLIP1P30622 1438 aa21.74■■□□□ 1.07
HDAC3-213ENST00000492506 EHMT2Q96KQ7 1210 aa21.74■■□□□ 1.07
HDAC3-213ENST00000492506 ABCC1P33527 1531 aa21.73■■□□□ 1.07
HDAC3-213ENST00000492506 TRAPPC8Q9Y2L5 1435 aa21.72■■□□□ 1.07
HDAC3-213ENST00000492506 KIDINS220Q9ULH0 1771 aa21.72■■□□□ 1.07
HDAC3-213ENST00000492506 PTPRTO14522 1441 aa21.72■■□□□ 1.07
HDAC3-213ENST00000492506 CDC42BPAQ5VT25 1732 aa21.7■■□□□ 1.06
HDAC3-213ENST00000492506 ILDR2Q71H61 639 aa21.69■■□□□ 1.06
HDAC3-213ENST00000492506 MYT1LQ9UL68 1186 aa21.68■■□□□ 1.06
HDAC3-213ENST00000492506 LTBP4Q8N2S1 1624 aa21.68■■□□□ 1.06
HDAC3-213ENST00000492506 DISP3Q9P2K9 1392 aa21.66■■□□□ 1.06
HDAC3-213ENST00000492506 NCOA1Q15788 1441 aa21.63■■□□□ 1.05
HDAC3-213ENST00000492506 CASKIN1Q8WXD9 1431 aa21.63■■□□□ 1.05
HDAC3-213ENST00000492506 MROH2AA6NES4 1674 aa21.63■■□□□ 1.05
HDAC3-213ENST00000492506 CCDC18Q5T9S5 1454 aa21.62■■□□□ 1.05
HDAC3-213ENST00000492506 CNTLNQ9NXG0 1405 aa21.61■■□□□ 1.05
HDAC3-213ENST00000492506 SAMD9LQ8IVG5 1584 aa21.61■■□□□ 1.05
HDAC3-213ENST00000492506 IQSEC2Q5JU85 1478 aa21.59■■□□□ 1.05
HDAC3-213ENST00000492506 ESF1Q9H501 851 aaKnown RBP21.59■■□□□ 1.05
HDAC3-213ENST00000492506 SPATA31D1Q6ZQQ2 1576 aa21.58■■□□□ 1.05
HDAC3-213ENST00000492506 SOCS7O14512 581 aa21.58■■□□□ 1.05
HDAC3-213ENST00000492506 CAMSAP1Q5T5Y3 1602 aa21.57■■□□□ 1.04
HDAC3-213ENST00000492506 SUPT6HQ7KZ85 1726 aaKnown RBP21.57■■□□□ 1.04
HDAC3-213ENST00000492506 NPATQ14207 1427 aa21.56■■□□□ 1.04
HDAC3-213ENST00000492506 SYCP2Q9BX26 1530 aa21.54■■□□□ 1.04
HDAC3-213ENST00000492506 CLTCQ00610 1675 aaKnown RBP21.53■■□□□ 1.04
HDAC3-213ENST00000492506 ZMYM3Q14202 1370 aa21.52■■□□□ 1.04
HDAC3-213ENST00000492506 GPATCH8Q9UKJ3 1502 aaKnown RBP21.52■■□□□ 1.04
HDAC3-213ENST00000492506 CHIC1Q5VXU3 224 aa21.52■■□□□ 1.04
HDAC3-213ENST00000492506 ZNF142P52746 1687 aaPredicted RBP21.52■■□□□ 1.04
HDAC3-213ENST00000492506 PLXNC1O60486 1568 aa21.52■■□□□ 1.04
HDAC3-213ENST00000492506 FYCO1Q9BQS8 1478 aa21.52■■□□□ 1.03
HDAC3-213ENST00000492506 INO80Q9ULG1 1556 aaPredicted RBP21.5■■□□□ 1.03
HDAC3-213ENST00000492506 MYO3AQ8NEV4 1616 aa21.5■■□□□ 1.03
HDAC3-213ENST00000492506 ATP7AQ04656 1500 aa21.5■■□□□ 1.03
HDAC3-213ENST00000492506 ZNF777Q9ULD5 760 aaPredicted RBP21.48■■□□□ 1.03
HDAC3-213ENST00000492506 SPAG9O60271 1321 aaKnown RBP21.48■■□□□ 1.03
HDAC3-213ENST00000492506 HNRNPMP52272 730 aaKnown RBP eCLIP21.47■■□□□ 1.03
HDAC3-213ENST00000492506 NCKAP5LQ9HCH0 1330 aa21.46■■□□□ 1.03
HDAC3-213ENST00000492506 KIAA1107Q9UPP5 1409 aa21.46■■□□□ 1.03
HDAC3-213ENST00000492506 PLA2R1Q13018 1463 aa21.45■■□□□ 1.02
HDAC3-213ENST00000492506 CEP170BQ9Y4F5 1589 aaPredicted RBP21.44■■□□□ 1.02
HDAC3-213ENST00000492506 ZNF335Q9H4Z2 1342 aaPredicted RBP21.44■■□□□ 1.02
HDAC3-213ENST00000492506 PTPRKQ15262 1439 aa21.44■■□□□ 1.02
HDAC3-213ENST00000492506 A2MP01023 1474 aa21.44■■□□□ 1.02
HDAC3-213ENST00000492506 TCOF1Q13428 1488 aaKnown RBP21.44■■□□□ 1.02
HDAC3-213ENST00000492506 ADGBQ8N7X0 1667 aa21.42■■□□□ 1.02
HDAC3-213ENST00000492506 PLEKHH2Q8IVE3 1493 aa21.41■■□□□ 1.02
HDAC3-213ENST00000492506 PKD2Q13563 968 aa21.39■■□□□ 1.01
HDAC3-213ENST00000492506 CFDP1Q9UEE9 299 aaPredicted RBP21.37■■□□□ 1.01
HDAC3-213ENST00000492506 UBAP1LF5GYI3 381 aa21.35■■□□□ 1.01
HDAC3-213ENST00000492506 GGT6Q6P531 493 aa21.35■■□□□ 1.01
HDAC3-213ENST00000492506 DNMT1P26358 1616 aaKnown RBP21.35■■□□□ 1.01
HDAC3-213ENST00000492506 CCNB3Q8WWL7 1395 aa21.35■■□□□ 1.01
HDAC3-213ENST00000492506 TIAM1Q13009 1591 aa21.33■■□□□ 1.01
HDAC3-213ENST00000492506 PPP6R1Q9UPN7 881 aa21.33■■□□□ 1.01
HDAC3-213ENST00000492506 MBD5Q9P267 1494 aa21.32■■□□□ 1
HDAC3-213ENST00000492506 POLR1AO95602 1720 aaPredicted RBP21.32■■□□□ 1
HDAC3-213ENST00000492506 A2ML1A8K2U0 1454 aa21.32■■□□□ 1
HDAC3-213ENST00000492506 ZNF644Q9H582 1327 aaPredicted RBP21.3■■□□□ 1
HDAC3-213ENST00000492506 NEURL4Q96JN8 1562 aa21.29■■□□□ 1
HDAC3-213ENST00000492506 MTUS2Q5JR59 1369 aa21.28■■□□□ 1
HDAC3-213ENST00000492506 RTEL1-TNFRSF6BF6WH68 1400 aa21.28■■□□□ 1
HDAC3-213ENST00000492506 DHX29Q7Z478 1369 aaKnown RBP21.24■□□□□ 0.99
HDAC3-213ENST00000492506 EHBP1L1Q8N3D4 1523 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms