RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 PLCH2O75038 1416 aa23.35■■□□□ 1.33
VARS-227ENST00000489979 FER1L4A9Z1Z3 1794 aa23.35■■□□□ 1.33
VARS-227ENST00000489979 ATP1B4Q9UN42 357 aaPredicted RBP23.31■■□□□ 1.32
VARS-227ENST00000489979 ATP10AO60312 1499 aa23.29■■□□□ 1.32
VARS-227ENST00000489979 MYO5CQ9NQX4 1742 aa23.28■■□□□ 1.32
VARS-227ENST00000489979 EFCAB2Q5VUJ9 269 aa23.27■■□□□ 1.32
VARS-227ENST00000489979 EHMT2Q96KQ7 1210 aa23.27■■□□□ 1.32
VARS-227ENST00000489979 ARHGEF12Q9NZN5 1544 aa23.27■■□□□ 1.32
VARS-227ENST00000489979 C9orf84Q5VXU9 1444 aa23.26■■□□□ 1.31
VARS-227ENST00000489979 CERKQ8TCT0 537 aa23.25■■□□□ 1.31
VARS-227ENST00000489979 FMN1Q68DA7 1419 aa23.25■■□□□ 1.31
VARS-227ENST00000489979 UBTFP17480 764 aaKnown RBP23.24■■□□□ 1.31
VARS-227ENST00000489979 KIF14Q15058 1648 aa23.23■■□□□ 1.31
VARS-227ENST00000489979 CDK11AQ9UQ88 783 aaPredicted RBP23.23■■□□□ 1.31
VARS-227ENST00000489979 CEBPAP49715 358 aaPredicted RBP23.21■■□□□ 1.31
VARS-227ENST00000489979 ARHGAP35Q9NRY4 1499 aa23.21■■□□□ 1.31
VARS-227ENST00000489979 PREX1Q8TCU6 1659 aa23.21■■□□□ 1.31
VARS-227ENST00000489979 ZNF518AQ6AHZ1 1483 aa23.18■■□□□ 1.3
VARS-227ENST00000489979 AFAP1Q8N556 730 aa23.18■■□□□ 1.3
VARS-227ENST00000489979 ARHGAP5Q13017 1502 aa23.18■■□□□ 1.3
VARS-227ENST00000489979 TROQ12816 1431 aaPredicted RBP23.17■■□□□ 1.3
VARS-227ENST00000489979 KDM5CP41229 1560 aa23.15■■□□□ 1.3
VARS-227ENST00000489979 MYT1LQ9UL68 1186 aa23.15■■□□□ 1.3
VARS-227ENST00000489979 CLIP1P30622 1438 aa23.13■■□□□ 1.29
VARS-227ENST00000489979 LRRIQ1Q96JM4 1722 aa23.13■■□□□ 1.29
VARS-227ENST00000489979 STRCQ7RTU9 1775 aa23.12■■□□□ 1.29
VARS-227ENST00000489979 DIP2CQ9Y2E4 1556 aa23.11■■□□□ 1.29
VARS-227ENST00000489979 SETD1BQ9UPS6 1966 aaKnown RBP23.11■■□□□ 1.29
VARS-227ENST00000489979 CDC42BPBQ9Y5S2 1711 aa23.1■■□□□ 1.29
VARS-227ENST00000489979 UHRF1BP1Q6BDS2 1440 aa23.09■■□□□ 1.29
VARS-227ENST00000489979 DMRT2Q9Y5R5 561 aa23.08■■□□□ 1.29
VARS-227ENST00000489979 REREQ9P2R6 1566 aa23.07■■□□□ 1.28
VARS-227ENST00000489979 ABCA6Q8N139 1617 aa23.07■■□□□ 1.28
VARS-227ENST00000489979 MLH3Q9UHC1 1453 aa23.05■■□□□ 1.28
VARS-227ENST00000489979 C3P01024 1663 aa23.04■■□□□ 1.28
VARS-227ENST00000489979 TRAPPC8Q9Y2L5 1435 aa23.03■■□□□ 1.28
VARS-227ENST00000489979 PREX2Q70Z35 1606 aa23.03■■□□□ 1.28
VARS-227ENST00000489979 ABCC1P33527 1531 aa23.03■■□□□ 1.28
VARS-227ENST00000489979 ESF1Q9H501 851 aaKnown RBP23.01■■□□□ 1.27
VARS-227ENST00000489979 ITSN2Q9NZM3 1697 aa23■■□□□ 1.27
VARS-227ENST00000489979 AGLP35573 1532 aa23■■□□□ 1.27
VARS-227ENST00000489979 CCDC18Q5T9S5 1454 aa22.98■■□□□ 1.27
VARS-227ENST00000489979 PTPRTO14522 1441 aa22.97■■□□□ 1.27
VARS-227ENST00000489979 CASKIN1Q8WXD9 1431 aa22.97■■□□□ 1.27
VARS-227ENST00000489979 KIDINS220Q9ULH0 1771 aa22.96■■□□□ 1.27
VARS-227ENST00000489979 CHIC1Q5VXU3 224 aa22.96■■□□□ 1.27
VARS-227ENST00000489979 CDC42BPAQ5VT25 1732 aa22.96■■□□□ 1.27
VARS-227ENST00000489979 DISP3Q9P2K9 1392 aa22.94■■□□□ 1.26
VARS-227ENST00000489979 CNTLNQ9NXG0 1405 aa22.91■■□□□ 1.26
VARS-227ENST00000489979 SAMD9LQ8IVG5 1584 aa22.89■■□□□ 1.26
VARS-227ENST00000489979 ILDR2Q71H61 639 aa22.89■■□□□ 1.25
VARS-227ENST00000489979 ZNF777Q9ULD5 760 aaPredicted RBP22.89■■□□□ 1.25
VARS-227ENST00000489979 LTBP4Q8N2S1 1624 aa22.88■■□□□ 1.25
VARS-227ENST00000489979 NCOA1Q15788 1441 aa22.88■■□□□ 1.25
VARS-227ENST00000489979 SYCP2Q9BX26 1530 aa22.85■■□□□ 1.25
VARS-227ENST00000489979 FYCO1Q9BQS8 1478 aa22.85■■□□□ 1.25
VARS-227ENST00000489979 MROH2AA6NES4 1674 aa22.84■■□□□ 1.25
VARS-227ENST00000489979 SPAG9O60271 1321 aaKnown RBP22.83■■□□□ 1.25
VARS-227ENST00000489979 NPATQ14207 1427 aa22.83■■□□□ 1.25
VARS-227ENST00000489979 GPATCH8Q9UKJ3 1502 aaKnown RBP22.83■■□□□ 1.25
VARS-227ENST00000489979 CAMSAP1Q5T5Y3 1602 aa22.83■■□□□ 1.25
VARS-227ENST00000489979 SUPT6HQ7KZ85 1726 aaKnown RBP22.83■■□□□ 1.25
VARS-227ENST00000489979 HNRNPMP52272 730 aaKnown RBP eCLIP22.83■■□□□ 1.25
VARS-227ENST00000489979 ZMYM3Q14202 1370 aa22.83■■□□□ 1.25
VARS-227ENST00000489979 IQSEC2Q5JU85 1478 aa22.8■■□□□ 1.24
VARS-227ENST00000489979 SOCS7O14512 581 aa22.79■■□□□ 1.24
VARS-227ENST00000489979 SPATA31D1Q6ZQQ2 1576 aa22.78■■□□□ 1.24
VARS-227ENST00000489979 NCKAP5LQ9HCH0 1330 aa22.78■■□□□ 1.24
VARS-227ENST00000489979 CLTCQ00610 1675 aaKnown RBP22.77■■□□□ 1.24
VARS-227ENST00000489979 ATP7AQ04656 1500 aa22.77■■□□□ 1.24
VARS-227ENST00000489979 KIAA1107Q9UPP5 1409 aa22.76■■□□□ 1.23
VARS-227ENST00000489979 CFDP1Q9UEE9 299 aaPredicted RBP22.76■■□□□ 1.23
VARS-227ENST00000489979 PLXNC1O60486 1568 aa22.75■■□□□ 1.23
VARS-227ENST00000489979 INO80Q9ULG1 1556 aaPredicted RBP22.75■■□□□ 1.23
VARS-227ENST00000489979 A2MP01023 1474 aa22.74■■□□□ 1.23
VARS-227ENST00000489979 PLEKHH2Q8IVE3 1493 aa22.74■■□□□ 1.23
VARS-227ENST00000489979 MYO3AQ8NEV4 1616 aa22.72■■□□□ 1.23
VARS-227ENST00000489979 GGT6Q6P531 493 aa22.72■■□□□ 1.23
VARS-227ENST00000489979 ZNF335Q9H4Z2 1342 aaPredicted RBP22.72■■□□□ 1.23
VARS-227ENST00000489979 CCNB3Q8WWL7 1395 aa22.72■■□□□ 1.23
VARS-227ENST00000489979 ZNF142P52746 1687 aaPredicted RBP22.71■■□□□ 1.23
VARS-227ENST00000489979 PTPRKQ15262 1439 aa22.71■■□□□ 1.23
VARS-227ENST00000489979 CEP170BQ9Y4F5 1589 aaPredicted RBP22.69■■□□□ 1.22
VARS-227ENST00000489979 PLA2R1Q13018 1463 aa22.69■■□□□ 1.22
VARS-227ENST00000489979 PKD2Q13563 968 aa22.69■■□□□ 1.22
VARS-227ENST00000489979 MTUS2Q5JR59 1369 aa22.66■■□□□ 1.22
VARS-227ENST00000489979 ADGBQ8N7X0 1667 aa22.66■■□□□ 1.22
VARS-227ENST00000489979 UBAP1LF5GYI3 381 aa22.66■■□□□ 1.22
VARS-227ENST00000489979 TCOF1Q13428 1488 aaKnown RBP22.66■■□□□ 1.22
VARS-227ENST00000489979 ZNF644Q9H582 1327 aaPredicted RBP22.64■■□□□ 1.22
VARS-227ENST00000489979 PPP6R1Q9UPN7 881 aa22.64■■□□□ 1.21
VARS-227ENST00000489979 TIAM1Q13009 1591 aa22.61■■□□□ 1.21
VARS-227ENST00000489979 MBD5Q9P267 1494 aa22.6■■□□□ 1.21
VARS-227ENST00000489979 A2ML1A8K2U0 1454 aa22.59■■□□□ 1.21
VARS-227ENST00000489979 DNMT1P26358 1616 aaKnown RBP22.57■■□□□ 1.2
VARS-227ENST00000489979 RTEL1-TNFRSF6BF6WH68 1400 aa22.57■■□□□ 1.2
VARS-227ENST00000489979 DHX29Q7Z478 1369 aaKnown RBP22.56■■□□□ 1.2
VARS-227ENST00000489979 EHBP1L1Q8N3D4 1523 aa22.56■■□□□ 1.2
VARS-227ENST00000489979 CEP162Q5TB80 1403 aa22.52■■□□□ 1.2
VARS-227ENST00000489979 KIF3BO15066 747 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms